Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005397.1 Hibiscus syriacus cultivar Beakdansim tig00012370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1218879
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 5
Found at i:1017525 original size:29 final size:28
Alignment explanation
Indices: 1017477--1017551 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 28
1017467 AAGTACATTA
* *
1017477 TTTAAAATAAAATATTAATTATATTATT
1 TTTAAAATAAATTATAAATTATATTATT
* *
1017505 TTTAAAGATAAATTATAAATTTTCTTATT
1 TTTAAA-ATAAATTATAAATTATATTATT
*
1017534 GTTAAAA-AATATTATAAA
1 TTTAAAATAA-ATTATAAA
1017552 AATAATAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
27 2 0.05
28 15 0.38
29 23 0.57
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (28 bp):
TTTAAAATAAATTATAAATTATATTATT
Found at i:1026001 original size:60 final size:60
Alignment explanation
Indices: 1025878--1026001 Score: 153
Period size: 60 Copynumber: 2.1 Consensus size: 60
1025868 TAAAATACAC
* * *
1025878 AAATAATCCTTTGATTATAGGATATTACTTTATTAAGTCTCTCAGCTATTAAAAATTACA
1 AAATAATCCTTTGACTATAGAATATTACTTTATTAAGTCTCTCAGCTATTAAAAATTAAA
* * * *
1025938 AAATAGTCCTTTGACTATAGAATATTACTTTTTTAAGTC-CATC-GACTATTAGAAGTTAAA
1 AAATAATCCTTTGACTATAGAATATTACTTTATTAAGTCTC-TCAG-CTATTAAAAATTAAA
1025998 AAAT
1 AAAT
1026002 GATCACCCAA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
59 2 0.04
60 53 0.96
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.39
Consensus pattern (60 bp):
AAATAATCCTTTGACTATAGAATATTACTTTATTAAGTCTCTCAGCTATTAAAAATTAAA
Found at i:1026449 original size:21 final size:21
Alignment explanation
Indices: 1026423--1026475 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
1026413 ATTCTGACTA
1026423 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* *
1026444 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
1026465 TCGCAATGCGA
1 TCGCATTGCGA
1026476 ATACGTAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:1026511 original size:42 final size:41
Alignment explanation
Indices: 1026465--1026580 Score: 137
Period size: 41 Copynumber: 2.8 Consensus size: 41
1026455 TTTTCCTAAT
*
1026465 TCGCAATGCGAATACGTAAATCGCAACGCGGAATTT-GGAAAA
1 TCGCAATGCGAATACGTAAATCGCAACGC-G-ATTTACGAAAA
* * * *
1026507 TCGCAATGCGATTACGTAAATCTCAATGCGATTTACGTAAA
1 TCGCAATGCGAATACGTAAATCGCAACGCGATTTACGAAAA
*
1026548 TCGCAATGCGAAT-CTGTAAATCGCAACGAGATT
1 TCGCAATGCGAATAC-GTAAATCGCAACGCGATT
1026581 CTGACTATCG
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
40 5 0.08
41 32 0.51
42 26 0.41
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (41 bp):
TCGCAATGCGAATACGTAAATCGCAACGCGATTTACGAAAA
Found at i:1026544 original size:21 final size:20
Alignment explanation
Indices: 1026465--1026573 Score: 112
Period size: 20 Copynumber: 5.3 Consensus size: 20
1026455 TTTTCCTAAT
*
1026465 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGATTACGTAAA
* ** *
1026485 TCGCAACGCGGAATTTGGAAAA
1 TCGCAATGC-G-ATTACGTAAA
1026507 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGATTACGTAAA
*
1026527 TCTCAATGCGATTTACGTAAA
1 TCGCAATGCGA-TTACGTAAA
*
1026548 TCGCAATGCGAAT-CTGTAAA
1 TCGCAATGCGATTAC-GTAAA
1026568 TCGCAA
1 TCGCAA
1026574 CGAGATTCTG
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
19 1 0.01
20 37 0.51
21 21 0.29
22 14 0.19
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (20 bp):
TCGCAATGCGATTACGTAAA
Found at i:1026583 original size:20 final size:20
Alignment explanation
Indices: 1026543--1026583 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
1026533 TGCGATTTAC
* *
1026543 GTAAATCGCAATGCGAATCT
1 GTAAATCGCAACGAGAATCT
*
1026563 GTAAATCGCAACGAGATTCT
1 GTAAATCGCAACGAGAATCT
1026583 G
1 G
1026584 ACTATCGCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (20 bp):
GTAAATCGCAACGAGAATCT
Found at i:1027462 original size:24 final size:24
Alignment explanation
Indices: 1027435--1027488 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
1027425 GTATTCGAAA
1027435 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
1027459 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
1027483 TTTGAT
1 TTTGAT
1027489 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:1029905 original size:20 final size:20
Alignment explanation
Indices: 1029880--1029973 Score: 136
Period size: 20 Copynumber: 4.7 Consensus size: 20
1029870 GACATTCATT
1029880 TGACTATCGCAACGC-GAATA
1 TGACTATCGCAACGCGGAA-A
*
1029900 TGACTATCGCAACACGGAAA
1 TGACTATCGCAACGCGGAAA
* * *
1029920 TGACTATCGCAATGCAGAAT
1 TGACTATCGCAACGCGGAAA
1029940 TGACTATCGCAACGCGGAAA
1 TGACTATCGCAACGCGGAAA
1029960 TGACTATCGCAACG
1 TGACTATCGCAACG
1029974 AGAGAATCGC
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
20 62 0.95
21 3 0.05
