Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005397.1 Hibiscus syriacus cultivar Beakdansim tig00012370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1218879
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 5
Found at i:597861 original size:2 final size:2
Alignment explanation
Indices: 597854--597889 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
597844 GTTTCATTTC
597854 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
597890 TCAGATTCAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:598980 original size:21 final size:20
Alignment explanation
Indices: 598946--598985 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
598936 GTTAACCAAA
*
598946 CCGTTGACTTTGACATTGAC
1 CCGTTAACTTTGACATTGAC
*
598966 CCGTTAACTGTTGACTTTGA
1 CCGTTAACT-TTGACATTGA
598986 ACGAAAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (20 bp):
CCGTTAACTTTGACATTGAC
Found at i:600547 original size:16 final size:16
Alignment explanation
Indices: 600526--600568 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
600516 TCTCAACTAA
* *
600526 AATAATATTATTGACT
1 AATAATATTATTAAAT
*
600542 AATAATATAATTAAAT
1 AATAATATTATTAAAT
600558 AATAATCATTA
1 AATAAT-ATTA
600569 GCAATTCTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (16 bp):
AATAATATTATTAAAT
Found at i:600735 original size:15 final size:15
Alignment explanation
Indices: 600715--600775 Score: 53
Period size: 14 Copynumber: 4.4 Consensus size: 15
600705 ATATAAAAAA
600715 TATACAAAATAATAC
1 TATACAAAATAATAC
*
600730 TATAC-ACAT-ATAC
1 TATACAAAATAATAC
*
600743 GTATA-TAAA-AA-A-
1 -TATACAAAATAATAC
600755 TATACAAAATAATAC
1 TATACAAAATAATAC
600770 TATACA
1 TATACA
600776 TATATACGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 14
0.68 0.06 0.26
Matches are distributed among these distances:
11 4 0.11
12 3 0.08
13 7 0.19
14 11 0.31
15 11 0.31
ACGTcount: A:0.57, C:0.13, G:0.02, T:0.28
Consensus pattern (15 bp):
TATACAAAATAATAC
Found at i:600784 original size:40 final size:40
Alignment explanation
Indices: 600695--600787 Score: 168
Period size: 40 Copynumber: 2.3 Consensus size: 40
600685 AAATAAAATA
*
600695 ATATATACGAATATAAAAAATATACAAAATAATACTATAC
1 ATATATACGTATATAAAAAATATACAAAATAATACTATAC
*
600735 ACATATACGTATATAAAAAATATACAAAATAATACTATAC
1 ATATATACGTATATAAAAAATATACAAAATAATACTATAC
600775 ATATATACGTATA
1 ATATATACGTATA
600788 ATATAGATGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.29
Consensus pattern (40 bp):
ATATATACGTATATAAAAAATATACAAAATAATACTATAC
Found at i:601437 original size:315 final size:315
Alignment explanation
Indices: 601055--601999 Score: 1676
Period size: 315 Copynumber: 3.0 Consensus size: 315
601045 TTTTATTTTA
*
601055 TTTCCTTTTTCAAATAAGATGAAAA-ATGGTCTAATTAAGAGATAATAACTTATTGCCCAACCTT
1 TTTCCTTTTTCAAATAAGATGAAAATATGGTCTAATTAAGAGATAATAACTTATTGCCCAAGCTT
*
601119 TGAGGGTGTTCATGTAAAAGAGTAATATGAAAAATGCTTAAGGGACATAATTGCTTCTGCAATAG
66 TGAGGGTGTTCATGTTAAAGAGTAATATGAAAAATGCTTAAGGGACATAATTGCTTCTGCAATAG
*
601184 ACATAATTTATTATTTTCGCACTTATCGTATTTTCATATTAATTTAACCTTTAAATTTATTTAAT
131 ACATAATTTATTATTTTCGCACTTATCGTATTTTCATATTAATTTAACCTTTAAATTTGTTTAAT
601249 TGCACCATTCTATACTCAATCCCTAACTTAAAAACCCTAAATTATAAATCTTGAGTTGTGATTTG
196 TGCACCATTCTATACTCAATCCCTAACTTAAAAACCCTAAATTATAAATCTTGAGTTGTGATTTG
*
601314 GTGCTTAGGGTTTATAGTTCAGAGGCTATGGCGTTATGGTTTAGGATTTAAGGTT
261 GTGTTTAGGGTTTATAGTTCAGAGGCTATGGCGTTATGGTTTAGGATTTAAGGTT
601369 TTTCCTTTTTCAAATAAGATGAAAATATGGTCTAATTAAGAGATAATAACTTATTGCCCAAGCTT
1 TTTCCTTTTTCAAATAAGATGAAAATATGGTCTAATTAAGAGATAATAACTTATTGCCCAAGCTT
*
601434 TGAGGGTGTTCATGTTAAAGAGTAATATGAAAAATGCTTAAGGGACATAATTGCTTCTTCAATAG
66 TGAGGGTGTTCATGTTAAAGAGTAATATGAAAAATGCTTAAGGGACATAATTGCTTCTGCAATAG
* *
601499 ACATAATTTATTATTTTCGTACTTATCGTATTTTCATATTAATTTAACTTTTAAATTTGTTTAAT
131 ACATAATTTATTATTTTCGCACTTATCGTATTTTCATATTAATTTAACCTTTAAATTTGTTTAAT
** * *
601564 TGTTCCATTCTATACTCAATTCCTAACTTAAAAACCCTAAATTATAAATCTTGAGTTGTGATTTA
196 TGCACCATTCTATACTCAATCCCTAACTTAAAAACCCTAAATTATAAATCTTGAGTTGTGATTTG
601629 GTGTTTAGGGTTTATAGTTCAGAGGCTATGGCGTTATGGTTTAGGATTTAAGGTT
261 GTGTTTAGGGTTTATAGTTCAGAGGCTATGGCGTTATGGTTTAGGATTTAAGGTT
* *
601684 TTTCCTTTTTCAAATAAGGTGAAAATATGGTCTAATTAAGAGATAATAACTCATTGCCCAAGCTT
1 TTTCCTTTTTCAAATAAGATGAAAATATGGTCTAATTAAGAGATAATAACTTATTGCCCAAGCTT
* * * *
601749 TGAGGGTGTTCATGTTAAAGAGTAATATGAAAAATGCTTAAGGGACATAATTACTTATGTAATGG
66 TGAGGGTGTTCATGTTAAAGAGTAATATGAAAAATGCTTAAGGGACATAATTGCTTCTGCAATAG
601814 ACATAATTTATTATTTTCGCACTTATCGTATTTTCATATTAATTTAACCTTTAAATTTGTTTAAT
131 ACATAATTTATTATTTTCGCACTTATCGTATTTTCATATTAATTTAACCTTTAAATTTGTTTAAT
*
601879 TGCATCATTCTATACTCAATCCCTAACTTAAAAACCCTAAATTATAAATCTTGAGTTGTGATTTG
196 TGCACCATTCTATACTCAATCCCTAACTTAAAAACCCTAAATTATAAATCTTGAGTTGTGATTTG
* * * * *
601944 GTGTTTAGGGTTTATAGTTCAAAGGCCATGGTGTTATGGTTTAGGGTTTAGGGTT
261 GTGTTTAGGGTTTATAGTTCAGAGGCTATGGCGTTATGGTTTAGGATTTAAGGTT
601999 T
1 T
602000 AGGGTTTTAA
Statistics
Matches: 600, Mismatches: 30, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
314 25 0.04
315 575 0.96
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (315 bp):
TTTCCTTTTTCAAATAAGATGAAAATATGGTCTAATTAAGAGATAATAACTTATTGCCCAAGCTT
TGAGGGTGTTCATGTTAAAGAGTAATATGAAAAATGCTTAAGGGACATAATTGCTTCTGCAATAG
ACATAATTTATTATTTTCGCACTTATCGTATTTTCATATTAATTTAACCTTTAAATTTGTTTAAT
TGCACCATTCTATACTCAATCCCTAACTTAAAAACCCTAAATTATAAATCTTGAGTTGTGATTTG
GTGTTTAGGGTTTATAGTTCAGAGGCTATGGCGTTATGGTTTAGGATTTAAGGTT
Found at i:601993 original size:7 final size:7
Alignment explanation
Indices: 601981--602006 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
601971 ATGGTGTTAT
601981 GGTTTAG
1 GGTTTAG
601988 GGTTTAG
1 GGTTTAG
601995 GGTTTAG
1 GGTTTAG
602002 GGTTT
1 GGTTT
602007 TAAGTTAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.42, T:0.46
Consensus pattern (7 bp):
GGTTTAG
Found at i:604188 original size:16 final size:17
Alignment explanation
Indices: 604151--604189 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
604141 TTCAAAAATT
604151 TATAATTTATAAAGATA
1 TATAATTTATAAAGATA
604168 TATAATTTA-AAA-ATAA
1 TATAATTTATAAAGAT-A
604184 TATAAT
1 TATAAT
604190 ATAATACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 2 0.10
16 10 0.48
17 9 0.43
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (17 bp):
TATAATTTATAAAGATA
Found at i:608611 original size:16 final size:17
Alignment explanation
Indices: 608590--608623 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
608580 GCAAGGACAT
*
608590 ATATATAA-GATTTTAA
1 ATATATAATAATTTTAA
608606 ATATATAATAATTTTAA
1 ATATATAATAATTTTAA
608623 A
1 A
608624 ATTTGAAGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
ATATATAATAATTTTAA
Found at i:612812 original size:30 final size:32
Alignment explanation
Indices: 612773--612840 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 32
612763 ATTGGAAAAC
*
612773 AAACTATCAC-TGTCT-CCTATTTTAGTCACCA
1 AAACTATCACAT-TCTACCTATTTTAGTAACCA
*
612804 AAAC-ATCACATTTTACCTATTTTAGTAACC-
1 AAACTATCACATTCTACCTATTTTAGTAACCA
612834 AAACTAT
1 AAACTAT
612841 TTTTTCTACA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
30 11 0.34
31 21 0.66
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.35
Consensus pattern (32 bp):
AAACTATCACATTCTACCTATTTTAGTAACCA
Found at i:615180 original size:10 final size:10
Alignment explanation
Indices: 615165--615232 Score: 55
Period size: 10 Copynumber: 6.1 Consensus size: 10
615155 CATTTAAATA
615165 ATAAACGAAC
1 ATAAACGAAC
*
615175 ATAAACAAAC
1 ATAAACGAAC
*
615185 ACGAACGAACGAAC
1 A-TAA---ACGAAC
615199 ATAAACGAACAC
1 ATAAACG-A-AC
615211 AATAAACGAAC
1 -ATAAACGAAC
615222 ATAAACGAAC
1 ATAAACGAAC
615232 A
1 A
615233 ACACAAACAC
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
10 24 0.51
11 5 0.11
12 3 0.06
13 9 0.19
14 6 0.13
ACGTcount: A:0.60, C:0.22, G:0.10, T:0.07
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:615235 original size:13 final size:13
Alignment explanation
Indices: 615188--615240 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
615178 AACAAACACG
615188 AACGAACGAACATA
1 AACGAAC-AACATA
615202 AACGAAC-ACAATA
1 AACGAACAAC-ATA
615215 AACG---AACATA
1 AACGAACAACATA
*
615225 AACGAACAACACA
1 AACGAACAACATA
615238 AAC
1 AAC
615241 ACAAAAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 11
0.73 0.02 0.24
Matches are distributed among these distances:
10 7 0.21
11 2 0.06
12 2 0.06
13 15 0.45
14 7 0.21
ACGTcount: A:0.60, C:0.25, G:0.09, T:0.06
Consensus pattern (13 bp):
AACGAACAACATA
Found at i:615240 original size:23 final size:23
Alignment explanation
Indices: 615167--615240 Score: 96
Period size: 23 Copynumber: 3.2 Consensus size: 23
615157 TTTAAATAAT
*
