genome.fa.s5392.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005392.1 Hibiscus syriacus cultivar Beakdansim tig00012359_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196265

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2108--2221	20	5.8	20	82	8	146	25	19	16	38	1.92
2093--2225	58	2.3	58	92	3	214	24	19	18	37	1.94
3337--3374	2	19.0	2	100	0	76	50	0	0	50	1.00
12593--12634	21	2.0	21	90	0	66	33	0	9	57	1.31
15563--15613	24	2.2	24	82	10	61	33	5	3	56	1.42
25869--25920	21	2.5	21	71	6	52	23	23	17	36	1.95
25910--26000	40	2.3	41	77	9	98	29	24	20	25	1.99
25930--26043	40	2.8	41	83	1	149	27	25	19	28	1.99
25943--26043	41	2.5	40	81	1	130	26	25	18	28	1.98
25930--26038	20	5.4	20	87	2	128	25	26	19	28	1.99
26197--26230	12	2.9	12	86	4	52	17	41	5	35	1.74
26771--26838	24	2.8	24	81	0	82	27	16	17	38	1.91
27013--27037	12	2.1	12	100	0	50	72	0	28	0	0.86
29337--29419	20	4.3	19	81	4	94	38	19	22	19	1.93
29355--29419	19	3.4	19	82	4	94	41	18	23	16	1.90
29344--29498	33	4.3	36	83	9	160	41	18	24	14	1.88
29364--29496	33	3.8	33	87	6	167	43	18	24	14	1.86
29496--29539	19	2.4	19	88	3	72	15	15	25	43	1.87
29506--29604	19	5.7	19	68	24	76	11	22	21	45	1.83
29530--29586	14	3.7	14	72	20	51	10	24	21	43	1.83
29511--29604	33	2.8	33	93	3	154	11	22	21	44	1.84
29711--29747	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31097--31163	21	3.2	21	71	0	62	17	20	37	23	1.94
31616--31691	19	3.9	19	87	3	107	47	21	19	11	1.81
31693--31718	12	2.2	12	100	0	52	73	19	7	0	1.07
31790--32071	94	3.1	93	91	3	455	46	18	12	22	1.82
33764--33824	20	3.1	19	77	9	68	45	16	22	14	1.84
33813--33869	14	3.6	14	71	24	51	38	24	26	10	1.88
33792--33877	34	2.6	34	96	1	156	39	22	25	12	1.89
33793--33855	20	3.5	20	69	24	66	36	23	25	14	1.93
33919--33969	19	2.6	20	81	3	68	15	21	19	43	1.88
34515--34628	20	5.7	20	85	2	129	21	21	17	39	1.92
34515--34628	41	2.8	41	82	1	149	21	21	17	39	1.92
34618--34690	21	3.5	21	83	3	94	39	19	20	20	1.92
34618--34712	41	2.3	41	83	7	122	36	18	22	22	1.95
45886--45964	32	2.5	32	93	0	131	37	12	8	40	1.75
45886--45980	32	3.0	32	87	0	109	38	11	10	38	1.76
48838--48883	16	2.7	17	83	6	58	63	13	8	15	1.52
55086--55120	18	1.9	18	88	11	54	20	17	8	54	1.68
57767--57849	29	2.8	29	92	1	139	43	9	14	32	1.78
62537--62619	29	2.8	29	92	1	139	43	9	14	32	1.78
70363--70423	23	2.7	23	92	2	97	18	26	32	22	1.97
70339--70423	23	3.9	22	79	11	86	17	25	31	24	1.97
70851--70889	19	2.1	19	95	0	69	20	38	15	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70837--70997	65	2.5	65	86	3	218	30	26	16	27	1.96
70837--71017	64	2.8	64	83	2	220	29	26	17	27	1.97
77660--77703	21	2.1	21	86	0	61	9	36	15	38	1.80
78736--78774	19	2.1	19	95	0	69	20	38	15	25	1.92
78722--78882	65	2.5	65	86	3	218	30	26	16	27	1.96
78722--78902	64	2.8	64	83	2	220	29	26	17	27	1.97
82816--82846	9	3.3	9	95	4	53	41	9	12	35	1.76
83204--83243	21	1.9	21	89	0	62	10	25	40	25	1.86
83226--83286	20	2.9	21	87	7	79	18	26	34	21	1.96
89894--89920	13	2.1	13	100	0	54	14	14	33	37	1.88
95777--95806	11	2.7	11	94	0	51	46	0	3	50	1.18
97483--97517	18	1.9	18	88	11	54	17	17	8	57	1.64
97677--97720	21	2.0	21	86	4	61	45	0	6	47	1.29
106805--107110	54	5.6	53	79	8	184	26	21	25	25	2.00
106866--107111	112	2.2	111	87	4	354	25	22	26	25	2.00
107224--107380	81	2.0	81	93	1	271	31	21	31	15	1.95
118941--118996	2	29.0	2	92	7	98	50	0	0	50	1.00
120795--120830	3	12.0	3	93	0	63	63	0	0	36	0.94
120980--121347	73	5.0	73	96	0	664	32	19	21	26	1.97
121346--121673	167	2.0	164	93	1	566	39	12	14	34	1.83
122189--122269	22	3.7	22	93	0	126	43	12	12	32	1.79
126215--126256	15	2.8	15	83	16	52	4	16	0	78	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132112--132147	2	19.0	2	88	11	58	50	0	0	50	1.00
132473--132542	26	2.7	26	77	16	81	68	1	2	27	1.12
133947--133985	3	13.0	3	88	0	60	61	0	0	38	0.96
134866--134934	34	2.0	34	94	0	120	28	14	14	42	1.85
137307--137350	3	14.7	3	100	0	88	31	0	0	68	0.90
149704--149771	35	1.9	35	88	5	102	58	2	1	36	1.22
149734--149817	26	3.4	23	74	19	71	64	0	3	32	1.11
149746--149817	25	2.9	23	76	13	63	68	0	2	29	1.04
149709--149784	35	2.2	35	80	4	82	63	2	1	32	1.17
151039--151169	66	2.0	66	93	0	226	38	10	4	45	1.59
151575--151754	61	3.0	60	79	8	152	53	4	1	40	1.28
151621--151714	34	3.1	29	66	19	75	48	5	0	45	1.25
151716--151810	31	3.6	25	73	22	79	55	5	1	37	1.29
151703--151811	57	2.0	57	89	5	170	55	5	0	38	1.30
151604--151905	61	5.0	60	72	10	197	50	4	1	42	1.35
151637--152005	92	4.1	93	72	14	326	52	4	1	41	1.32
151623--151960	178	1.9	178	83	7	436	52	5	1	41	1.34
151820--152005	88	2.1	93	83	5	238	52	3	2	41	1.31
151966--152039	27	2.6	29	78	20	77	58	1	0	40	1.07
152040--152082	17	2.4	18	88	7	61	34	0	0	65	0.93
163829--163865	3	12.3	3	100	0	74	67	0	0	32	0.91
171539--171603	29	2.2	30	83	2	78	32	16	26	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175199--175224	13	2.0	13	100	0	52	15	30	23	30	1.95
187970--188030	23	2.7	23	89	0	95	18	24	27	29	1.98
191183--191212	14	2.1	15	93	6	53	0	26	0	73	0.84
193287--193347	23	2.7	23	89	0	95	18	24	27	29	1.98
193385--193418	17	2.1	17	88	5	52	32	23	5	38	1.79
194823--194883	22	2.7	23	82	5	70	37	14	18	29	1.90
195784--195944	81	2.0	83	93	2	281	47	7	13	31	1.70

Tables:   1

The End!