genome.fa.s5394.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005394.1 Hibiscus syriacus cultivar Beakdansim tig00012361_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127775

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1365--1407	18	2.3	19	84	4	52	27	2	6	62	1.33
2302--2687	191	2.1	187	82	6	460	36	11	12	39	1.79
10202--10239	17	2.4	16	87	12	53	63	2	2	31	1.22
17953--18040	21	4.1	21	68	16	63	34	25	17	23	1.96
28456--28665	105	2.0	105	89	0	321	23	25	6	44	1.76
32014--32048	2	17.5	2	88	11	54	48	0	2	48	1.16
32102--32130	2	14.5	2	100	0	58	51	0	0	48	1.00
32287--32351	13	5.0	13	81	3	60	33	15	21	29	1.94
32287--32351	26	2.5	26	79	0	76	33	15	21	29	1.94
33220--33278	24	2.5	24	97	0	109	27	16	16	38	1.91
34183--34230	23	2.1	23	84	0	60	37	12	16	33	1.86
34648--34721	23	3.2	23	90	0	112	39	21	4	35	1.73
37198--37688	183	2.7	183	95	0	858	33	17	14	34	1.90
38069--38119	22	2.3	23	89	3	77	43	17	1	37	1.61
38499--38556	23	2.5	23	88	0	89	37	18	5	37	1.74
37727--38761	426	2.4	425	94	3	1797	39	11	7	41	1.70
40139--40222	3	28.0	3	77	0	69	21	33	8	36	1.83
40139--40234	12	8.2	12	80	6	81	20	33	9	36	1.85
40139--40237	18	5.7	18	77	3	87	20	33	9	37	1.84
40143--40237	6	15.3	6	73	6	64	18	33	9	37	1.84
41702--42472	198	3.9	198	95	1	1373	30	17	15	36	1.91
42591--42638	18	2.6	18	90	3	69	56	10	2	31	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44428--44493	33	2.0	33	90	0	105	22	48	0	28	1.51
44527--44568	19	2.2	19	91	0	66	16	30	11	40	1.85
46782--46824	20	2.3	18	85	14	61	20	16	11	51	1.75
46787--46833	20	2.4	19	82	10	67	19	17	10	53	1.72
46754--47227	182	2.6	182	88	3	697	26	17	13	42	1.86
49190--49230	14	2.9	14	88	0	64	9	12	21	56	1.65
50237--50303	16	4.3	16	83	3	75	13	11	16	58	1.64
54325--54380	28	2.0	28	100	0	112	25	17	25	32	1.97
58001--58309	22	13.3	22	75	16	225	41	7	3	47	1.48
57991--58293	46	6.5	46	79	11	332	41	7	2	47	1.48
58022--58304	90	3.1	89	90	4	424	41	7	3	47	1.48
61863--61893	13	2.5	13	94	5	55	51	0	3	45	1.17
64158--64183	3	8.7	3	100	0	52	65	0	0	34	0.93
64610--64666	24	2.5	22	83	8	71	63	26	10	0	1.27
65353--65462	59	1.9	58	83	10	145	28	8	4	59	1.46
67409--67446	19	2.0	19	100	0	76	36	10	5	47	1.61
69745--69819	33	2.3	34	86	4	100	57	2	10	29	1.46
70495--70522	2	14.0	2	100	0	56	50	0	0	50	1.00
76777--76853	26	3.0	26	92	1	129	36	9	24	29	1.86
80010--80070	22	2.6	25	75	15	67	36	4	0	59	1.19
80171--80222	20	2.6	20	84	0	77	38	23	17	21	1.93
80979--81012	12	2.8	12	90	0	50	55	29	0	14	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81365--81389	12	2.1	12	100	0	50	72	0	28	0	0.86
83441--83476	18	2.0	18	94	0	63	55	25	2	16	1.55
83800--83866	20	3.3	20	85	0	98	20	17	22	38	1.93
83934--83983	25	2.0	25	96	0	91	26	8	22	44	1.80
84370--84406	18	2.1	18	89	0	56	32	5	10	51	1.60
84362--84414	24	2.2	24	86	0	70	35	3	13	47	1.61
84715--84801	39	2.2	39	95	0	156	47	20	13	18	1.83
84978--85050	20	4.0	20	64	20	59	38	19	21	20	1.94
85062--85117	20	2.8	20	88	0	94	16	17	25	41	1.89
85224--85277	14	3.9	14	77	0	63	46	18	0	35	1.50
85176--85327	79	2.0	76	84	6	200	49	17	0	32	1.51
90860--90899	21	1.9	21	89	0	62	25	40	25	10	1.86
95542--95616	21	3.6	21	76	3	71	25	16	33	25	1.95
97787--97827	20	2.1	20	90	4	66	9	19	24	46	1.80
98087--98129	22	2.0	22	90	0	68	16	11	44	27	1.82
98263--98388	20	6.2	20	78	12	132	20	17	23	38	1.93
98263--98465	40	5.1	40	76	11	175	22	16	26	35	1.94
98263--98465	81	2.5	80	82	6	216	22	16	26	35	1.94
98357--98428	20	3.5	21	83	5	85	26	12	29	31	1.93
98416--98465	19	2.6	19	93	0	82	20	16	30	34	1.94
99461--99501	17	2.4	17	100	0	82	56	7	4	31	1.48
107366--107471	23	4.7	23	81	9	112	33	27	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114277--114344	24	2.9	23	84	2	91	30	23	20	25	1.98
115855--115895	3	14.0	3	94	5	75	65	0	0	34	0.93
116243--116343	42	2.4	41	75	6	105	32	22	20	23	1.98
116036--116538	258	1.9	258	89	0	774	34	18	15	32	1.92
116509--116559	21	2.4	21	100	0	102	31	23	15	29	1.95
116045--116726	258	2.6	258	80	5	630	34	17	14	33	1.91
125032--125082	22	2.3	22	90	6	77	31	25	21	21	1.98
125076--125186	21	5.4	21	91	4	172	36	28	10	23	1.89
125076--125186	40	2.7	42	91	2	172	36	28	10	23	1.89

Tables:   1

The End!