615167 AAACGAACATAAACAAACACGAAC
1 AAACGAACATAAACGAACAC-AAC
* *
615191 GAACGAACATAAACGAACACAAT
1 AAACGAACATAAACGAACACAAC
615214 AAACGAACATAAACGAACA-ACAC
1 AAACGAACATAAACGAACACA-AC
615237 AAAC
1 AAAC
615241 ACAAAAAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
22 1 0.02
23 25 0.57
24 18 0.41
ACGTcount: A:0.61, C:0.24, G:0.09, T:0.05
Consensus pattern (23 bp):
AAACGAACATAAACGAACACAAC
Found at i:615524 original size:24 final size:26
Alignment explanation
Indices: 615495--615546 Score: 81
Period size: 24 Copynumber: 2.1 Consensus size: 26
615485 GCCCTCTGTT
*
615495 CGAACATAAATGAACATA-AAT-GAA
1 CGAACATAAACGAACATATAATCGAA
615519 CGAACATAAACGAACATATAATCGAA
1 CGAACATAAACGAACATATAATCGAA
615545 CG
1 CG
615547 TTCACGAACG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 17 0.68
25 3 0.12
26 5 0.20
ACGTcount: A:0.54, C:0.17, G:0.13, T:0.15
Consensus pattern (26 bp):
CGAACATAAACGAACATATAATCGAA
Found at i:615794 original size:38 final size:38
Alignment explanation
Indices: 615751--615826 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
615741 ATGTTCAAAG
615751 ATAACTTTCAACCATTTGACAATTGAAGACTCACACCT
1 ATAACTTTCAACCATTTGACAATTGAAGACTCACACCT
* *
615789 ATAACTTTCAGCCATTTGGCAATTGAAGACTCACACCT
1 ATAACTTTCAACCATTTGACAATTGAAGACTCACACCT
615827 TTGATATTCC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (38 bp):
ATAACTTTCAACCATTTGACAATTGAAGACTCACACCT
Found at i:622332 original size:22 final size:22
Alignment explanation
Indices: 622275--622320 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
622265 CTTACAAAAA
* *
622275 TTGTTCAAGTTTTTATCTTATT
1 TTGTACAAATTTTTATCTTATT
*
622297 TTGTACAAATTTTTATCTTGTT
1 TTGTACAAATTTTTATCTTATT
622319 TT
1 TT
622321 TGTAAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.63
Consensus pattern (22 bp):
TTGTACAAATTTTTATCTTATT
Found at i:622494 original size:21 final size:21
Alignment explanation
Indices: 622461--622550 Score: 139
Period size: 21 Copynumber: 4.4 Consensus size: 21
622451 TATCGCAAAT
622461 TCGCAAT-GTGAACAGTGTTA
1 TCGCAATGGTGAACAGTGTTA
* *
622481 TCGCAATGGTGAACATTATTA
1 TCGCAATGGTGAACAGTGTTA
*
622502 TCGCAACGGTGAACAGTGTTA
1 TCGCAATGGTGAACAGTGTTA
622523 TCGCAAT-GTGAACAGTGTTA
1 TCGCAATGGTGAACAGTGTTA
622543 TCGCAATG
1 TCGCAATG
622551 ATTTTGGACT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
20 27 0.44
21 35 0.56
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (21 bp):
TCGCAATGGTGAACAGTGTTA
Found at i:622604 original size:21 final size:21
Alignment explanation
Indices: 622580--622630 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
622570 CGAATTTGGA
*
622580 CTATCGCAACGGTGGACAGTG
1 CTATCGCAACGGTGAACAGTG
*
622601 CTATTGCAACGGTGAACAGTG
1 CTATCGCAACGGTGAACAGTG
*
622622 TTATCGCAA
1 CTATCGCAA
622631 TGATTTTGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (21 bp):
CTATCGCAACGGTGAACAGTG
Found at i:622630 original size:82 final size:81
Alignment explanation
Indices: 622500--622669 Score: 286
Period size: 82 Copynumber: 2.1 Consensus size: 81
622490 TGAACATTAT
* *
622500 TATCGCAACGGTGAACAGTGTTATCGCAATGTGAACAGTGTTATCGCAATGATTTTGGACTATCG
1 TATCGCAACGGTGAACAGTGCTATCGCAAGGTGAACAGTGTTATCGCAATGATTTTGGACTATCG
*
622565 CAACGCGAATTTGGAC
66 CAACGCGAATTCGGAC
* *
622581 TATCGCAACGGTGGACAGTGCTATTGCAACGGTGAACAGTGTTATCGCAATGATTTTGGACTATC
1 TATCGCAACGGTGAACAGTGCTATCGCAA-GGTGAACAGTGTTATCGCAATGATTTTGGACTATC
622646 GCAACGCGAATTCGGAC
65 GCAACGCGAATTCGGAC
622663 TATCGCA
1 TATCGCA
622670 TTGCGATAGT
Statistics
Matches: 83, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
81 26 0.31
82 57 0.69
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (81 bp):
TATCGCAACGGTGAACAGTGCTATCGCAAGGTGAACAGTGTTATCGCAATGATTTTGGACTATCG
CAACGCGAATTCGGAC
Found at i:622766 original size:19 final size:19
Alignment explanation
Indices: 622742--622778 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
622732 TGCGATACTG
*
622742 GAGATCGCGTTGCGATTTA
1 GAGATCGCATTGCGATTTA
*
622761 GAGATCGTATTGCGATTT
1 GAGATCGCATTGCGATTT
622779 TGTTGGTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.35
Consensus pattern (19 bp):
GAGATCGCATTGCGATTTA
Found at i:625113 original size:20 final size:20
Alignment explanation
Indices: 625088--625125 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
625078 TTTGGTTCAC
*
625088 GGAATATAAGATTACCAGTG
1 GGAATAAAAGATTACCAGTG
625108 GGAATAAAAGATTACCAG
1 GGAATAAAAGATTACCAG
625126 GGAATAGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.11, G:0.24, T:0.21
Consensus pattern (20 bp):
GGAATAAAAGATTACCAGTG
Found at i:625128 original size:18 final size:19
Alignment explanation
Indices: 625088--625131 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
625078 TTTGGTTCAC
*
625088 GGAATATAAGATTACCAGTG
1 GGAATAAAAGATTACCAG-G
625108 GGAATAAAAGATTACCA-G
1 GGAATAAAAGATTACCAGG
625126 GGAATA
1 GGAATA
625132 GGATTACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
20 16 0.70
ACGTcount: A:0.45, C:0.09, G:0.25, T:0.20
Consensus pattern (19 bp):
GGAATAAAAGATTACCAGG
Found at i:626734 original size:2 final size:2
Alignment explanation
Indices: 626727--626777 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
626717 TATTGCATAA
626727 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
626769 AT AT A- AT AT
1 AT AT AT AT AT
626778 TATGTTATTG
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:627799 original size:2 final size:2
Alignment explanation
Indices: 627792--627820 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
627782 TATTGCATAA
627792 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
627821 ATTATGTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:629320 original size:2 final size:2
Alignment explanation
Indices: 629313--629339 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
629303 AATCACGTAA
629313 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
629340 AACACACGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:636093 original size:2 final size:2
Alignment explanation
Indices: 636086--636133 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
636076 TTATACTGGC
636086 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
636128 AT AT AT
1 AT AT AT
636134 CAAAACATGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:636205 original size:20 final size:21
Alignment explanation
Indices: 636182--636223 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
636172 ATATTTGAAC
*
636182 ATATATATAAA-TATTTTTTA
1 ATATATATAAATTATATTTTA
*
636202 ATATCTATAAATTATATTTTA
1 ATATATATAAATTATATTTTA
636223 A
1 A
636224 AAACTAAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
ATATATATAAATTATATTTTA
Found at i:640130 original size:6 final size:6
Alignment explanation
Indices: 640119--640159 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
640109 TGTGTTTAAT
640119 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATT
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATT
640160 TTGATTTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AAATTA
Found at i:643698 original size:6 final size:6
Alignment explanation
Indices: 643687--643730 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
643677 GCAACGCGAT
643687 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC-CG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC
643731 CGAGACGAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.13
6 33 0.87
ACGTcount: A:0.32, C:0.52, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:644422 original size:6 final size:6
Alignment explanation
Indices: 644413--644443 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
644403 CGCCGCCGTC
644413 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
644444 AATACGTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.35
Consensus pattern (6 bp):
TCGTGG
Found at i:644574 original size:20 final size:20
Alignment explanation
Indices: 644549--644682 Score: 115
Period size: 20 Copynumber: 6.4 Consensus size: 20
644539 ATTTTCAACG
*
644549 TTGCGATTCTCTCAGTCGCA
1 TTGCGATTCTCTCAATCGCA
* *
644569 TTGCGATTATCTCAGTCGCA
1 TTGCGATTCTCTCAATCGCA
* *
644589 TTGCGATTTTCTTCTAAATCGCG
1 TTGCGA--TTC-TCTCAATCGCA
*
644612 TTGCGACTCTCTCAATCGCA
1 TTGCGATTCTCTCAATCGCA
* * *
644632 TTGCGATTATATAAATCGCA
1 TTGCGATTCTCTCAATCGCA
* *
644652 TTGCGATTTTCTTCTAAATCGCG
1 TTGCGA--TTC-TCTCAATCGCA
644675 TTGCGATT
1 TTGCGATT
644683 TTGATATCGC
Statistics
Matches: 93, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
20 56 0.60
21 4 0.04
22 4 0.04
23 29 0.31
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTCTCAATCGCA
Found at i:644651 original size:63 final size:63
Alignment explanation