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.19
Consensus pattern (20 bp):
TGACTATCGCAACGCGGAAA
Found at i:1029944 original size:40 final size:40
Alignment explanation
Indices: 1029880--1029973 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
1029870 GACATTCATT
1029880 TGACTATCGCAACGCGAATATGACTATCGCAACACGGAAA
1 TGACTATCGCAACGCGAATATGACTATCGCAACACGGAAA
* *
1029920 TGACTATCGCAATGCAGAAT-TGACTATCGCAACGCGGAAA
1 TGACTATCGCAACGC-GAATATGACTATCGCAACACGGAAA
1029960 TGACTATCGCAACG
1 TGACTATCGCAACG
1029974 AGAGAATCGC
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
40 46 0.92
41 4 0.08
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.19
Consensus pattern (40 bp):
TGACTATCGCAACGCGAATATGACTATCGCAACACGGAAA
Found at i:1030002 original size:19 final size:19
Alignment explanation
Indices: 1029978--1030065 Score: 114
Period size: 19 Copynumber: 4.8 Consensus size: 19
1029968 GCAACGAGAG
1029978 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
1029997 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
1030016 AATCGCAA--CG-AGTG--
1 AATCGCAATGCGAAATGAA
1030030 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCG-AAATGAA
*
1030050 AATCGCAACGCGAAAT
1 AATCGCAATGCGAAAT
1030066 TAGTTTCGCG
Statistics
Matches: 60, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
14 8 0.13
16 5 0.08
17 2 0.03
18 3 0.05
19 31 0.52
20 11 0.18
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:1030021 original size:52 final size:52
Alignment explanation
Indices: 1029925--1030065 Score: 192
Period size: 53 Copynumber: 2.7 Consensus size: 52
1029915 GGAAATGACT
* ** **
1029925 ATCGCAATGCAGAATTGACTATCGCAACGCGGAAATGACTATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACGC-GAAATGAAAATCGCAACGAGAGA
* *
1029979 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGTGA
1 ATCGCAATGCGAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAGA
1030031 ATCGCAATGCGAAAATGAAAATCGCAACGCGAAAT
1 ATCGCAATGCG-AAATGAAAATCGCAACGCGAAAT
1030066 TAGTTTCGCG
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
52 31 0.40
53 37 0.47
54 10 0.13
ACGTcount: A:0.42, C:0.20, G:0.23, T:0.16
Consensus pattern (52 bp):
ATCGCAATGCGAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAGA
Found at i:1030134 original size:20 final size:20
Alignment explanation
Indices: 1030069--1030140 Score: 66
Period size: 20 Copynumber: 3.9 Consensus size: 20
1030059 GCGAAATTAG
**
1030069 TTTCGCGTTGCGATTTTCAT
1 TTTCGCGTTGCGATAGTCAT
*
1030089 TTTCGCATTGCGAT--TC-T
1 TTTCGCGTTGCGATAGTCAT
*
1030106 CTT---GTTGCGATAGTCAT
1 TTTCGCGTTGCGATAGTCAT
1030123 TTTCGCGTTGCGATAGTC
1 TTTCGCGTTGCGATAGTC
1030141 TGTTTTGCAT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
14 7 0.17
16 2 0.05
17 6 0.14
18 2 0.05
20 25 0.60
ACGTcount: A:0.12, C:0.21, G:0.22, T:0.44
Consensus pattern (20 bp):
TTTCGCGTTGCGATAGTCAT
Found at i:1030257 original size:14 final size:14
Alignment explanation
Indices: 1030238--1030274 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
1030228 CATCAATTAA
1030238 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
1030252 ACAAATCATCTTTT
1 ACAAATCAACATTT
1030266 ACAAATCAA
1 ACAAATCAA
1030275 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:1031692 original size:42 final size:42
Alignment explanation
Indices: 1031646--1031749 Score: 190
Period size: 42 Copynumber: 2.5 Consensus size: 42
1031636 CCTATTCAAC
* *
1031646 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTTGAGG
1 GATGATAGGGGCCTCTTGAACGGTGGGAGGGGACTCTTGAGG
1031688 GATGATAGGGGCCTCTTGAACGGTGGGAGGGGACTCTTGAGG
1 GATGATAGGGGCCTCTTGAACGGTGGGAGGGGACTCTTGAGG
1031730 GATGATAGGGGCCTCTTGAA
1 GATGATAGGGGCCTCTTGAA
1031750 TGATGACAGA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.20, C:0.15, G:0.42, T:0.22
Consensus pattern (42 bp):
GATGATAGGGGCCTCTTGAACGGTGGGAGGGGACTCTTGAGG
Found at i:1031754 original size:21 final size:21
Alignment explanation
Indices: 1031643--1031755 Score: 91
Period size: 21 Copynumber: 5.4 Consensus size: 21
1031633 GGACCTATTC
* *
1031643 AACGATGACAGTGGCCTCTTG
1 AACGATGAGAGGGGCCTCTTG
* * *
1031664 AACGGTGGGAGGGGACTCTTG
1 AACGATGAGAGGGGCCTCTTG
** *
1031685 AGGGATGATAGGGGCCTCTTG
1 AACGATGAGAGGGGCCTCTTG
* * *
1031706 AACGGTGGGAGGGGACTCTTG
1 AACGATGAGAGGGGCCTCTTG
** *
1031727 AGGGATGATAGGGGCCTCTTG
1 AACGATGAGAGGGGCCTCTTG
*
1031748 AATGATGA
1 AACGATGA
1031756 CAGATGAGTC
Statistics
Matches: 67, Mismatches: 25, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 67 1.00
ACGTcount: A:0.22, C:0.15, G:0.41, T:0.22
Consensus pattern (21 bp):
AACGATGAGAGGGGCCTCTTG
Found at i:1032263 original size:20 final size:20
Alignment explanation
Indices: 1032239--1032307 Score: 93
