genome.fa.s5395.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005395.1 Hibiscus syriacus cultivar Beakdansim tig00012362_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  235915

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6538--6573	17	2.1	17	89	0	54	2	19	19	58	1.52
9201--9234	17	1.9	17	88	5	50	35	0	0	64	0.94
9572--9680	54	2.0	54	100	0	218	40	6	1	51	1.38
11576--11607	2	16.0	2	100	0	64	50	0	0	50	1.00
18415--18449	16	2.1	17	89	5	54	17	45	22	14	1.84
20906--20974	24	2.8	26	76	14	83	18	8	14	57	1.62
22995--23061	22	3.0	22	100	0	134	26	26	26	19	1.99
23275--23333	30	2.0	30	93	0	100	32	23	3	40	1.71
23700--23851	68	2.3	67	87	1	205	17	26	26	28	1.98
23831--23873	21	2.0	21	86	0	59	16	25	27	30	1.97
29903--29969	22	3.0	22	97	0	125	28	26	25	19	1.99
30183--30241	30	2.0	30	89	0	91	33	22	3	40	1.70
30608--30759	68	2.3	67	88	1	214	17	26	27	28	1.97
30739--30781	21	2.0	21	86	0	59	16	25	27	30	1.97
31869--31926	17	3.4	17	95	0	98	17	24	41	17	1.90
31922--31990	9	7.1	10	73	12	63	28	30	21	18	1.97
31920--31990	19	3.7	19	84	5	81	28	29	23	18	1.98
35973--36033	21	3.1	20	78	17	58	22	8	9	59	1.56
35993--36034	19	2.1	21	86	8	61	21	4	11	61	1.48
36976--37006	2	15.5	2	100	0	62	51	0	0	48	1.00
40964--40994	15	2.1	15	93	0	53	45	0	0	54	0.99
48658--48726	23	3.0	23	80	0	84	31	24	24	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49195--49220	2	13.0	2	100	0	52	50	0	0	50	1.00
50416--50491	21	3.6	21	100	0	152	23	25	23	27	2.00
66356--66415	29	2.1	29	96	0	111	25	6	16	51	1.68
70460--70503	23	1.9	23	100	0	88	29	13	18	38	1.89
81897--82301	200	2.0	202	96	0	742	21	25	15	36	1.94
89844--89888	23	2.0	23	81	0	54	28	0	11	60	1.31
90595--90640	2	23.0	2	100	0	92	50	0	0	50	1.00
92689--92719	12	2.6	12	94	0	53	29	0	12	58	1.35
99540--99640	42	2.4	42	94	0	184	27	13	33	24	1.94
99568--99639	20	3.5	20	82	14	101	29	12	31	26	1.93
99545--99620	22	3.5	22	77	13	95	27	14	31	26	1.95
99726--99764	20	2.0	20	84	0	51	30	12	35	20	1.90
101430--101483	17	3.2	17	97	0	99	14	22	44	18	1.86
102409--102446	18	2.1	18	95	0	67	23	5	5	65	1.34
102511--102582	21	3.4	21	94	0	126	37	9	23	29	1.87
102716--102878	21	7.7	21	81	9	143	28	15	24	30	1.96
102992--103046	2	27.5	2	100	0	110	50	0	0	49	1.00
104147--104223	31	2.5	31	78	2	82	27	31	25	15	1.96
104100--104223	63	2.0	63	80	6	144	25	29	27	17	1.98
105093--105130	7	5.4	7	100	0	76	26	28	28	15	1.96
105120--105184	22	3.0	22	97	0	121	9	24	47	18	1.77
105127--105167	5	7.8	5	84	10	55	4	21	53	19	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105181--105278	19	5.2	18	80	15	108	28	30	27	13	1.94
105181--105298	29	4.1	28	81	8	98	29	28	27	14	1.95
105181--105298	38	3.1	38	82	11	118	29	28	27	14	1.95