Indices: 644547--644680 Score: 223
Period size: 63 Copynumber: 2.1 Consensus size: 63
644537 CGATTTTCAA
* * * * *
644547 CGTTGCGATTCTCTCAGTCGCATTGCGATTATCTCAGTCGCATTGCGATTTTCTTCTAAATCG
1 CGTTGCGACTCTCTCAATCGCATTGCGATTATATAAATCGCATTGCGATTTTCTTCTAAATCG
644610 CGTTGCGACTCTCTCAATCGCATTGCGATTATATAAATCGCATTGCGATTTTCTTCTAAATCG
1 CGTTGCGACTCTCTCAATCGCATTGCGATTATATAAATCGCATTGCGATTTTCTTCTAAATCG
644673 CGTTGCGA
1 CGTTGCGA
644681 TTTTGATATC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
63 66 1.00
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.37
Consensus pattern (63 bp):
CGTTGCGACTCTCTCAATCGCATTGCGATTATATAAATCGCATTGCGATTTTCTTCTAAATCG
Found at i:655137 original size:20 final size:20
Alignment explanation
Indices: 655112--655149 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
655102 TATAATAATT
*
655112 AATTTAAATTTTAATATACG
1 AATTTAAATTATAATATACG
*
655132 AATTTATATTATAATATA
1 AATTTAAATTATAATATA
655150 TAATTTTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (20 bp):
AATTTAAATTATAATATACG
Found at i:660596 original size:3 final size:3
Alignment explanation
Indices: 660590--660661 Score: 90
Period size: 3 Copynumber: 24.0 Consensus size: 3
660580 TATTTAGTAG
* ** * *
660590 TAA TAA TAA TAA TAC TAA CGA TGA TAA TAA TAA TAA TAA TAA TAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
660638 TAA TAG TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA
660662 AAAAATGTGA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:660871 original size:2 final size:2
Alignment explanation
Indices: 660864--660949 Score: 158
Period size: 2 Copynumber: 44.0 Consensus size: 2
660854 TGTACTAACC
660864 AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
660905 AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
660946 AT AT
1 AT AT
660950 TATGCGGAAA
Statistics
Matches: 82, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
1 2 0.02
2 80 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:663889 original size:19 final size:19
Alignment explanation
Indices: 663865--663912 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
663855 AAAAATATGA
663865 AAAATCTATATTTTCAAAC
1 AAAATCTATATTTTCAAAC
663884 AAAATCTATATTTTCAAAC
1 AAAATCTATATTTTCAAAC
663903 AAAATCTATA
1 AAAATCTATA
663913 AACAATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAATCTATATTTTCAAAC
Found at i:664077 original size:20 final size:20
Alignment explanation
Indices: 664052--664119 Score: 102
Period size: 20 Copynumber: 3.5 Consensus size: 20
664042 ATAATGAAAA
664052 TGACTATCGCAACGCGAATT
1 TGACTATCGCAACGCGAATT
*
664072 TGACTATCGCAACGCGAA-A
1 TGACTATCGCAACGCGAATT
**
664091 TGAAAATCGCAACGCGAATT
1 TGACTATCGCAACGCGAATT
664111 TGACTATCG
1 TGACTATCG
664120 TTGCGATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 16 0.39
20 25 0.61
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.22
Consensus pattern (20 bp):
TGACTATCGCAACGCGAATT
Found at i:664101 original size:19 final size:20
Alignment explanation
Indices: 664057--664109 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
664047 GAAAATGACT
* **
664057 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAATATGAAA
664077 ATCGCAACGCGAA-ATGAAA
1 ATCGCAACGCGAATATGAAA
664096 ATCGCAACGCGAAT
1 ATCGCAACGCGAAT
664110 TTGACTATCG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.17
Consensus pattern (20 bp):
ATCGCAACGCGAATATGAAA
Found at i:664718 original size:21 final size:21
Alignment explanation
Indices: 664688--664762 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
664678 TGCTTTGAAA
*
664688 ATCGCATTGCGATTTTATATT
1 ATCGCGTTGCGATTTTATATT
* * * *
664709 ATCGCGTTGCAATAGTCAGA--
1 ATCGCGTTGCGAT-TTTATATT
* *
664729 ATCGCGTTGCGATTATGTATT
1 ATCGCGTTGCGATTTTATATT
664750 ATCGCGTTGCGAT
1 ATCGCGTTGCGAT
664763 AGTCAGAATC
Statistics
Matches: 40, Mismatches: 11, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
19 1 0.03
20 12 0.30
21 24 0.60
22 3 0.08
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (21 bp):
ATCGCGTTGCGATTTTATATT
Found at i:664750 original size:41 final size:41
Alignment explanation
Indices: 664687--664783 Score: 149
Period size: 41 Copynumber: 2.4 Consensus size: 41
664677 GTGCTTTGAA
* *
664687 AATCGCATTGCGATTTTATATTATCGCGTTGCAATAGTCAG
1 AATCGCGTTGCGATTATATATTATCGCGTTGCAATAGTCAG
* *
664728 AATCGCGTTGCGATTATGTATTATCGCGTTGCGATAGTCAG
1 AATCGCGTTGCGATTATATATTATCGCGTTGCAATAGTCAG
*
664769 AATCGTGTTGCGATT
1 AATCGCGTTGCGATT
664784 TACATATTCG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (41 bp):
AATCGCGTTGCGATTATATATTATCGCGTTGCAATAGTCAG
Found at i:664780 original size:20 final size:20
Alignment explanation
Indices: 664709--664782 Score: 87
Period size: 20 Copynumber: 3.6 Consensus size: 20
664699 ATTTTATATT
*
664709 ATCGCGTTGCAATAGTCAGA
1 ATCGCGTTGCGATAGTCAGA
**
664729 ATCGCGTTGCGATTATGT-ATT
1 ATCGCGTTGCGA-TA-GTCAGA
664750 ATCGCGTTGCGATAGTCAGA
1 ATCGCGTTGCGATAGTCAGA
*
664770 ATCGTGTTGCGAT
1 ATCGCGTTGCGAT
664783 TTACATATTC
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
19 2 0.04
20 26 0.58
21 15 0.33
22 2 0.04
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAGA
Found at i:664890 original size:20 final size:19
Alignment explanation
Indices: 664867--664912 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
664857 GGAAACTGAT
* *
664867 TTGCGATACTGGAGATCGCG
1 TTGCGAT-CTAGAGATCGCA
*
664887 TTGCGATTTAGAGATCGCA
1 TTGCGATCTAGAGATCGCA
664906 TTGCGAT
1 TTGCGAT
664913 TTTGTTGGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (19 bp):
TTGCGATCTAGAGATCGCA
Found at i:664902 original size:19 final size:19
Alignment explanation
Indices: 664878--664914 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
664868 TGCGATACTG
*
664878 GAGATCGCGTTGCGATTTA
1 GAGATCGCATTGCGATTTA
664897 GAGATCGCATTGCGATTT
1 GAGATCGCATTGCGATTT
664915 TGTTGGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (19 bp):
GAGATCGCATTGCGATTTA
Found at i:666662 original size:2 final size:2
Alignment explanation
Indices: 666655--666694 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
666645 TATTTTTACG
666655 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
666695 TCAAATAACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:667592 original size:17 final size:17
Alignment explanation
Indices: 667565--667598 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
667555 CGTCTCCTTA
667565 AAAATTTAAAATTATTAT
1 AAAATTTAAAATT-TTAT
667583 AAAA-TTAAAATTTTAT
1 AAAATTTAAAATTTTAT
667599 GTATTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 8 0.50
18 4 0.25
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAATTTAAAATTTTAT
Found at i:667702 original size:14 final size:14
Alignment explanation
Indices: 667679--667718 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
667669 AATCTTACGG
*
667679 TAATCGTTGCTTGT
1 TAATCATTGCTTGT
667693 TAATCATTGCTTGT
1 TAATCATTGCTTGT
667707 TAATCATTGCTT
1 TAATCATTGCTT
667719 ATACCTTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.50
Consensus pattern (14 bp):
TAATCATTGCTTGT
Found at i:675240 original size:24 final size:24
Alignment explanation
Indices: 675194--675240 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
675184 TGAGAATTGT
* **
675194 TTCATGCATTTCCTTGCTTGTTTC
1 TTCATGCATTTACTTGCAGGTTTC
*
675218 TTCATGCTTTTACTTGCAGGTTT
1 TTCATGCATTTACTTGCAGGTTT
675241 ACAGTGAAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.21, G:0.15, T:0.53
Consensus pattern (24 bp):
TTCATGCATTTACTTGCAGGTTTC
Found at i:682055 original size:3 final size:3
Alignment explanation
Indices: 682047--682124 Score: 156
Period size: 3 Copynumber: 26.0 Consensus size: 3
682037 AAAATTAGAC
682047 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
682095 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
682125 CTGTACCTTG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:687329 original size:30 final size:30
Alignment explanation
Indices: 687287--687361 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 30
687277 TGGGTTGACC
* *
687287 AATATT-AAAAAATT-GAACTAATAATAATA
1 AATATTAAAAAAATTAAAACT-ATAATAACA
*
687316 AATATTAAAAAAATTAAAACTTTAATAACA
1 AATATTAAAAAAATTAAAACTATAATAACA
687346 AATATTAAAAACAATT
1 AATATTAAAAA-AATT
687362 TTATTATAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
29 6 0.15
30 26 0.65
31 8 0.20
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.31
Consensus pattern (30 bp):
AATATTAAAAAAATTAAAACTATAATAACA
Found at i:693990 original size:65 final size:65
Alignment explanation
Indices: 693909--694040 Score: 228
Period size: 65 Copynumber: 2.0 Consensus size: 65
693899 ACTTTGGTCA
693909 TCCAAACTATCAAAAAGAACTATTAATATGCCATAAATCATCACACCTAATTTCTTAATTTTATT