Period size: 20 Copynumber: 3.5 Consensus size: 20
1032229 GAAACTTAAA
1032239 ATCGCAATGCGAAAATAACT
1 ATCGCAATGCGAAAATAACT
* *
1032259 TTCGCAATGCGAAAATGACT
1 ATCGCAATGCGAAAATAACT
** *
1032279 ATCGCAATGCGAATTTGACT
1 ATCGCAATGCGAAAATAACT
1032299 ATCGCAATG
1 ATCGCAATG
1032308 AGAGAATCGC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGAAAATAACT
Found at i:1032401 original size:54 final size:53
Alignment explanation
Indices: 1032314--1032435 Score: 181
Period size: 54 Copynumber: 2.3 Consensus size: 53
1032304 AATGAGAGAA
* **
1032314 TCGCAATGCGATTTTCATTTCGCATTGCGATTCTCTCGTTACGATAGTCAAAT
1 TCGCATTGCGATAGTCATTTCGCATTGCGATTCTCTCGTTACGATAGTCAAAT
* **
1032367 TCGCATTGCGATAGTCATTTTCGCATTGCGATTCTCTCGTTGCGATAGTCATTT
1 TCGCATTGCGATAGTCA-TTTCGCATTGCGATTCTCTCGTTACGATAGTCAAAT
1032421 TCGCATTGCGATAGT
1 TCGCATTGCGATAGT
1032436 AAACTATTCT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 14 0.23
54 48 0.77
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.39
Consensus pattern (53 bp):
TCGCATTGCGATAGTCATTTCGCATTGCGATTCTCTCGTTACGATAGTCAAAT
Found at i:1032431 original size:20 final size:20
Alignment explanation
Indices: 1032355--1032435 Score: 93
Period size: 20 Copynumber: 4.3 Consensus size: 20
1032345 TCTCTCGTTA
**
1032355 CGATAGTCAAATTCGCATTG
1 CGATAGTCATTTTCGCATTG
1032375 CGATAGTCATTTTCGCATTG
1 CGATAGTCATTTTCGCATTG
*
1032395 CGAT--TC--TCTCG--TTG
1 CGATAGTCATTTTCGCATTG
1032409 CGATAGTCATTTTCGCATTG
1 CGATAGTCATTTTCGCATTG
1032429 CGATAGT
1 CGATAGT
1032436 AAACTATTCT
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
14 7 0.14
16 6 0.12
18 6 0.12
20 32 0.63
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (20 bp):
CGATAGTCATTTTCGCATTG
Found at i:1034367 original size:20 final size:20
Alignment explanation
Indices: 1034310--1034378 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
1034300 GAAACTTTAA
* **
1034310 ATCGCAACAC-AAAATGAAA
1 ATCGCAACGCGAAAATGACT
*
1034329 ATCGCAACACGAAAATGACT
1 ATCGCAACGCGAAAATGACT
**
1034349 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
1034369 ATCGCAACGC
1 ATCGCAACGC
1034379 AAGAATCGCA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
19 10 0.23
20 34 0.77
ACGTcount: A:0.42, C:0.26, G:0.16, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:1034406 original size:19 final size:19
Alignment explanation
Indices: 1034308--1034407 Score: 75
Period size: 20 Copynumber: 5.4 Consensus size: 19
1034298 ATGAAACTTT
* *
1034308 AAATCGCAACACAAAATGA
1 AAATCGCAACGCGAAATGA
*
1034327 AAATCGCAACACGAAAATGA
1 AAATCGCAACGCG-AAATGA
** *
1034347 CTATCGCAACGCGAATTTGA
1 AAATCGCAACGCGAA-ATGA
**
1034367 CTATCGCAACGC--AA-G-
1 AAATCGCAACGCGAAATGA
1034382 -AATCGCAACGCGAAATGA
1 AAATCGCAACGCGAAATGA
1034400 AAATCGCA
1 AAATCGCA
1034408 TTGCGATTCT
Statistics
Matches: 67, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
14 10 0.15
16 3 0.04
17 1 0.01
18 1 0.01
19 21 0.31
20 31 0.46
ACGTcount: A:0.45, C:0.24, G:0.17, T:0.14
Consensus pattern (19 bp):
AAATCGCAACGCGAAATGA
Found at i:1034466 original size:21 final size:20
Alignment explanation
Indices: 1034420--1034469 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
1034410 GCGATTCTCT
1034420 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
* **
1034440 CATTGCGATAGTCATTTTTCG
1 CGTTGCGATAGTCA-AATTCG
1034461 CGTTGCGAT
1 CGTTGCGAT
1034470 TCACTCGTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.36
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCG
Found at i:1034864 original size:22 final size:21
Alignment explanation
Indices: 1034803--1034864 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
1034793 TGACCGTGAA
*
1034803 TGATTTCGTCGGAGATGGAGAC
1 TGATTTCGTC-GAGATGGGGAC
1034825 TG-TTATCGTC--G-TGGGGAC
1 TGATT-TCGTCGAGATGGGGAC
1034843 TGATTTCGTCAGAGATGGGGAC
1 TGATTTCGTC-GAGATGGGGAC
1034865 GGATGTCGCC
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
18 13 0.39
19 3 0.09
21 3 0.09
22 14 0.42
ACGTcount: A:0.19, C:0.15, G:0.37, T:0.29
Consensus pattern (21 bp):
TGATTTCGTCGAGATGGGGAC
Found at i:1035086 original size:20 final size:20
Alignment explanation
Indices: 1035059--1035152 Score: 107
Period size: 20 Copynumber: 4.7 Consensus size: 20
1035049 CGATAGTTAG
1035059 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
1035079 ATTTGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
* * **
1035099 AATCGCATTGCGATTTTCCAA
1 ATTCGCATTGCGA-TTTACGT
* *
1035120 ATTCGCGTTGCGATTTACCT
1 ATTCGCATTGCGATTTACGT
*
1035140 ATTCTCATTGCGA
1 ATTCGCATTGCGA
1035153 ATTATGAAAA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 45 0.75
21 15 0.25
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.39
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:1035175 original size:21 final size:21