105181--105298	9	12.3	9	78	10	101	29	28	27	14	1.95
111536--111612	31	2.5	31	78	2	82	27	31	25	15	1.96
111489--111612	63	2.0	63	80	6	144	25	29	27	17	1.98
112483--112520	7	5.4	7	100	0	76	26	28	28	15	1.96
112510--112552	22	2.0	22	95	0	77	9	25	46	18	1.79
112523--112558	17	2.1	18	94	5	65	11	27	44	16	1.82
112549--112646	19	5.2	18	81	15	117	27	30	28	13	1.94
112549--112666	38	3.1	38	83	11	127	28	28	27	14	1.95
112549--112666	29	4.1	28	81	12	116	28	28	27	14	1.95
112549--112666	9	12.3	9	80	10	110	28	28	27	14	1.95
129837--129879	21	2.0	21	86	0	59	30	27	25	16	1.97
129859--130007	66	2.3	66	89	2	219	26	26	27	18	1.98
130312--130383	29	2.5	29	90	0	108	37	11	12	38	1.79
130674--130740	22	3.0	22	100	0	134	19	26	26	26	1.99
132562--132588	12	2.2	12	100	0	54	44	7	48	0	1.31
136766--136808	21	2.0	21	86	0	59	30	27	25	16	1.97
136788--136937	67	2.3	66	88	3	212	26	27	27	18	1.98
137242--137313	29	2.5	29	90	0	108	37	11	12	38	1.79
137328--137386	30	1.9	31	86	3	84	37	6	22	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137606--137672	22	3.0	22	100	0	134	19	26	26	26	1.99
144212--144258	18	2.7	17	86	3	67	34	8	29	27	1.87
144611--145219	249	2.4	251	90	6	935	41	19	12	26	1.87
151663--151898	42	5.6	42	98	0	445	26	20	34	18	1.95
157048--157179	60	2.2	62	81	10	150	34	18	7	38	1.80
158794--158853	19	3.4	19	68	17	65	75	8	6	10	1.20
158796--158851	17	3.3	17	70	9	60	73	8	7	10	1.26
158784--158879	34	2.8	34	92	3	149	65	9	11	13	1.47
159653--159730	31	2.6	30	78	7	88	37	8	12	41	1.75
159821--159889	30	2.3	30	84	0	93	44	14	10	30	1.78
164703--164814	35	3.2	35	89	0	170	41	23	0	34	1.54
166577--166685	35	3.1	35	87	0	155	35	0	24	39	1.56
174956--174980	7	3.6	7	100	0	50	12	0	12	76	1.04
180965--181022	11	5.4	11	83	4	82	17	0	22	60	1.36
182748--182805	11	5.4	11	81	4	73	17	1	22	58	1.47
191549--191581	16	2.1	16	94	0	57	54	0	45	0	0.99
198220--198596	184	2.1	183	84	10	496	42	3	8	45	1.50
201140--201189	25	2.0	25	100	0	100	32	16	36	16	1.90
204265--204305	18	2.3	18	91	0	64	34	26	14	24	1.94
206337--206364	2	14.0	2	100	0	56	50	0	0	50	1.00
206653--206699	15	2.9	15	84	9	58	42	2	0	55	1.12
210059--210181	31	4.0	31	95	2	212	19	19	22	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212613--212639	12	2.2	12	100	0	54	40	33	0	25	1.56
216590--216628	19	2.1	19	90	0	60	48	2	0	48	1.15
220275--220307	17	1.9	17	88	11	50	33	0	0	66	0.92
220333--220372	20	2.0	19	90	9	62	75	0	2	22	0.93
224276--224325	24	2.1	24	100	0	100	18	12	36	34	1.87
226016--226050	14	2.5	14	85	0	52	34	22	22	20	1.97
235724--235789	26	2.5	26	78	9	71	56	1	1	40	1.18
235744--235809	27	2.4	27	87	9	91	54	0	3	42	1.15

Tables:   1

The End!