1 TCCAAACTATCAAAAAGAACTATTAATATGCCATAAATCATCACACCTAATTTCTTAATTTTATT
* * * *
693974 TCCAAACTATCAAAAAGAATTATTAATATGCCATAAGTCTTCACACCTAATTTCTTAATTTTTTT
1 TCCAAACTATCAAAAAGAACTATTAATATGCCATAAATCATCACACCTAATTTCTTAATTTTATT
694039 TC
1 TC
694041 TGCATTTAAT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.38
Consensus pattern (65 bp):
TCCAAACTATCAAAAAGAACTATTAATATGCCATAAATCATCACACCTAATTTCTTAATTTTATT
Found at i:701344 original size:39 final size:39
Alignment explanation
Indices: 701283--701362 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
701273 TTAGATCAAC
*
701283 AATCATTGATTATATGACGAAATAAAATAATTGAATATA
1 AATCATTGATTATACGACGAAATAAAATAATTGAATATA
* *
701322 AATCATTGATTATACGATGAAATACAATAATTGAATATA
1 AATCATTGATTATACGACGAAATAAAATAATTGAATATA
701361 AA
1 AA
701363 ATTAAAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.33
Consensus pattern (39 bp):
AATCATTGATTATACGACGAAATAAAATAATTGAATATA
Found at i:707858 original size:34 final size:34
Alignment explanation
Indices: 707810--707877 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
707800 GGCCAAGATC
707810 AAAGACAAGGAGGGTATTCCACCAGATCAGCAGA
1 AAAGACAAGGAGGGTATTCCACCAGATCAGCAGA
*
707844 AAAGGCAAGGAGGGTATTCCACCAGATCAGCAGA
1 AAAGACAAGGAGGGTATTCCACCAGATCAGCAGA
707878 GGTTAATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.40, C:0.21, G:0.28, T:0.12
Consensus pattern (34 bp):
AAAGACAAGGAGGGTATTCCACCAGATCAGCAGA
Found at i:709779 original size:29 final size:29
Alignment explanation
Indices: 709728--709785 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
709718 ATGTTGGTCG
*
709728 TAGGTCGCCATGCCTTCAGGGCGACCTAC
1 TAGGTCGCCATGCCTTCACGGCGACCTAC
* * *
709757 TAGGTCGCCATGTCTTCCCGGCGAGCTAC
1 TAGGTCGCCATGCCTTCACGGCGACCTAC
709786 AAGAGATTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.16, C:0.34, G:0.28, T:0.22
Consensus pattern (29 bp):
TAGGTCGCCATGCCTTCACGGCGACCTAC
Found at i:709855 original size:10 final size:9
Alignment explanation
Indices: 709842--709905 Score: 65
Period size: 10 Copynumber: 6.4 Consensus size: 9
709832 GGCCATCCGA
709842 CCGAGGCCAT
1 CCGAGG-CAT
709852 CCGAGAGCAT
1 CCGAG-GCAT
*
709862 CCGAAAGCAT
1 CCG-AGGCAT
709872 CCGAGGTCAT
1 CCGAGG-CAT
709882 CCGAGAGCAT
1 CCGAG-GCAT
709892 CCGAGGCCAT
1 CCGAGG-CAT
709902 CCGA
1 CCGA
709906 ACGAGCTATG
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
9 3 0.06
10 41 0.87
11 3 0.06
ACGTcount: A:0.27, C:0.34, G:0.28, T:0.11
Consensus pattern (9 bp):
CCGAGGCAT
Found at i:709872 original size:20 final size:20
Alignment explanation
Indices: 709849--709906 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
709839 CGACCGAGGC
709849 CATCCGAGAG-CATCCGAAAG
1 CATCCGAG-GCCATCCGAAAG
* *
709869 CATCCGAGGTCATCCGAGAG
1 CATCCGAGGCCATCCGAAAG
709889 CATCCGAGGCCATCCGAA
1 CATCCGAGGCCATCCGAA
709907 CGAGCTATGC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 1 0.03
20 33 0.97
ACGTcount: A:0.29, C:0.33, G:0.26, T:0.12
Consensus pattern (20 bp):
CATCCGAGGCCATCCGAAAG
Found at i:709927 original size:33 final size:33
Alignment explanation
Indices: 709883--709963 Score: 117
Period size: 33 Copynumber: 2.5 Consensus size: 33
709873 CGAGGTCATC
* *
709883 CGAGAGCATCCGAGGCCATCCGAACGAGCTATG
1 CGAGGGCATCCGAGGCCAACCGAACGAGCTATG
* *
709916 CGAGGGCATCCGAGGTCAACCGAGCGAGCTATG
1 CGAGGGCATCCGAGGCCAACCGAACGAGCTATG
*
709949 CGAGGGAATCCGAGG
1 CGAGGGCATCCGAGG
709964 GAAGCCGAGC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.26, C:0.27, G:0.36, T:0.11
Consensus pattern (33 bp):
CGAGGGCATCCGAGGCCAACCGAACGAGCTATG
Found at i:709972 original size:33 final size:33
Alignment explanation
Indices: 709890--709976 Score: 113
Period size: 33 Copynumber: 2.6 Consensus size: 33
709880 ATCCGAGAGC
* * * *
709890 ATCCGAGGCCATCCGAACGAGCTATGCGAGGGC
1 ATCCGAGGTCAACCGAGCGAGCTATGCGAGGGA
709923 ATCCGAGGTCAACCGAGCGAGCTATGCGAGGGA
1 ATCCGAGGTCAACCGAGCGAGCTATGCGAGGGA
*
709956 ATCCGAGG-GAAGCCGAGCGAG
1 ATCCGAGGTCAA-CCGAGCGAG
709977 GGTAGGTCGC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 2 0.04
33 46 0.96
ACGTcount: A:0.26, C:0.26, G:0.37, T:0.10
Consensus pattern (33 bp):
ATCCGAGGTCAACCGAGCGAGCTATGCGAGGGA
Found at i:710054 original size:50 final size:50
Alignment explanation
Indices: 709979--710077 Score: 180
Period size: 50 Copynumber: 2.0 Consensus size: 50
709969 CGAGCGAGGG
* *
709979 TAGGTCGCCCGGAGGGTATGGCGACCTATTTGTTGGGACGTGCATGTGCA
1 TAGGTCGCCCGGAGGGCATGGCGACCTATGTGTTGGGACGTGCATGTGCA
710029 TAGGTCGCCCGGAGGGCATGGCGACCTATGTGTTGGGACGTGCATGTGC
1 TAGGTCGCCCGGAGGGCATGGCGACCTATGTGTTGGGACGTGCATGTGC
710078 CATGCAACAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.15, C:0.21, G:0.39, T:0.24
Consensus pattern (50 bp):
TAGGTCGCCCGGAGGGCATGGCGACCTATGTGTTGGGACGTGCATGTGCA
Found at i:710157 original size:29 final size:29
Alignment explanation
Indices: 710115--710171 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
710105 GAGCAAGGGT
710115 AGGTCGCCCGGAGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGTGCATGGCGACCTACA
*
710144 AGGTCGTCCGGAGTGCATGGCGACCTAC
1 AGGTCGCCCGGAGTGCATGGCGACCTAC
710172 GGCCAACACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.19, C:0.30, G:0.35, T:0.16
Consensus pattern (29 bp):
AGGTCGCCCGGAGTGCATGGCGACCTACA
Found at i:712572 original size:60 final size:60
Alignment explanation
Indices: 712443--712694 Score: 219
Period size: 60 Copynumber: 4.1 Consensus size: 60
712433 TATTTGAATA
* * *
712443 AATTTAGGGATGAAATTGAAA-GATTCAAAAGTTT-GGGACTAATTTAGAATGAGA-TCTAT
1 AATTTAGGGATAAAATTGAAATG-TTTAAAAGTTTAAGGACTAATTTAGAATGAGAGTC-AT
* * *
712502 AGTTTGGGGATAAAATTGAAATGTTTAAAAGTTTAAGGAATAATTTAGAATGAGAGTCAT
1 AATTTAGGGATAAAATTGAAATGTTTAAAAGTTTAAGGACTAATTTAGAATGAGAGTCAT
* * * *
712562 AATTTAGGGATGAAATT-AGAATGTTTAAAAGTTGAAGGACCAATTTAAAATGAGAGTCAT
1 AATTTAGGGATAAAATTGA-AATGTTTAAAAGTTTAAGGACTAATTTAGAATGAGAGTCAT
* * * *
712622 AGTTTAAGGATATATGATGCAATT-AGAATGTTTAAAAATTTAAGGACCAATTT-GAGATGAGAG
1 AATTT-AGG-GATA--A---AATTGA-AATGTTTAAAAGTTTAAGGACTAATTTAGA-ATGAGAG
712685 TCAT
57 TCAT
*
712689 AGTTTA
1 AATTTA
712695 TGTGATAGCT
Statistics
Matches: 162, Mismatches: 19, Indels: 17
0.82 0.10 0.09
Matches are distributed among these distances:
59 29 0.18
60 76 0.47
61 5 0.03
62 2 0.01
64 1 0.01
66 2 0.01
67 47 0.29
ACGTcount: A:0.41, C:0.04, G:0.22, T:0.33
Consensus pattern (60 bp):
AATTTAGGGATAAAATTGAAATGTTTAAAAGTTTAAGGACTAATTTAGAATGAGAGTCAT
Found at i:712749 original size:40 final size:40
Alignment explanation
Indices: 712705--712782 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
712695 TGTGATAGCT
**
712705 CATAATCAGTGATGGAGTCGCACATAATTGCGGGTGAGTA
1 CATAATCAGTGACAGAGTCGCACATAATTGCGGGTGAGTA
* *
712745 CATAATCAGTGGCAGAGTCGCACATAGTTGCGGGTGAG
1 CATAATCAGTGACAGAGTCGCACATAATTGCGGGTGAG
712783 CACGTAAGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (40 bp):
CATAATCAGTGACAGAGTCGCACATAATTGCGGGTGAGTA
Found at i:720232 original size:29 final size:31
Alignment explanation
Indices: 720199--720271 Score: 87
Period size: 29 Copynumber: 2.4 Consensus size: 31
720189 TCTGTCTCCT
* **
720199 ATTTTTCTCACTCAACTTT-CATTTTG-ATC
1 ATTTTGCTCACTCAACTTTACAAATTGAATC
* *
720228 ATTTTGATCACTAAACTTTACAAATTGAATC
1 ATTTTGCTCACTCAACTTTACAAATTGAATC
720259 ATTTTGCTCACTC
1 ATTTTGCTCACTC
720272 TATTGTTAAC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
29 16 0.46
30 5 0.14
31 14 0.40
ACGTcount: A:0.27, C:0.22, G:0.05, T:0.45
Consensus pattern (31 bp):
ATTTTGCTCACTCAACTTTACAAATTGAATC
Found at i:721800 original size:43 final size:43
Alignment explanation
Indices: 721738--721993 Score: 168
Period size: 43 Copynumber: 6.0 Consensus size: 43
721728 AAAATAAAGC
*
721738 CAAAATGGTCAATACCTATAGCGCCATTTTTGTAACAAACGCCA
1 CAAAA-GGTCAATACCTATAGCGCCATTTTTGGAACAAACGCCA
* *
721782 CAAAAGGTCAATACCTATAGCGTCATTTTTGGAACAAACGCCG
1 CAAAAGGTCAATACCTATAGCGCCATTTTTGGAACAAACGCCA
* ** * * **
721825 CAAAAGGCCAGAT--CTATAAAGGCGTTTTTGGAACAAATC-CTG
1 CAAAAGGTCA-ATACCTATAGCGCCATTTTTGGAACAAA-CGCCA
* **
721867 CAAAAGGTCAGAT--CTATAGCGTCC-TTTTTGGAATAAACGCTG
1 CAAAAGGTCA-ATACCTATAGCG-CCATTTTTGGAACAAACGCCA
* ** * * * * *
721909 CAAAAGATTGAGATCTATAGCGGCATTTTTGGAACAAACACCG
1 CAAAAGGTCAATACCTATAGCGCCATTTTTGGAACAAACGCCA
* ***
721952 TAAAAGGTCAGAT--CTATAGCGATGTTTTTGGATACAAACGCC
1 CAAAAGGTCA-ATACCTATAGCGCCATTTTTGGA-ACAAACGCC
721994 GCTAATTACC
Statistics
Matches: 172, Mismatches: 31, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.01
42 79 0.46
43 83 0.48
44 8 0.05
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (43 bp):
CAAAAGGTCAATACCTATAGCGCCATTTTTGGAACAAACGCCA
Found at i:721855 original size:42 final size:42
Alignment explanation