Alignment explanation
Indices: 1035149--1035194 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
1035139 TATTCTCATT
1035149 GCGAATTAT-GAAAATCGCAAC
1 GCGAATT-TGGAAAATCGCAAC
* *
1035170 GCGAATTTGGGAAATCGCAAT
1 GCGAATTTGGAAAATCGCAAC
1035191 GCGA
1 GCGA
1035195 TAGTCAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (21 bp):
GCGAATTTGGAAAATCGCAAC
Found at i:1035637 original size:2 final size:2
Alignment explanation
Indices: 1035630--1035686 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
1035620 ATTTAAGTAT
1035630 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1035672 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
1035687 GGGTTTCTTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1037647 original size:22 final size:22
Alignment explanation
Indices: 1037622--1037664 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
1037612 GAACCGGTCT
1037622 GACCCGACCCGACCGTTGACCC
1 GACCCGACCCGACCGTTGACCC
1037644 GACCCGACCCGACCGTTGACC
1 GACCCGACCCGACCGTTGACC
1037665 GTTGACTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.19, C:0.49, G:0.23, T:0.09
Consensus pattern (22 bp):
GACCCGACCCGACCGTTGACCC
Found at i:1037666 original size:7 final size:7
Alignment explanation
Indices: 1037654--1037684 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
1037644 GACCCGACCC
1037654 GACCGTT
1 GACCGTT
1037661 GACCGTT
1 GACCGTT
*
1037668 GACTGTT
1 GACCGTT
1037675 GACCGTT
1 GACCGTT
1037682 GAC
1 GAC
1037685 TTTCTTTGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.16, C:0.26, G:0.29, T:0.29
Consensus pattern (7 bp):
GACCGTT
Found at i:1044426 original size:28 final size:29
Alignment explanation
Indices: 1044377--1044454 Score: 81
Period size: 28 Copynumber: 2.8 Consensus size: 29
1044367 GGCTGCTGGA
* *
1044377 AACCGGTTTAACCGGTTCTGACCGGTTTG
1 AACCGGTTTAACCGGTTCTGACAGGTCTG
*
1044406 -ACCGGTTTCAATCGGTT-TGACAGGTCTG
1 AACCGGTTT-AACCGGTTCTGACAGGTCTG
* *
1044434 AACCGGTCTGACCGG-TCTGAC
1 AACCGGTTTAACCGGTTCTGAC
1044455 CCGACCCGAC
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
27 1 0.03
28 25 0.62
29 14 0.35
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.28
Consensus pattern (29 bp):
AACCGGTTTAACCGGTTCTGACAGGTCTG
Found at i:1044449 original size:9 final size:9
Alignment explanation
Indices: 1044387--1044455 Score: 57
Period size: 9 Copynumber: 7.3 Consensus size: 9
1044377 AACCGGTTTA
1044387 ACCGGTTCTG
1 ACCGG-TCTG
*
1044397 ACCGGTTTG
1 ACCGGTCTG
* *
1044406 ACCGGTTTCA
1 ACCGGTCT-G
* *
1044416 ATCGGTTTG
1 ACCGGTCTG
*
1044425 ACAGGTCTG
1 ACCGGTCTG
1044434 AACCGGTCTG
1 -ACCGGTCTG
1044444 ACCGGTCTG
1 ACCGGTCTG
1044453 ACC
1 ACC
1044456 CGACCCGACC
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
9 29 0.59
10 20 0.41
ACGTcount: A:0.16, C:0.28, G:0.29, T:0.28
Consensus pattern (9 bp):
ACCGGTCTG
Found at i:1044452 original size:19 final size:19
Alignment explanation
Indices: 1044377--1044453 Score: 84
Period size: 19 Copynumber: 4.1 Consensus size: 19
1044367 GGCTGCTGGA
*
1044377 AACCGGTTTAACCGGTTCTG
1 AACCGGTTTGACCGG-TCTG
* *
1044397 -ACCGGTTTGACCGGTTTC
1 AACCGGTTTGACCGGTCTG
* *
1044415 AATCGGTTTGACAGGTCTG
1 AACCGGTTTGACCGGTCTG
*
1044434 AACCGGTCTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
1044453 A
1 A
1044454 CCCGACCCGA
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
18 2 0.04
19 44 0.96
ACGTcount: A:0.18, C:0.25, G:0.29, T:0.29
Consensus pattern (19 bp):
AACCGGTTTGACCGGTCTG
Found at i:1044479 original size:22 final size:22
Alignment explanation
Indices: 1044453--1044494 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
1044443 GACCGGTCTG
1044453 ACCCGACCCGACCGTTGACCCA
1 ACCCGACCCGACCGTTGACCCA
1044475 ACCCGACCCGACCGTTGACC
1 ACCCGACCCGACCGTTGACC
1044495 GTTGACTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.50, G:0.19, T:0.10
Consensus pattern (22 bp):
ACCCGACCCGACCGTTGACCCA
Found at i:1046713 original size:59 final size:60
Alignment explanation
Indices: 1046643--1046763 Score: 217
Period size: 60 Copynumber: 2.0 Consensus size: 60
1046633 GCCTTTCTCC
1046643 GTACAATCTCTTTGAA-CGTCTCTCTTTCCCTACATAGTATCTTTGTATTAAGCAAGTTT
1 GTACAATCTCTTTGAACCGTCTCTCTTTCCCTACATAGTATCTTTGTATTAAGCAAGTTT
**
1046702 GTACAATCTCTTTGAACCGTCTCTCTTTCTGTACATAGTATCTTTGTATTAAGCAAGTTT
1 GTACAATCTCTTTGAACCGTCTCTCTTTCCCTACATAGTATCTTTGTATTAAGCAAGTTT
1046762 GT
1 GT
1046764 CATGTATCTG
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
59 16 0.27
60 43 0.73
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43
Consensus pattern (60 bp):
GTACAATCTCTTTGAACCGTCTCTCTTTCCCTACATAGTATCTTTGTATTAAGCAAGTTT
Found at i:1049599 original size:20 final size:20
Alignment explanation
