Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005396.1 Hibiscus syriacus cultivar Beakdansim tig00012367_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70218

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6883--7283
193
2.1
192
84
3
520
39
11
11
37
1.77
8161--8205
18
2.4
19
88
3
65
64
4
2
28
1.25
9790--9824
17
2.1
17
89
10
54
45
0
0
54
0.99
14753--14785
14
2.4
14
90
10
50
66
0
21
12
1.23
15224--15263
2
21.0
2
90
10
66
50
0
0
50
1.00
16872--17707
105
8.0
105
89
3
1163
21
19
26
32
1.97
30936--30992
23
2.4
23
85
2
69
43
24
7
24
1.79
31286--31395
44
2.6
44
83
9
138
42
17
17
22
1.89
31364--31519
41
3.9
41
82
3
172
36
17
20
25
1.94
31378--31512
40
3.3
41
83
4
166
37
17
17
27
1.92
34605--34642
17
2.4
16
86
8
51
63
5
7
23
1.42
43656--43700
19
2.4
19
96
0
81
42
15
2
40
1.59
48371--48400
15
1.9
16
93
6
53
33
3
0
63
1.11
48388--48435
25
1.9
25
83
8
62
43
4
0
52
1.20
48518--48568
23
2.2
23
80
10
59
45
0
0
54
0.99
49766--50138
187
2.0
187
99
0
737
23
16
39
20
1.92
50634--50666
4
8.5
4
93
6
59
24
0
0
75
0.80
50973--51006
2
17.0
2
100
0
68
50
0
0
50
1.00
52802--52833
3
10.7
3
100
0
64
68
0
0
31
0.90
54432--54471
19
2.1
19
90
0
62
20
32
20
27
1.97
56382--56460
32
2.5
31
85
4
113
12
31
30
25
1.93
63519--63580
18
3.2
20
78
19
62
61
0
1
37
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63575--63732
63
2.5
64
90
5
248
56
1
0
41
1.10
63592--63678
37
2.3
37
83
15
108
54
1
0
44
1.07
63635--63703
25
2.8
25
81
16
81
52
1
0
46
1.09
63640--63703
24
2.5
26
82
10
87
53
1
0
45
1.10
63691--63739
12
4.4
11
79
10
55
67
2
0
30
1.02
64793--64835
23
1.9
22
85
4
59
23
2
4
69
1.18
65868--66105
104
2.3
103
83
7
297
29
16
13
40
1.86
66500--66721
117
1.9
118
84
1
304
40
14
19
24
1.89

Tables:   1

The End!