Indices: 721753--721995 Score: 238
Period size: 42 Copynumber: 5.7 Consensus size: 42
721743 TGGTCAATAC
* * * *
721753 CTATAGCGCCATTTTTGTAACAAACGCCACAAAAGGTCA-AT
1 CTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCAGAT
* * *
721794 ACCTATAGCGTCATTTTTGGAACAAACGCCGCAAAAGGCCAGAT
1 --CTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCAGAT
** *
721838 CTATAAAGGCGTTTTTGGAACAAATC-CTGCAAAAGGTCAGAT
1 CTATAGCGGCGTTTTTGGAACAAA-CGCCGCAAAAGGTCAGAT
* * * * * *
721880 CTATAGCGTCCTTTTTGGAATAAACGCTGCAAAAGATTGAGAT
1 CTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAG-GTCAGAT
* * *
721923 CTATAGCGGCATTTTTGGAACAAACACCGTAAAAGGTCAGAT
1 CTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCAGAT
**
721965 CTATAGCGATGTTTTTGGATACAAACGCCGC
1 CTATAGCGGCGTTTTTGGA-ACAAACGCCGC
721996 TAATTACCTT
Statistics
Matches: 165, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.01
42 83 0.50
43 79 0.48
44 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (42 bp):
CTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCAGAT
Found at i:721923 original size:85 final size:84
Alignment explanation
Indices: 721762--721995 Score: 258
Period size: 85 Copynumber: 2.8 Consensus size: 84
721752 CCTATAGCGC
* * *
721762 CATTTTTGTAACAAACGCCACAAAAGGTCA-ATACCTATAGCGTCATTTTTGGAACAAACGCCGC
1 CATTTTTGGAACAAACACCGCAAAAGGTCAGAT--CTATAGCGTCATTTTTGGAACAAACGCCGC
721826 AAAAGGCCAGATCTATAAAGG
64 AAAAGGCCAGATCTATAAAGG
* * * * *
721847 CGTTTTTGGAACAAATC-CTGCAAAAGGTCAGATCTATAGCGTCCTTTTTGGAATAAACGCTGCA
1 CATTTTTGGAACAAA-CACCGCAAAAGGTCAGATCTATAGCGTCATTTTTGGAACAAACGCCGCA
*** **
721911 AAAGATTGAGATCTATAGCGG
65 AAAG-GCCAGATCTATAAAGG
* *
721932 CATTTTTGGAACAAACACCGTAAAAGGTCAGATCTATAGCGAT-GTTTTTGGATACAAACGCCGC
1 CATTTTTGGAACAAACACCGCAAAAGGTCAGATCTATAGCG-TCATTTTTGGA-ACAAACGCCGC
721996 TAATTACCTT
Statistics
Matches: 125, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
84 33 0.26
85 79 0.63
86 13 0.10
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (84 bp):
CATTTTTGGAACAAACACCGCAAAAGGTCAGATCTATAGCGTCATTTTTGGAACAAACGCCGCAA
AAGGCCAGATCTATAAAGG
Found at i:724870 original size:30 final size:30
Alignment explanation
Indices: 724824--725061 Score: 253
Period size: 30 Copynumber: 7.9 Consensus size: 30
724814 TGTAGTTTCA
*
724824 ATCTGCATGAGATTAATTCCCCGTTCTGAC
1 ATCTGCATGGGATTAATTCCCCGTTCTGAC
* ** *
724854 ATCTCCATGGGATTAATTCCATGTTTTGAC
1 ATCTGCATGGGATTAATTCCCCGTTCTGAC
*
724884 ATCTGCATGAGATTAATTCCCCGTTCTGAC
1 ATCTGCATGGGATTAATTCCCCGTTCTGAC
* * * * *
724914 ATCTGTATGAGATTAGTTCCTCGTTTTGAC
1 ATCTGCATGGGATTAATTCCCCGTTCTGAC
* *
724944 ATCTGCATGGGATTAGTTCCCCGTTTTGAC
1 ATCTGCATGGGATTAATTCCCCGTTCTGAC
* * * *
724974 ATATGCATGGGATTAGTTCCCCATTTTGAC
1 ATCTGCATGGGATTAATTCCCCGTTCTGAC
* * * * *
725004 TTTTGCATGGGATTAGTTTCCCGTTCTAAC
1 ATCTGCATGGGATTAATTCCCCGTTCTGAC
*
725034 ATCTACATGGGA-TAAGTTCCCCGTTCTG
1 ATCTGCATGGGATTAA-TTCCCCGTTCTG
725062 TTTATCTGCA
Statistics
Matches: 176, Mismatches: 31, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
29 2 0.01
30 174 0.99
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.37
Consensus pattern (30 bp):
ATCTGCATGGGATTAATTCCCCGTTCTGAC
Found at i:729454 original size:2 final size:2
Alignment explanation
Indices: 729443--729524 Score: 155
Period size: 2 Copynumber: 41.0 Consensus size: 2
729433 ACACACACAC
*
729443 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
729485 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
729525 GCAAAATTTT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
2 78 1.00
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:730509 original size:19 final size:19
Alignment explanation
Indices: 730445--730524 Score: 81
Period size: 19 Copynumber: 4.0 Consensus size: 19
730435 TTATGTATTT
730445 TATTTTACCTTATTTAGGG
1 TATTTTACCTTATTTAGGG
* *
730464 TGTTATTATC-TACTGTCTAGTGG
1 TATT-TTACCTTA-T-T-TAG-GG
*
730487 TATTTTGCCTTATTTAGGG
1 TATTTTACCTTATTTAGGG
730506 TATTTTACCTTATTTAGGG
1 TATTTTACCTTATTTAGGG
730525 ACGAGTTAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
19 25 0.51
20 8 0.16
21 2 0.04
22 7 0.14
23 7 0.14
ACGTcount: A:0.19, C:0.11, G:0.19, T:0.51
Consensus pattern (19 bp):
TATTTTACCTTATTTAGGG
Found at i:730830 original size:42 final size:42
Alignment explanation
Indices: 730771--730922 Score: 250
Period size: 42 Copynumber: 3.6 Consensus size: 42
730761 CCCGAATTCT
*
730771 CGTGTTTGTTTCACGTAATTCGTTTTCTGGAAAATGTTTTCC
1 CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTTTCC
* *
730813 CGTGTTTGTTTTACGTAATTCGTTTTCCGGAAAATGTTTTCT
1 CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTTTCC
*
730855 CGTGTTTGTTTCACGTAATTCATTTTCCGGAAAATGTTTTCC
1 CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTTTCC
* *
730897 AGTGTTTGTTTCACGTAATTGGTTTT
1 CGTGTTTGTTTCACGTAATTCGTTTT
730923 TCTGAACGTA
Statistics
Matches: 101, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 101 1.00
ACGTcount: A:0.17, C:0.15, G:0.19, T:0.49
Consensus pattern (42 bp):
CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTTTCC
Found at i:731146 original size:31 final size:32
Alignment explanation
Indices: 731111--731181 Score: 96
Period size: 31 Copynumber: 2.3 Consensus size: 32
731101 AAATATTATT
731111 TATTA-ATTTATTAATATT-TATAATAAT-ATAA
1 TATTATATTT-TTAATATTATATAA-AATAATAA
731142 TATTATATTTTTAATATTATATAAAATAATAA
1 TATTATATTTTTAATATTATATAAAATAATAA
731174 -ATTATATT
1 TATTATATT
731182 ATAATATAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
31 24 0.65
32 13 0.35
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (32 bp):
TATTATATTTTTAATATTATATAAAATAATAA
Found at i:731149 original size:22 final size:23
Alignment explanation
Indices: 731119--731162 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
731109 TTTATTAATT
731119 TATTAATATTTATAATAATATAA
1 TATTAATATTTATAATAATATAA
* *
731142 TATT-ATATTTTTAATATTATA
1 TATTAATATTTATAATAATATA
731163 TAAAATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TATTAATATTTATAATAATATAA
Found at i:731190 original size:20 final size:20
Alignment explanation
Indices: 731161--731201 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
731151 TTTAATATTA
*
731161 TATAAAATAATAAATTATAT
1 TATAAAATAAGAAATTATAT
* *
731181 TATAATATAAGATATTATAT
1 TATAAAATAAGAAATTATAT
731201 T
1 T
731202 TTTATTTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
TATAAAATAAGAAATTATAT
Found at i:731277 original size:23 final size:23
Alignment explanation
Indices: 731251--731295 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
731241 AATAATATTT
731251 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
731274 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
731296 ATATGACACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:731430 original size:18 final size:20
Alignment explanation
Indices: 731356--731422 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 20
731346 AAATATACAA
*
731356 AAATTAATATTTTTAATTAATT
1 AAATAAATATTTTTAA-TAA-T
*
731378 ATAA-AAATACTATTTAATAAT
1 A-AATAAATA-TTTTTAATAAT
731399 AAATAAATTATTTTTAATAAT
1 AAATAAA-TATTTTTAATAAT
731420 AAA
1 AAA
731423 AAAGTTTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
20 2 0.05
21 18 0.47
22 10 0.26
23 8 0.21
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATAAATATTTTTAATAAT
Found at i:731637 original size:14 final size:15
Alignment explanation
Indices: 731616--731667 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
731606 TTCTAGAAAT
731616 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
**
731631 G-AATTCAAATTCCA
1 GTAATTCATTTTCCA
*
731645 GTAATTCATTTTTCA
1 GTAATTCATTTTCCA
731660 GTAATTCA
1 GTAATTCA
731668 AATTCCAGCC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 12 0.39
15 19 0.61
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (15 bp):
GTAATTCATTTTCCA
Found at i:731652 original size:15 final size:15
Alignment explanation
Indices: 731616--731675 Score: 68
Period size: 15 Copynumber: 4.1 Consensus size: 15
731606 TTCTAGAAAT
**
731616 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
731631 G-AATTCAAATTCCA
1 GTAATTCAAATTCCA
** *
731645 GTAATTCATTTTTCA
1 GTAATTCAAATTCCA
731660 GTAATTCAAATTCCA
1 GTAATTCAAATTCCA
731675 G
1 G
731676 CCAGTAATTC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
14 12 0.33
15 24 0.67
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.40
Consensus pattern (15 bp):
GTAATTCAAATTCCA
Found at i:731692 original size:34 final size:29
Alignment explanation
Indices: 731616--731675 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 29
731606 TTCTAGAAAT
*
731616 GTAATTCATTTTCCAGAATTCAAATTCCA
1 GTAATTCATTTTTCAGAATTCAAATTCCA