Indices: 1049574--1049705 Score: 156
Period size: 20 Copynumber: 6.5 Consensus size: 20
1049564 GTTGAAAATT
1049574 GCGTTGCGATTTTCCATTTC
1 GCGTTGCGATTTTCCATTTC
1049594 GCGTTGCGATTTTCCATTTC
1 GCGTTGCGATTTTCCATTTC
* ** **
1049614 GCGTTGCGATAGTTGAAAATC
1 GCGTTGCGAT-TTTCCATTTC
1049635 GCGTTGCGATTTTCCATTTC
1 GCGTTGCGATTTTCCATTTC
* ** **
1049655 GCGTTGCGATAGTTAGAAATC
1 GCGTTGCGAT-TTTCCATTTC
1049676 GCGTTGCGATTTTCCATTTC
1 GCGTTGCGATTTTCCATTTC
1049696 GCGTTGCGAT
1 GCGTTGCGAT
1049706 AGTTGAAAAT
Statistics
Matches: 90, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
20 60 0.67
21 30 0.33
ACGTcount: A:0.16, C:0.21, G:0.24, T:0.39
Consensus pattern (20 bp):
GCGTTGCGATTTTCCATTTC
Found at i:1049612 original size:61 final size:61
Alignment explanation
Indices: 1049547--1049785 Score: 241
Period size: 61 Copynumber: 3.9 Consensus size: 61
1049537 ATTCGCGTTG
*
1049547 CATTTCGCGTTGCGATAGTTGAAAATTGCGTTGCGATTTTCCATTTCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATTTTC
* *
1049608 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTA
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGAT-TTTC
* ** * ** ** * ** ** * *
1049670 GAAATCGCGTTGCGAT-TTTCCATTTCGCGTTGCGATAGTTGAAAATCGC--CGCGATTTTT
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGAT-TTTCCATTTCGCGTTGCGATTTTC
* * * *
1049729 AATTTCGCGTTGCGATAGATGAAAATCGCTTTGTGATTTTCCATTTCGCGTTGCGAT
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGAT
1049786 AGTCTACAGT
Statistics
Matches: 137, Mismatches: 36, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
59 22 0.16
60 17 0.12
61 76 0.55
62 22 0.16
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.38
Consensus pattern (61 bp):
CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATTTTC
Found at i:1049637 original size:41 final size:41
Alignment explanation
Indices: 1049592--1049788 Score: 310
Period size: 41 Copynumber: 4.9 Consensus size: 41
1049582 ATTTTCCATT
1049592 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAA
1049633 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTT-AGAAA
1 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGA-AAA
1049674 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAA
* ** *
1049715 TCGC--CGCGATTTTTAATTTCGCGTTGCGATAGATGAAAA
1 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAA
* *
1049754 TCGCTTTGTGATTTTCCATTTCGCGTTGCGATAGT
1 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGT
1049789 CTACAGTTTC
Statistics
Matches: 143, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 35 0.24
40 1 0.01
41 106 0.74
42 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (41 bp):
TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAA
Found at i:1049644 original size:82 final size:82
Alignment explanation
Indices: 1049551--1049788 Score: 270
Period size: 80 Copynumber: 2.9 Consensus size: 82
1049541 GCGTTGCATT
* * **
1049551 TCGCGTTGCGATAGTTGAAAATT-GCGTTGCGAT-TTTCCATTTCGCGTTGCGATTTTCCATTTC
1 TCGCGTTGCGAT--TTGAAAATTCGCGTTGCGATAGTTACAAATCGCGTTGCGATTTTCCATTTC
1049614 GCGTTGCGATAGTTGAAAA
64 GCGTTGCGATAGTTGAAAA
*** * *
1049633 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTAGAAATCGCGTTGCGATTTTCCATTTCGC
1 TCGCGTTGCGATTTGAAAATTCGCGTTGCGATAGTTACAAATCGCGTTGCGATTTTCCATTTCGC
1049698 GTTGCGATAGTTGAAAA
66 GTTGCGATAGTTGAAAA
* ** * * * *
1049715 TCGC--CGCGATTTTTAATTTCGCGTTGCGATAGATGA-AAATCGCTTTGTGATTTTCCATTTCG
1 TCGCGTTGCGATTTGAAAATTCGCGTTGCGATAG-TTACAAATCGCGTTGCGATTTTCCATTTCG
1049777 CGTTGCGATAGT
65 CGTTGCGATAGT
1049789 CTACAGTTTC
Statistics
Matches: 138, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
80 66 0.48
81 12 0.09
82 60 0.43
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (82 bp):
TCGCGTTGCGATTTGAAAATTCGCGTTGCGATAGTTACAAATCGCGTTGCGATTTTCCATTTCGC
GTTGCGATAGTTGAAAA
Found at i:1049773 original size:80 final size:81
Alignment explanation
Indices: 1049592--1049788 Score: 308
Period size: 80 Copynumber: 2.4 Consensus size: 81
1049582 ATTTTCCATT
* *
1049592 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGC
1 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGCG-CGCGATTTTCAATTTCGC
*
1049657 GTTGCGATAGTTAGAAA
65 GTTGCGATAGTGAGAAA
*
1049674 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGC-CGCGATTTTTAATTTCGCG
1 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGCGCGATTTTCAATTTCGCG
1049738 TTGCGATAGATGA-AAA
66 TTGCGATAG-TGAGAAA
* *
1049754 TCGCTTTGTGATTTTCCATTTCGCGTTGCGATAGT
1 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGT
1049789 CTACAGTTTC
Statistics
Matches: 108, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
80 61 0.56
81 2 0.02
82 45 0.42
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (81 bp):
TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGCGCGATTTTCAATTTCGCG
TTGCGATAGTGAGAAA
Found at i:1050401 original size:10 final size:11
Alignment explanation
Indices: 1050386--1050419 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
1050376 CCGTCTAGTC
1050386 TCGGGTCG-GG
1 TCGGGTCGTGG
1050396 TCGGGTCGTGG
1 TCGGGTCGTGG
1050407 TCGTGGTCGTGG
1 TCG-GGTCGTGG
1050419 T
1 T
1050420 TGTGGATACT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 8 0.36
11 5 0.23
12 9 0.41
ACGTcount: A:0.00, C:0.18, G:0.53, T:0.29
Consensus pattern (11 bp):
TCGGGTCGTGG
Found at i:1050593 original size:19 final size:19
Alignment explanation
Indices: 1050569--1050645 Score: 91
Period size: 19 Copynumber: 3.9 Consensus size: 19
1050559 ACTATCGCAA
1050569 TTGGAAAATCGCAACGAAT
1 TTGGAAAATCGCAACGAAT
1050588 TTGGAAAATCGCAACGACAACT
1 TTGGAAAATCGCAACG--AA-T
* * **
1050610 ATAGACTATCGCAACGAAT
1 TTGGAAAATCGCAACGAAT
1050629 TTGGAAAATCGCAACGA
1 TTGGAAAATCGCAACGA
1050646 CAACTGTAGA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
19 30 0.64
20 2 0.04
21 2 0.04
22 13 0.28
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (19 bp):
TTGGAAAATCGCAACGAAT
Found at i:1050623 original size:22 final size:22
Alignment explanation
Indices: 1050595--1050666 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 22
1050585 AATTTGGAAA
1050595 ATCGCAACGACAACTATAGACT
1 ATCGCAACGACAACTATAGACT
* * **
1050617 ATCGCAACG--AA-TTTGGAAA
1 ATCGCAACGACAACTATAGACT
*
1050636 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTATAGACT
1050658 ATCGCAACG
1 ATCGCAACG
1050667 CGAAATGAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 13 0.33
20 2 0.05
21 2 0.05
22 22 0.56
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.18
Consensus pattern (22 bp):
ATCGCAACGACAACTATAGACT
Found at i:1050633 original size:41 final size:41
Alignment explanation
Indices: 1050576--1050666 Score: 173
Period size: 41 Copynumber: 2.2 Consensus size: 41
1050566 CAATTGGAAA
1050576 ATCGCAACGAATTTGGAAAATCGCAACGACAACTATAGACT
1 ATCGCAACGAATTTGGAAAATCGCAACGACAACTATAGACT
*
1050617 ATCGCAACGAATTTGGAAAATCGCAACGACAACTGTAGACT
1 ATCGCAACGAATTTGGAAAATCGCAACGACAACTATAGACT
1050658 ATCGCAACG
1 ATCGCAACG
1050667 CGAAATGAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.19
Consensus pattern (41 bp):
ATCGCAACGAATTTGGAAAATCGCAACGACAACTATAGACT
Found at i:1050677 original size:41 final size:41
Alignment explanation
Indices: 1050576--1050686 Score: 161
Period size: 41 Copynumber: 2.7 Consensus size: 41
1050566 CAATTGGAAA
*
1050576 ATCGCAACGAATTTGGAAAATCGCAACGACAACTATAGACT
1 ATCGCAACGAATATGGAAAATCGCAACGACAACTATAGACT
* *
1050617 ATCGCAACGAATTTGGAAAATCGCAACGACAACTGTAGACT
1 ATCGCAACGAATATGGAAAATCGCAACGACAACTATAGACT
*
1050658 ATCGCAACGCGAA-ATGAAAAATCGCAACG
1 ATCGCAA--CGAATATGGAAAATCGCAACG
1050687 CGATTTTCAA
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
41 47 0.72
42 14 0.22
43 4 0.06
ACGTcount: A:0.41, C:0.23, G:0.19, T:0.17
Consensus pattern (41 bp):
ATCGCAACGAATATGGAAAATCGCAACGACAACTATAGACT
Found at i:1052258 original size:30 final size:29
Alignment explanation
Indices: 1052219--1052279 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 29
1052209 CAATTTTGAA
*
1052219 AAAAATAATAGTTCAGATACTAAAATAGAT
1 AAAAATAATAGTTCAGATA-TAAAATACAT
* *
1052249 AAAACTAATAGTTTAGATATAAAATACAT
1 AAAAATAATAGTTCAGATATAAAATACAT
1052278 AA
1 AA
1052280 TTTAGCCATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.57, C:0.07, G:0.08, T:0.28
Consensus pattern (29 bp):
AAAAATAATAGTTCAGATATAAAATACAT
Found at i:1052283 original size:20 final size:20
Alignment explanation
Indices: 1052247--1052284 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1052237 ACTAAAATAG
*
1052247 ATAAAACTAATAGTTTAGAT
1 ATAAAACTAATAATTTAGAT
1052267 ATAAAA-TACATAATTTAG
1 ATAAAACTA-ATAATTTAG
1052285 CCATAATTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.53, C:0.05, G:0.08, T:0.34
Consensus pattern (20 bp):
ATAAAACTAATAATTTAGAT
Found at i:1054955 original size:15 final size:15
Alignment explanation
Indices: 1054937--1054967 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1054927 CTTTGTTGTC
*
1054937 TTAATCTTCATCTTG
1 TTAATCTTAATCTTG
1054952 TTAATCTTAATCTTG
1 TTAATCTTAATCTTG
1054967 T
1 T
1054968 GTTATTACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.16, G:0.06, T:0.55
Consensus pattern (15 bp):
TTAATCTTAATCTTG
Found at i:1055389 original size:2 final size:2
Alignment explanation
Indices: 1055382--1055415 Score: 59
Period size: 2 Copynumber: 16.5 Consensus size: 2
1055372 GAGAATGAGC
1055382 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TCA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T
