genome.fa.s5393.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005393.1 Hibiscus syriacus cultivar Beakdansim tig00012360_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102504

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4894--4932	21	1.9	20	84	5	51	28	15	20	35	1.93
10738--10770	2	16.5	2	100	0	66	51	0	0	48	1.00
15968--15992	13	1.9	13	100	0	50	24	16	16	44	1.86
22617--22675	4	14.0	4	76	16	57	74	0	0	25	0.82
22617--22675	19	3.0	21	80	14	72	74	0	0	25	0.82
22691--22728	16	2.4	16	95	4	69	44	5	0	50	1.24
22750--22804	23	2.5	20	77	11	56	41	9	5	43	1.59
22770--22894	37	3.4	37	82	12	150	40	9	5	44	1.61
22773--23011	37	6.5	37	73	13	138	43	10	5	41	1.61
25862--26688	81	10.2	81	91	0	1305	27	21	11	38	1.89
27330--27402	18	3.7	20	74	16	71	23	30	16	30	1.96
27339--27383	22	2.0	23	86	4	65	24	31	13	31	1.93
27275--27460	94	2.0	95	86	3	259	25	24	16	33	1.96
39749--39986	37	6.4	38	78	13	182	42	10	6	41	1.64
39749--39986	38	6.4	36	79	9	196	42	10	6	41	1.64
41045--41094	19	2.6	19	84	9	57	40	2	4	54	1.31
41966--42014	22	2.2	22	92	0	80	16	20	44	18	1.86
43074--43230	75	2.1	75	80	2	172	28	5	15	51	1.64
43222--43262	20	2.1	20	86	4	57	34	7	2	56	1.40
43232--43275	20	2.3	19	81	11	54	36	4	0	59	1.18
43337--43361	12	2.1	12	100	0	50	8	52	16	24	1.70
44644--44692	16	3.1	17	74	11	50	12	6	48	32	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44672--44705	3	11.3	3	93	0	50	5	0	61	32	1.20
45372--45462	3	29.7	3	79	8	94	38	2	0	59	1.10
45370--45456	19	4.9	19	75	10	78	40	2	0	57	1.11
46758--46792	12	2.8	13	91	8	56	42	0	0	57	0.99
47481--47525	13	3.5	13	82	11	58	24	0	0	75	0.80
47470--47520	18	3.0	17	81	16	52	21	1	0	76	0.88
47473--47525	7	7.1	7	75	12	52	24	1	0	73	0.93
49006--49047	7	6.0	7	81	8	50	14	16	14	54	1.71
49006--49047	15	3.0	14	83	10	50	14	16	14	54	1.71
49107--49165	26	2.3	26	84	0	82	22	11	8	57	1.61
51105--51157	15	3.4	15	81	5	61	77	0	20	1	0.87
51101--51163	6	9.8	6	78	11	63	76	0	20	3	0.93
53383--53730	83	4.2	83	94	0	581	27	13	21	37	1.91
54907--55068	74	2.2	74	84	4	202	33	17	20	28	1.95
56360--56411	22	2.4	22	90	0	77	40	11	13	34	1.81
56815--58293	113	13.0	112	79	9	1203	37	13	19	29	1.90
56815--57580	112	6.8	111	89	2	998	38	13	18	29	1.89
57518--57599	39	2.1	39	88	4	121	51	7	21	19	1.71
57462--57711	131	1.9	131	89	1	385	38	12	20	28	1.89
57074--58162	581	1.9	582	92	0	1824	38	13	19	28	1.90
56815--58295	224	6.5	226	85	5	1774	37	13	19	29	1.90
58686--58785	3	32.7	3	79	7	103	39	2	0	59	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60075--60109	12	2.8	13	91	8	56	42	0	0	57	0.99
61839--61888	3	17.3	3	89	8	77	34	0	0	66	0.92
74843--74872	8	3.6	8	91	8	51	83	3	13	0	0.77
77806--77835	15	2.0	15	93	0	51	50	0	0	50	1.00
79744--80100	177	2.0	178	90	1	565	34	10	11	43	1.75
80350--80385	2	18.0	2	94	0	63	52	0	0	47	1.00
81462--81495	15	2.3	15	89	0	50	41	0	2	55	1.15
89667--89791	60	2.1	60	83	3	153	36	15	11	37	1.83
91215--91264	26	1.9	26	100	0	100	54	18	12	16	1.72
93045--93081	15	2.6	14	87	8	56	16	10	8	64	1.47
93888--94186	139	2.1	138	85	4	406	29	11	14	45	1.79
96761--96826	33	2.0	33	100	0	132	24	18	30	27	1.98
98480--98516	18	2.1	18	94	0	65	48	10	13	27	1.75
98487--98549	28	2.2	28	91	0	99	42	15	12	28	1.84

Tables:   1

The End!