731645 GTAATTCATTTTTCAGTAATTCAAATTCCA
1 GTAATTCATTTTTCAG-AATTCAAATTCCA
731675 G
1 G
731676 CCAGTAATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 15 0.52
30 14 0.48
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.40
Consensus pattern (29 bp):
GTAATTCATTTTTCAGAATTCAAATTCCA
Found at i:743619 original size:31 final size:31
Alignment explanation
Indices: 743584--743645 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
743574 AATAAAAGTG
*
743584 GTATAAATATAAAAGATAGGTGACTATTCTC
1 GTATAAATATAAAAGATAGGTGACAATTCTC
743615 GTATAAATATAAAAGATAGGTGACAATTCTC
1 GTATAAATATAAAAGATAGGTGACAATTCTC
743646 CTAGCTTACC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.44, C:0.10, G:0.16, T:0.31
Consensus pattern (31 bp):
GTATAAATATAAAAGATAGGTGACAATTCTC
Found at i:749335 original size:5 final size:5
Alignment explanation
Indices: 749325--749461 Score: 238
Period size: 5 Copynumber: 27.4 Consensus size: 5
749315 TTAATCGATG
* * *
749325 ATAAT ATAAT ATAAT ATAAT ATAAT GTAAT ATAAT GTAAT ATAAT GTAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
*
749375 GTAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
749425 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT
749462 TTATTTAGTT
Statistics
Matches: 126, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 126 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:755931 original size:21 final size:21
Alignment explanation
Indices: 755907--755948 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
755897 AAAAAATTAC
* *
755907 ATATTTCATTAAATTATAAAA
1 ATATTTCAGTAAATAATAAAA
*
755928 ATATTTTAGTAAATAATAAAA
1 ATATTTCAGTAAATAATAAAA
755949 TAATGATATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
ATATTTCAGTAAATAATAAAA
Found at i:761236 original size:62 final size:60
Alignment explanation
Indices: 761067--761243 Score: 175
Period size: 60 Copynumber: 2.9 Consensus size: 60
761057 CGTATAATTT
* * * *
761067 AGGAT-AAAATTGAAATATTCAAAAAGTTTAGGGACCAATTTAGAATGAATA-TCACAGTTTG
1 AGGATGAAAA-TGAAAGATTC-AAAAGTTTAGGGAACAATTTAGAATG-ATAGTCATAGTTTA
*
761128 AGGATGAAAATGAAAGATTCAAAAGTTT-GAGAACTAATTTAGAATGATAGTCATAGTTTA
1 AGGATGAAAATGAAAGATTCAAAAGTTTAGGGAAC-AATTTAGAATGATAGTCATAGTTTA
* * *
761188 AGGATGAAAAATGAAA-ATGTTTAAAAGTTTAGGGATCAATTT-GAAATGATGGTCAT
1 AGGATG-AAAATGAAAGA--TTCAAAAGTTTAGGGAACAATTTAG-AATGATAGTCAT
761244 TGATTGGGGA
Statistics
Matches: 99, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
59 7 0.07
60 34 0.34
61 24 0.24
62 30 0.30
63 4 0.04
ACGTcount: A:0.44, C:0.06, G:0.20, T:0.30
Consensus pattern (60 bp):
AGGATGAAAATGAAAGATTCAAAAGTTTAGGGAACAATTTAGAATGATAGTCATAGTTTA
Found at i:761415 original size:31 final size:30
Alignment explanation
Indices: 761353--761415 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
761343 TAATTAGTTT
* * *
761353 TATCCACCTTTTACTTTTTGGTGCATTAAG
1 TATCCAACTTTTACTTTTTGCTACATTAAG
*
761383 TATCCAACTTTTAGTTTTTGCTACAATTAAG
1 TATCCAACTTTTACTTTTTGCTAC-ATTAAG
761414 TA
1 TA
761416 GTTAACTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 20 0.71
31 8 0.29
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.46
Consensus pattern (30 bp):
TATCCAACTTTTACTTTTTGCTACATTAAG
Found at i:761644 original size:31 final size:30
Alignment explanation
Indices: 761608--761699 Score: 98
Period size: 30 Copynumber: 3.1 Consensus size: 30
761598 ATAATTGAAC
761608 AAAAAAA-TAGGTACCTAGATGCACCATTA
1 AAAAAAATTAGGTACCTAGATGCACCATTA
* * *
761637 AAGAAAAATTAAGTACCTAAATGCATCATTA
1 AA-AAAAATTAGGTACCTAGATGCACCATTA
* * * *
761668 AAAAGAGTTAGATACCTAGATGCAACA-TA
1 AAAAAAATTAGGTACCTAGATGCACCATTA
761697 AAA
1 AAA
761700 TGATTAAGTA
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
29 7 0.13
30 24 0.46
31 21 0.40
ACGTcount: A:0.51, C:0.14, G:0.13, T:0.22
Consensus pattern (30 bp):
AAAAAAATTAGGTACCTAGATGCACCATTA
Found at i:768809 original size:21 final size:21
Alignment explanation
Indices: 768784--768824 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
768774 TTTATTATAT
*
768784 AAAAATAATATTAATAAATTCG
1 AAAAA-AATATCAATAAATTCG
*
768806 AAAAAAATATCAGTAAATT
1 AAAAAAATATCAATAAATT
768825 GTTTGAAACT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (21 bp):
AAAAAAATATCAATAAATTCG
Found at i:770632 original size:31 final size:31
Alignment explanation
Indices: 770564--770717 Score: 242
Period size: 31 Copynumber: 5.0 Consensus size: 31
770554 TCCCGAAGAC
* *
770564 CAGTCCATA-GATTCCGAAGAACCTA-GTAAT
1 CAGTCCATATG-TTCCGAAGAACATAGGTAAA
* *
770594 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
770625 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
770656 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
770687 CAGTCCATATG-TCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
770717 C
1 C
770718 CCTCGACCCT
Statistics
Matches: 116, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
30 40 0.34
31 76 0.66
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAAA
Found at i:770920 original size:23 final size:24
Alignment explanation
Indices: 770894--770940 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
770884 ATATACTTGT
*
770894 TTTCACATATATA-TTTCATATCA
1 TTTCACATATACACTTTCATATCA
770917 TTTCACATATACACTTTCATATCA
1 TTTCACATATACACTTTCATATCA
770941 CAGGCCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTCACATATACACTTTCATATCA
Found at i:771547 original size:21 final size:21
Alignment explanation
Indices: 771517--771561 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
771507 ATTCTGTCGT
* *
771517 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
771538 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
771559 TTG
1 TTG
771562 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:774394 original size:31 final size:31
Alignment explanation
Indices: 774356--774509 Score: 256
Period size: 31 Copynumber: 5.0 Consensus size: 31
774346 CCCGAAAGAC
* *
774356 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TTCCGAAGAACATAGGTAAA
* *
774387 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
774418 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
774449 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
774480 CAGTCCATATGTTCCGAAGAACATAGGTAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAA
774510 CCCTCGACCC
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
31 115 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (31 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAAA
Found at i:774714 original size:23 final size:24
Alignment explanation
Indices: 774688--774734 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
774678 ATATACTTGT
*
774688 TTTCACATATATA-TTTCATATCA
1 TTTCACATATACACTTTCATATCA
774711 TTTCACATATACACTTTCATATCA
1 TTTCACATATACACTTTCATATCA
774735 CAGGCCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTCACATATACACTTTCATATCA
Found at i:775344 original size:21 final size:21
Alignment explanation
Indices: 775314--775358 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
775304 ATTCTGTCGT
* *
775314 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
775335 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
775356 TTG
1 TTG
775359 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:776636 original size:19 final size:20
Alignment explanation
Indices: 776598--776636 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
776588 ATTTGATAAT
* *
776598 TTTAAAAAATTTATTTAAAA
1 TTTAAAAAATATATTAAAAA
776618 TTTAAAAAA-ATATTAAAAA
1 TTTAAAAAATATATTAAAAA
776637 ATACATAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TTTAAAAAATATATTAAAAA
Found at i:778721 original size:39 final size:35
Alignment explanation
Indices: 778642--778732 Score: 105
Period size: 39 Copynumber: 2.5 Consensus size: 35
778632 AGTCATATAT
778642 TCGGGTCGGGTCGGGTCGGGTGAAACCTTAATTTCG
1 TCGGGTCGGGTCGGGTCGGGTGAAACCTT-ATTTCG
778678 TCGGGTCGGGTCGGGTCACGGGTGAAAACCCCTT-TCTTC-
1 TCGGGTCGGGTCGGGT--CGGGTG-AAA--CCTTAT-TTCG
778717 TCGGGTCGGGTCGGGT
1 TCGGGTCGGGTCGGGT
778733 GACCCAAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
36 16 0.33
38 6 0.12
39 20 0.41
40 3 0.06
41 4 0.08
ACGTcount: A:0.11, C:0.23, G:0.40, T:0.26
Consensus pattern (35 bp):
TCGGGTCGGGTCGGGTCGGGTGAAACCTTATTTCG
Found at i:779560 original size:20 final size:20
Alignment explanation
Indices: 779532--779572 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
779522 TACTTATCTT
* *
779532 ATTTGTAATAAAAATATTAG
1 ATTTATAATAAAAATAATAG
779552 ATTTATAATAAAAATAATAG
1 ATTTATAATAAAAATAATAG
779572 A
1 A
779573 AAACAACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (20 bp):
ATTTATAATAAAAATAATAG
Found at i:785871 original size:24 final size:25