1055416 CTTGCTCCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1062838 original size:282 final size:282
Alignment explanation
Indices: 1062327--1063502 Score: 1492
Period size: 282 Copynumber: 4.2 Consensus size: 282
1062317 ATCTAACGAT
* * * *
1062327 TTTAGTACTTAAACTATTAATTTTGGTCCGTTTTAGTA-CTAAAACTT--TTAATTTTTCCAATA
1 TTTAGTACCTAAACTATCAATTTTGATCCGTTTTAGTACCT-AAACTTAATT--TTTTTTCAA-A
* * * * *
1062389 -CCATACCTAAAATTTAGGTACTAAAACGGACCAATATTGATATTTTAGGTACTAAACACATTAA
62 GCCATACCTAAAGTTTAGGTACTAAAACGGACCAAAACTGATAGTTTAGGTACTAAACACGTTAA
* * * * *
1062453 GTTTTTAATGGTGGGATACTAAAATGAATTGAAAACTAAACGTT-TGGTATATTTTTGAAAAAAA
127 GTTTTTAACGGTGTGATACTAAAATGAAATGAAAACTAAACGTTAT-GTATGTTTTTGAAAAAAT
* *
1062517 TGAAAGTTTAGGTGCTAAGACAGACCAAAACTGATAGTTTGGGTACCAAATGTGTAGTTTACCTA
191 TGAAAGTTTAGGTGCTAAGACAGACCAAAACTAATAGTTTAGGTACCAAATGTGTAGTTTACCTA
*
1062582 AATATAAATTTTTGGGTAAACTACACA
256 AATATAAATTTTTGGGTAAACTACGCA
*
1062609 TTTAGTACCTAAACTATCAATTTTGATACGTTTTAGTACCTAAACTTAATTTTTTTTCAAAGCCA
1 TTTAGTACCTAAACTATCAATTTTGATCCGTTTTAGTACCTAAACTTAATTTTTTTTCAAAGCCA
*
1062674 TACCTAAAGTTTAGGTACTAAAACGGACCAAAACTGATAGTTTAGGTACTAAACATGTTAAGTTT
66 TACCTAAAGTTTAGGTACTAAAACGGACCAAAACTGATAGTTTAGGTACTAAACACGTTAAGTTT
* * * *
1062739 TTAATGGTGTAATACTAAAATGAAATGAAAACTAAACATTATGTATGCTTTTGAAAAAATTGAAA
131 TTAACGGTGTGATACTAAAATGAAATGAAAACTAAACGTTATGTATGTTTTTGAAAAAATTGAAA
* * ** * *
1062804 GTTTAGGTGTTAAAATGGACCAGAACTAATAGTTTGGGTACCAAATGTGTAGTTTACCTAAATAT
196 GTTTAGGTGCTAAGACAGACCAAAACTAATAGTTTAGGTACCAAATGTGTAGTTTACCTAAATAT
*
1062869 AAATTTTTTGGATAAACTACGCA
261 AAA-TTTTTGGGTAAACTACGCA
* * * * *
1062892 TTTAGTACCTAAGCTATCAGTTTTAATCCGTTTTAGTACCTAAACTTTATTATTTTTTTCAAAGT
1 TTTAGTACCTAAACTATCAATTTTGATCCGTTTTAGTACCTAAAC-TTAAT-TTTTTTTCAAAGC
* * *
1062957 CATACCTAAAGTTTAGGTACTAAAACGGAACAAAACTGATAGTTTAGGCACTAAACACGTTAAGA
64 CATACCTAAAGTTTAGGTACTAAAACGGACCAAAACTGATAGTTTAGGTACTAAACACGTTAAGT
* * *
1063022 TTTTAACGGTG-CA-A-TAAAATAAAATGAAAACTAAACGTTATGCATGTTTTTGAAAAAATTGA
129 TTTTAACGGTGTGATACTAAAATGAAATGAAAACTAAACGTTATGTATGTTTTTGAAAAAATTGA
1063084 AAGTTTAGGTGCTAAGACAGACCAAAACTAATAGTTTAGGTACCAAATGTGTAG-TTACCTAAAT
194 AAGTTTAGGTGCTAAGACAGACCAAAACTAATAGTTTAGGTACCAAATGTGTAGTTTACCTAAAT
**
1063148 ATATTTTTTTTGGGTAAACTACGCA
259 ATA-AATTTTTGGGTAAACTACGCA
*
1063173 TTTAGTACCTAAACTATCAATTTTGATCCGTTTTAGTACCTAAACTTTTAA-TTTTTTTCAAAAC
1 TTTAGTACCTAAACTATCAATTTTGATCCGTTTTAGTACCTAAAC--TTAATTTTTTTTCAAAGC
* * *
1063237 CATACTTAAAGTTTAGGTACTAAAACAGACCAAAACTGATAGTTTATGTACTAAACACGTTAAGT
64 CATACCTAAAGTTTAGGTACTAAAACGGACCAAAACTGATAGTTTAGGTACTAAACACGTTAAGT
* * * * * * * * *
1063302 TTTTAACGGT-TGGTAGTAAAATGGAATAAAAATTAAATGTTAGGTAAGTTTTTTAAAAAATTGA
129 TTTTAACGGTGTGATACTAAAATGAAATGAAAACTAAACGTTATGTATGTTTTTGAAAAAATTGA
* * * * * ***
1063366 AAGTTTAGGTGCTAAGACGGACCAAAATTGATAGTCTAGGTATCAAATGCACAGTTTACCTAAAT
194 AAGTTTAGGTGCTAAGACAGACCAAAACTAATAGTTTAGGTACCAAATGTGTAGTTTACCTAAAT
* * *
1063431 ATCAATTTTTTTGGTAAACTATGCA
259 AT-AAATTTTTGGGTAAACTACGCA
* * * * ** * *
1063456 TTTTGTACATAAACCATCAATTTTAATTTGTTTTAATACTTAAACTT
1 TTTAGTACCTAAACTATCAATTTTGATCCGTTTTAGTACCTAAACTT
1063503 TTTTTTATAT
Statistics
Matches: 786, Mismatches: 93, Indels: 31
0.86 0.10 0.03
Matches are distributed among these distances:
280 80 0.10
281 77 0.10
282 409 0.52
283 129 0.16
284 8 0.01
285 83 0.11
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (282 bp):
TTTAGTACCTAAACTATCAATTTTGATCCGTTTTAGTACCTAAACTTAATTTTTTTTCAAAGCCA
TACCTAAAGTTTAGGTACTAAAACGGACCAAAACTGATAGTTTAGGTACTAAACACGTTAAGTTT
TTAACGGTGTGATACTAAAATGAAATGAAAACTAAACGTTATGTATGTTTTTGAAAAAATTGAAA
GTTTAGGTGCTAAGACAGACCAAAACTAATAGTTTAGGTACCAAATGTGTAGTTTACCTAAATAT
AAATTTTTGGGTAAACTACGCA
Found at i:1067806 original size:20 final size:20
Alignment explanation
Indices: 1067781--1067818 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1067771 CTCGAATTAC
1067781 AAAAT-AATTATAAATAATAG
1 AAAATAAATTA-AAATAATAG
1067801 AAAATAAATTAAAATAAT
1 AAAATAAATTAAAATAAT
1067819 TATGCTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (20 bp):
AAAATAAATTAAAATAATAG
Found at i:1070039 original size:31 final size:31
Alignment explanation
Indices: 1069980--1070042 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
1069970 TAAAAATAAG
*
1069980 TGTTTAACGTATTCTATATTACACTTTTAGT
1 TGTTTAACGTATTCAATATTACACTTTTAGT
* * * *
1070011 TGTTTAACGTTTTCAATGTTATATTTTTAGT
1 TGTTTAACGTATTCAATATTACACTTTTAGT
1070042 T
1 T
1070043 ACTCTGGCTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.24, C:0.10, G:0.11, T:0.56
Consensus pattern (31 bp):
TGTTTAACGTATTCAATATTACACTTTTAGT
Found at i:1081147 original size:42 final size:42
Alignment explanation
Indices: 1081100--1081186 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
1081090 TAAGTCTTTC