Alignment explanation
Indices: 785817--785873 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
785807 TAAATAAATT
*
785817 TTAACATAAAAATATATTTTAATAAG
1 TTAATATAAAAATATATTTT-ATAAG
785843 TTAATATAACAAATAT-TTTT-TAAG
1 TTAATATAA-AAATATATTTTATAAG
785867 TTAATAT
1 TTAATAT
785874 TTATAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 11 0.38
26 12 0.41
27 6 0.21
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (25 bp):
TTAATATAAAAATATATTTTATAAG
Found at i:786688 original size:36 final size:36
Alignment explanation
Indices: 786641--786738 Score: 169
Period size: 36 Copynumber: 2.7 Consensus size: 36
786631 CAACTAGAGT
*
786641 TTCATCTGTAATGCTCGTATCATTGGTGTCAGCAGC
1 TTCATCTGTAATGCTCGCATCATTGGTGTCAGCAGC
*
786677 TTCATCTGTAATGCTCGCATCATTGGTTTCAGCAGC
1 TTCATCTGTAATGCTCGCATCATTGGTGTCAGCAGC
*
786713 TTCATCTGTAACGCTCGCATCATTGG
1 TTCATCTGTAATGCTCGCATCATTGG
786739 CTGCTGTGGC
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 59 1.00
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (36 bp):
TTCATCTGTAATGCTCGCATCATTGGTGTCAGCAGC
Found at i:788428 original size:17 final size:18
Alignment explanation
Indices: 788406--788439 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
788396 CCCTCAAGCT
*
788406 TTGCATTTCGA-TTCGAA
1 TTGCATCTCGAGTTCGAA
788423 TTGCATCTCGAGTTCGA
1 TTGCATCTCGAGTTCGA
788440 GTCTTGTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (18 bp):
TTGCATCTCGAGTTCGAA
Found at i:789661 original size:36 final size:36
Alignment explanation
Indices: 789620--789698 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
789610 ATGATAACAC
* *
789620 CACCTCCTCCCCT-TCCGCCGCCACATGAAACACCGT
1 CACCTCCT-CCATGTCCGCCACCACATGAAACACCGT
* * *
789656 CACCTCATCCATGTCCGCCACCGCATGCAACACCGT
1 CACCTCCTCCATGTCCGCCACCACATGAAACACCGT
789692 CACCTCC
1 CACCTCC
789699 GTCATATTTG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
35 3 0.08
36 33 0.92
ACGTcount: A:0.20, C:0.52, G:0.11, T:0.16
Consensus pattern (36 bp):
CACCTCCTCCATGTCCGCCACCACATGAAACACCGT
Found at i:790388 original size:31 final size:31
Alignment explanation
Indices: 790307--790388 Score: 78
Period size: 31 Copynumber: 2.7 Consensus size: 31
790297 TAAAATAGTC
* **
790307 CTCT-AACTATAGAATATTGTTTTATTAAGT
1 CTCTCAACTATAGAAAATTACTTTATTAAGT
* * * *
790337 CTTTCGATTATAGAATATTACTTTATTAAGT
1 CTCTCAACTATAGAAAATTACTTTATTAAGT
790368 CTCTCAACTATTA-AAAATTAC
1 CTCTCAACTA-TAGAAAATTAC
790389 AAAATGATCA
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
30 3 0.07
31 36 0.88
32 2 0.05
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.44
Consensus pattern (31 bp):
CTCTCAACTATAGAAAATTACTTTATTAAGT
Found at i:798494 original size:15 final size:17
Alignment explanation
Indices: 798476--798507 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
798466 ATAAAAGAAG
798476 AATTATA-AA-AAAATA
1 AATTATATAAGAAAATA
798491 AATTATATAAGAAAATA
1 AATTATATAAGAAAATA
798508 CAGAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 2 0.13
17 6 0.40
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (17 bp):
AATTATATAAGAAAATA
Found at i:799778 original size:21 final size:23
Alignment explanation
Indices: 799743--799790 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
799733 GGTCACTAGT
799743 ATAATTTACCCTTT-AATTTTAA
1 ATAATTTACCCTTTAAATTTTAA
*
799765 ATAATTTA-CCTTTAAATTTTTA
1 ATAATTTACCCTTTAAATTTTAA
799787 ATAA
1 ATAA
799791 CACATAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (23 bp):
ATAATTTACCCTTTAAATTTTAA
Found at i:804854 original size:21 final size:22
Alignment explanation
Indices: 804821--804861 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
804811 TATAGACTCG
804821 ATTATATTAGATATAATATAAA
1 ATTATATTAGATATAATATAAA
804843 ATTATATT-GATATAATATA
1 ATTATATTAGATATAATATA
804862 TATATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (22 bp):
ATTATATTAGATATAATATAAA
Found at i:804879 original size:21 final size:21
Alignment explanation
Indices: 804821--804879 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
804811 TATAGACTCG
*
804821 ATTATATTAGATATAATATAAA
1 ATTATATTATAT-TAATATAAA
*
804843 ATTATATTGATA-TAATAT-AT
1 ATTATATT-ATATTAATATAAA
804863 ATATATATTATATTAAT
1 AT-TATATTATATTAAT
804880 TGTATTAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 8 0.25
23 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.47
Consensus pattern (21 bp):
ATTATATTATATTAATATAAA
Found at i:805544 original size:59 final size:59
Alignment explanation
Indices: 805436--805588 Score: 218
Period size: 58 Copynumber: 2.6 Consensus size: 59
805426 TCAAGTGACT
* * * * * *
805436 ATTTTGTAACTTTTAATAGTTGAGGAACTCAATAAAGCAACACCTAATAGTCAGGGAATC
1 ATTTTGTAACTTTTAATAGTCG-GAAACTCAACAAAACAACACCTAATAGTCAAGAAATC
*
805496 ATTTTGTAACTTTTAATAGTCGGAAACTCAACAAAACAACACCTAATAGTCAATAAATC
1 ATTTTGTAACTTTTAATAGTCGGAAACTCAACAAAACAACACCTAATAGTCAAGAAATC
*
805555 A-TTTGTAACTTTTAATAGTCGGAGACTCAACAAA
1 ATTTTGTAACTTTTAATAGTCGGAAACTCAACAAA
805589 TTAGTAACAT
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
58 32 0.38
59 32 0.38
60 21 0.25
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (59 bp):
ATTTTGTAACTTTTAATAGTCGGAAACTCAACAAAACAACACCTAATAGTCAAGAAATC
Found at i:807287 original size:483 final size:485
Alignment explanation
Indices: 806346--807296 Score: 1702
Period size: 483 Copynumber: 2.0 Consensus size: 485
806336 GGCTGCAGGA
* *
806346 GGTGTTCTGCGCAACTCTGAGGGAGAATGGATTTTTTGTTTCACGCGTAGCCTAGGAAGGTGTTC
1 GGTGTTCTACGCAACTCTGAGGGAGAATGGATTTTTGGTTTCACGCGTAGCCTAGGAAGGTGTTC
*
806411 GATTCTTACCGCTGAGTTGTGGGGTGTTCATGATCTCTTGTTGCATGCTTGGAGGTTAGGAATCA
66 GATTCTTACCGCTGAGTTGTGGGGTGTTCATGATCTCTTGTTGCATGCTTGGAGGCTAGGAATCA
*
806476 AAAAATTGAACTGGAAACCGATAATCTAGAGGTTATGAATCTGCACTTTTTCTTCGGCTGCGCTT
131 AAAAATTGAACTGGAAACCGATAATCTAGAGGTTATGAATCTGCACTTTTTCTTCGACTGCGCTT
806541 GTGGGGAGTGCTTGGTTACTAAAATCCATGAGCTGCTCGAACTTGAGTGGATCATAAAGGTATCA
196 GTGGGGAGTGCTTGGTTACTAAAATCCATGAGCTGCTCGAACTTGAGTGGATCATAAAGGTATCA
806606 CATGTATTTAGGGAGCAAATATGGTTGCGGATAGGCTGGCTGCTTTGAGTTGAGGAGCCCCCATT
261 CATGTATTTAGGGAGCAAATATGGTTGCGGATAGGCTGGCTGCTTTGAGTTGAGGAGCCCCCATT
* *
806671 GCTGCTATTGCTTTCTTAGAGCCACCTTCAGAGTTATCTTCCACGCTGCTGCGAGATCTTCAAAC
326 ACTGCTACTGCTTTCTTAGAGCCACCTTCAGAGTTATCTTCCACGCTGCTGCGAGATCTTCAAAC
806736 CTCCAGCTAATTCTTGTCTTATTGTTATATCAAAAAAAATGGATAAAGAGAAATGTTAACTTTAA
391 CTCCAGCTAATTCTTGTCTTATTGTTATATCAAAAAAAATGGATAAAGAGAAATGTTAACTTTAA
806801 TGAACGATATATTATTACCGCTGAGTTGTG
456 TGAACGATATATTATTACCGCTGAGTTGTG
806831 GGTGTTCTACGCAACTCTGA-GG-G-ATGGA-TTTTGGTTTCACGCGTAGCCTAGGAAGGTGTTC
1 GGTGTTCTACGCAACTCTGAGGGAGAATGGATTTTTGGTTTCACGCGTAGCCTAGGAAGGTGTTC
806892 GATTCTTACCGCTGAGTTGT-GGGTGTTCATGATCTCTTGTTGCATGCTTGGAGGCTAGGAATTC
66 GATTCTTACCGCTGAGTTGTGGGGTGTTCATGATCTCTTGTTGCATGCTTGGAGGCTAGGAA-TC
*
806956 GAAAAATTGAACTGGAAACCGATAATCTAGAGGTTATGAAGATCTGCACTTTTTCTTCGACTGCG
130 AAAAAATTGAACTGGAAACCGATAATCTAGAGGTTATG-A-ATCTGCACTTTTTCTTCGACTGCG
807021 CTTGTGGGGAGTGCTTTGGTTACTAAAATCCATGAGCTGCTCGAACTTGAGTGGATCATAAA-GT
193 CTTGTGGGGAGTGC-TTGGTTACTAAAATCCATGAGCTGCTCGAACTTGAGTGGATCATAAAGGT
*
807085 ATCACATGTATTTAGGGAGCAAATATGGTTGCGGATAGGCTGGCTGTTTTGAGTTGAGGAGCCCC
257 ATCACATGTATTTAGGGAGCAAATATGGTTGCGGATAGGCTGGCTGCTTTGAGTTGAGGAGCCCC
* *
807150 CATTACTGCTACTGTTTTCTTAGAGCCACCTTCGGAGTTATCTTCCACGCTGCTGCGAGATCTTC
322 CATTACTGCTACTGCTTTCTTAGAGCCACCTTCAGAGTTATCTTCCACGCTGCTGCGAGATCTTC
807215 AAACCTCCAGCTAATTCTTGTCTTATTGTTATATCAAAAAAAA-GGATAAAGAGAAAAAT-TTAA
387 AAACCTCCAGCTAATTCTTGTCTTATTGTTATATCAAAAAAAATGGATAAAGAG--AAATGTTAA
807278 CTTTAATGAACGATATATT
450 CTTTAATGAACGATATATT
807297 TTATTATTAT
Statistics
Matches: 450, Mismatches: 10, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
480 40 0.09
481 91 0.20
482 16 0.04
483 231 0.51
484 53 0.12
485 19 0.04
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (485 bp):
GGTGTTCTACGCAACTCTGAGGGAGAATGGATTTTTGGTTTCACGCGTAGCCTAGGAAGGTGTTC
GATTCTTACCGCTGAGTTGTGGGGTGTTCATGATCTCTTGTTGCATGCTTGGAGGCTAGGAATCA
AAAAATTGAACTGGAAACCGATAATCTAGAGGTTATGAATCTGCACTTTTTCTTCGACTGCGCTT
GTGGGGAGTGCTTGGTTACTAAAATCCATGAGCTGCTCGAACTTGAGTGGATCATAAAGGTATCA
CATGTATTTAGGGAGCAAATATGGTTGCGGATAGGCTGGCTGCTTTGAGTTGAGGAGCCCCCATT
ACTGCTACTGCTTTCTTAGAGCCACCTTCAGAGTTATCTTCCACGCTGCTGCGAGATCTTCAAAC
CTCCAGCTAATTCTTGTCTTATTGTTATATCAAAAAAAATGGATAAAGAGAAATGTTAACTTTAA
TGAACGATATATTATTACCGCTGAGTTGTG
Found at i:808278 original size:59 final size:60
Alignment explanation
Indices: 808168--808284 Score: 200
Period size: 59 Copynumber: 2.0 Consensus size: 60
808158 TGCACATTAT
* *
808168 GTCTAGAAACTGTTGCTTGCTCGTACTTTTGTGTACCTAAAATTACTAAAAACCTGCTAA
1 GTCTAGAAACTGTTGCTTGCTCATACTTTTGTGTACCTAAAATTACAAAAAACCTGCTAA
*
808228 GTCTAGAAACTGTTGCTTGCTCATGC-TTTGTGTACCTAAAATTACAAAAAACCTGCT
1 GTCTAGAAACTGTTGCTTGCTCATACTTTTGTGTACCTAAAATTACAAAAAACCTGCT
808285 GTCAGTTTCA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
59 30 0.56
60 24 0.44
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (60 bp):
GTCTAGAAACTGTTGCTTGCTCATACTTTTGTGTACCTAAAATTACAAAAAACCTGCTAA
Found at i:810015 original size:50 final size:50
Alignment explanation
Indices: 809956--810059 Score: 208
Period size: 50 Copynumber: 2.1 Consensus size: 50
809946 TTGCAGTCAA
809956 TAAAGCTATTCAGTTCCAGCAATATCCGACTGACATGCACTGGTTGGCTG
1 TAAAGCTATTCAGTTCCAGCAATATCCGACTGACATGCACTGGTTGGCTG
810006 TAAAGCTATTCAGTTCCAGCAATATCCGACTGACATGCACTGGTTGGCTG
1 TAAAGCTATTCAGTTCCAGCAATATCCGACTGACATGCACTGGTTGGCTG
810056 TAAA
1 TAAA
810060 ACGAATTCTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (50 bp):
TAAAGCTATTCAGTTCCAGCAATATCCGACTGACATGCACTGGTTGGCTG
Found at i:812506 original size:19 final size:20
Alignment explanation
Indices: 812474--812512 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
812464 ACTTTCAATT
* *
812474 TTTTTAAACTTAATATTAAA
1 TTTTTAAACATAATACTAAA
812494 TTTTT-AACATAATACTAAA
1 TTTTTAAACATAATACTAAA
812513 ACGTAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTTTAAACATAATACTAAA
Found at i:812803 original size:31 final size:31
Alignment explanation
Indices: 812744--812804 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
812734 TTGATCAATG
* **
812744 ATATTATCGATTTGTAACAAAATTATCACTA
1 ATATTATCGATATGTAACAAAACGATCACTA
812775 ATATTATCGATATGTAACAAAACGATCACT
1 ATATTATCGATATGTAACAAAACGATCACT
812805 TCACCATCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (31 bp):
ATATTATCGATATGTAACAAAACGATCACTA
Found at i:814477 original size:32 final size:33
Alignment explanation
Indices: 814427--814488 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 33
814417 TTTATAAGTT
* * * *
814427 ATTTAATCGAACTGTTAAAATTAAATGGTTTTG
1 ATTTAATCAAACTATTAAAAATAAAAGGTTTTG
814460 ATTT-ATCAAACTATTAAAAATAAAAGGTT
1 ATTTAATCAAACTATTAAAAATAAAAGGTT
814489 AATGGTTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 21 0.84
33 4 0.16
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (33 bp):
ATTTAATCAAACTATTAAAAATAAAAGGTTTTG
Found at i:814693 original size:2 final size:2
Alignment explanation
Indices: 814677--814741 Score: 114
Period size: 2 Copynumber: 33.0 Consensus size: 2
814667 TTTCTTGGTT
*
814677 TA TA TA TT TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
814718 TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA
814742 ACAATATACC
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.02
2 59 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:818739 original size:25 final size:25
Alignment explanation
Indices: 818645--818760 Score: 93
Period size: 25 Copynumber: 4.8 Consensus size: 25
818635 TTATTTTATG
*
818645 TATTTAATATTAATATAATATT-TTA
1 TATTT-ATAATAATATAATATTATTA
* *
818670 TTATTT-TAATCA-A-AATATTAAT-
1 -TATTTATAATAATATAATATTATTA
* *
818692 TA-TTATAAT-ATTTAAAATATATTA
1 TATTTATAATAATATAATAT-TATTA
818716 TATTTATAATAATATAATATTATTA
1 TATTTATAATAATATAATATTATTA
* *
818741 TATTTTTAATATTATAATAT
1 TATTTATAATAATATAATAT
818761 ACTGAACCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 17
0.73 0.10 0.17
Matches are distributed among these distances:
20 3 0.04
21 6 0.08
22 10 0.14
23 5 0.07
24 6 0.08
25 30 0.42
26 12 0.17
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (25 bp):
TATTTATAATAATATAATATTATTA
Found at i:818743 original size:8 final size:8
Alignment explanation
Indices: 818683--818760 Score: 61
Period size: 8 Copynumber: 9.6 Consensus size: 8
818673 TTTTAATCAA
818683 AATATTA-
1 AATATTAT
*
818690 ATTATTAT
1 AATATTAT
818698 AATATT-T
1 AATATTAT
*
818705 AAAATATAT
1 AATAT-TAT
*
818714 TATATTTAT
1 AATA-TTAT
*
818723 AATAATAT
1 AATATTAT
818731 AATATTAT
1 AATATTAT
* *
818739 TATATTTTT
1 AATA-TTAT
818748 AATATTAT
1 AATATTAT
818756 AATAT
1 AATAT
818761 ACTGAACCCT
Statistics
Matches: 54, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
7 11 0.20
8 27 0.50
9 15 0.28
10 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (8 bp):
AATATTAT
Found at i:819382 original size:12 final size:12
Alignment explanation
Indices: 819365--819404 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
819355 ACTTGACCAT
819365 TAAAAATATATA
1 TAAAAATATATA
*
819377 TAAAAATGTATA
1 TAAAAATATATA
819389 TAAATAATTATATA
1 TAAA-AA-TATATA
819403 TA
1 TA
819405 GTGAGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 15 0.62
13 2 0.08
14 7 0.29
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (12 bp):
TAAAAATATATA
Found at i:819471 original size:19 final size:19
Alignment explanation
Indices: 819447--819487 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
819437 CATAGCATAA
*
819447 TAAATAATTAAATTAAATT
1 TAAATAAATAAATTAAATT
* *
819466 TAAATAAATATATTTAATT
1 TAAATAAATAAATTAAATT
819485 TAA
1 TAA
819488 CTCTATTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TAAATAAATAAATTAAATT
Found at i:819845 original size:13 final size:13
Alignment explanation
Indices: 819817--819850 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
819807 ATTTTTTATT
819817 TTAAAATAAAAGA
1 TTAAAATAAAAGA
819830 TTAAACATAAAA-A
1 TTAAA-ATAAAAGA
819843 TTAAAATA
1 TTAAAATA
819851 CTTTAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 3 0.15
13 11 0.55
14 6 0.30
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (13 bp):
TTAAAATAAAAGA
Found at i:825784 original size:19 final size:19
Alignment explanation
Indices: 825759--825805 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
825749 TAAATCTAAA
825759 ATAATTTAAGAATAAATTT
1 ATAATTTAAGAATAAATTT
* *
825778 GTAATTTAAGGATAAATTT
1 ATAATTTAAGAATAAATTT
825797 ATAATTTAA
1 ATAATTTAA
825806 TTTTTGTAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (19 bp):
ATAATTTAAGAATAAATTT
Found at i:827725 original size:24 final size:24
Alignment explanation
Indices: 827697--827743 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
827687 TTTTTATATA
*
827697 TAATAATATTATATATTTAATTAT
1 TAATAATATTATATATTAAATTAT
*
827721 TAATAATTTTATATATTAAATTA
1 TAATAATATTATATATTAAATTA
827744 AACTAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
TAATAATATTATATATTAAATTAT
Found at i:829621 original size:7 final size:7
Alignment explanation
Indices: 829611--829637 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
829601 GATTTAGTGG
829611 TTAGGGT
1 TTAGGGT
829618 TTAGGGT
1 TTAGGGT
829625 TTAGGGT
1 TTAGGGT
829632 TTAGGG
1 TTAGGG
829638 ATTATAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.44, T:0.41
Consensus pattern (7 bp):
TTAGGGT
Found at i:834285 original size:21 final size:20
Alignment explanation
Indices: 834199--834356 Score: 77
Period size: 21 Copynumber: 7.8 Consensus size: 20
834189 AAATGACCAA
**
834199 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
834218 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
834238 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
834258 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * * *
834279 GAAAATCGCGATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
834300 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
834320 CAATAATCGCAACGCGAATAT
1 CAA-AATCGCAACGCGATTTT
*
834341 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
834357 ACACATAAAT
Statistics
Matches: 102, Mismatches: 31, Indels: 11
0.71 0.22 0.08
Matches are distributed among these distances:
19 16 0.16
20 42 0.41
21 44 0.43
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.20
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:834349 original size:20 final size:20
Alignment explanation
Indices: 834324--834517 Score: 76
Period size: 20 Copynumber: 9.7 Consensus size: 20
834314 GATTTTCAAT
* *
834324 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
834344 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACATA
* *
834364 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
834384 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* ****
834404 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGAACACATA
* * *
834424 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
834444 TATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
834464 AATCGCAACGATAATACATAA
1 AATCGCAACGCGAACACAT-A
* *
834485 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
834505 AATCGCAACGCGA
1 AATCGCAACGCGA
834518 TATTTAAAGC
Statistics
Matches: 139, Mismatches: 28, Indels: 15
0.76 0.15 0.08
Matches are distributed among these distances:
19 3 0.02
20 120 0.86
21 15 0.11
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Done.