* *
1081100 GGGCCATCAATAAGTATTTCGAGCATGATGCTTATATCCTTA
1 GGGCCATCAATAAGTATTTCGAGCATGATGATTAAATCCTTA
* *
1081142 GGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTA
1 GGGCCATCAATAAGTATTTCGAGCATGATGATTAAATCCTTA
1081184 GGG
1 GGG
1081187 TAATTTGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (42 bp):
GGGCCATCAATAAGTATTTCGAGCATGATGATTAAATCCTTA
Found at i:1081243 original size:13 final size:13
Alignment explanation
Indices: 1081225--1081249 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1081215 TGAAGCAAAC
1081225 CCATCAGTAAGTG
1 CCATCAGTAAGTG
1081238 CCATCAGTAAGT
1 CCATCAGTAAGT
1081250 CTTTCGAGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (13 bp):
CCATCAGTAAGTG
Found at i:1081316 original size:22 final size:22
Alignment explanation
Indices: 1081245--1081318 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
1081235 GTGCCATCAG
1081245 TAAGTCTTTCGAGCATGATGAT
1 TAAGTCTTTCGAGCATGATGAT
* * * *
1081267 GAAGT-TCTTCGGGC-T-ATCAG
1 TAAGTCT-TTCGAGCATGATGAT
1081287 TAAGTCTTTCGAGCATGATGAT
1 TAAGTCTTTCGAGCATGATGAT
*
1081309 TAAATCTTTC
1 TAAGTCTTTC
1081319 AGGTAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
20 13 0.33
21 4 0.10
22 22 0.56
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (22 bp):
TAAGTCTTTCGAGCATGATGAT
Found at i:1081332 original size:42 final size:42
Alignment explanation
Indices: 1081240--1081321 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
1081230 AGTAAGTGCC
* *
1081240 ATCAGTAAGTCTTTCGAGCATGATGATGAAGTTCTTCGGGCT
1 ATCAGTAAGTCTTTCGAGCATGATGATGAAATTCTTCAGGCT
*
1081282 ATCAGTAAGTCTTTCGAGCATGATGATTAAA-TCTTTCAGG
1 ATCAGTAAGTCTTTCGAGCATGATGATGAAATTC-TTCAGG
1081322 TAATTTGTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 2 0.06
42 34 0.94
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (42 bp):
ATCAGTAAGTCTTTCGAGCATGATGATGAAATTCTTCAGGCT
Found at i:1081345 original size:135 final size:135
Alignment explanation
Indices: 1081102--1081371 Score: 393
Period size: 135 Copynumber: 2.0 Consensus size: 135
1081092 AGTCTTTCGG
* *
1081102 GCCATCAATAAGTATTTCGAGCATGATGCTTATATCCTTAGGGCCATCAGTAAGTCTTTCGAGCA
1 GCCATCAATAAGTATTTCGAGCATGATGATGATATCCTTAGGGCCATCAGTAAGTCTTTCGAGCA
*
1081167 TGATGATTAAATCCTTAGGGTAATTTGTAAGCCTTCACGGAAGAGTAGTGAAGCAAACCCATCAG
66 TGATGATTAAATCCTTAGGGTAATTTGTAAGCCTTCACGGAAGAGTAGTGAAGAAAACCCATCAG
1081232 TAAGT
131 TAAGT
* * * * *
1081237 GCCATCAGTAAGTCTTTCGAGCATGATGATGA-AGTTCTTCGGGCTATCAGTAAGTCTTTCGAGC
1 GCCATCAATAAGTATTTCGAGCATGATGATGATA-TCCTTAGGGCCATCAGTAAGTCTTTCGAGC
* * *
1081301 ATGATGATTAAATCTTTCA-GGTAATTTGTAAGCCTTCATC-GAAGAGTAGTTAAGAAAATCCAT
65 ATGATGATTAAATCCTT-AGGGTAATTTGTAAGCCTTCA-CGGAAGAGTAGTGAAGAAAACCCAT
1081364 CAGTAAGT
128 CAGTAAGT
1081372 CTTTCGAGCA
Statistics
Matches: 121, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
134 1 0.01
135 118 0.98
136 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (135 bp):
GCCATCAATAAGTATTTCGAGCATGATGATGATATCCTTAGGGCCATCAGTAAGTCTTTCGAGCA
TGATGATTAAATCCTTAGGGTAATTTGTAAGCCTTCACGGAAGAGTAGTGAAGAAAACCCATCAG
TAAGT
Found at i:1082149 original size:165 final size:165
Alignment explanation
Indices: 1081879--1082303 Score: 551
Period size: 165 Copynumber: 2.6 Consensus size: 165
1081869 CCCGTAGGCA
* * * *
1081879 GAAGATTGTTCAAGTTC--TACTC-CTTGAAGCAAGAGGGAGC-GAACCCGTTTTATGAAGATTA
1 GAAGATTGTTCGAGTTCTATACTCTC-TGAAGCAATAGAGAGCAG-ACCCGTTTTATGAAGATTG
* * *
1081940 TTCGAGTTTTATACTCTCTGAAGAAATAGAGAGCGGACCCGTTTTATGAAGACTGTTCGAGTTCT
64 TTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTATGAAGACTGTTCAAGTTCT
1082005 ATACTCTCTGAAGGAATAGAGAGTGGACTCATTTT-AT
129 ATACTCTCTGAAGGAATAGAGAGTGGACTC-TTTTGAT
*
1082042 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCAGACCCGTTTTATGAAGATTGTT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGCAATAGAGAGCAGACCCGTTTTATGAAGATTGTT
* * * *
1082107 AGAGTTCTATACTCTCTGAAGGGATAGAGAGCGGACCCGTTTTTTGAAGATTGTTCAAGTTCTAT
66 CGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTATGAAGACTGTTCAAGTTCTAT
*
1082172 ACTCTCTGAAGGAATAGAGAGTGGACTCTTTTGTT
131 ACTCTCTGAAGGAATAGAGAGTGGACTCTTTTGAT
* * ** ** *
1082207 GAAGATTATTTGAG-TCTTATACTCTCTGAATTAATAGAGAGCAGATACATTTTATGAAGATTGT
1 GAAGATTGTTCGAGTTC-TATACTCTCTGAAGCAATAGAGAGCAGACCCGTTTTATGAAGATTGT
*
1082271 TCGAG-TCTTATACT-TCCTGAAGGAATAGGGAGC
65 TCGAGTTC-TATACTCT-CTGAAGGAATAGAGAGC
1082304 AGGCTCGTCA
Statistics
Matches: 231, Mismatches: 23, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
163 16 0.07
164 9 0.04
165 204 0.88
166 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (165 bp):
GAAGATTGTTCGAGTTCTATACTCTCTGAAGCAATAGAGAGCAGACCCGTTTTATGAAGATTGTT
CGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTATGAAGACTGTTCAAGTTCTAT
ACTCTCTGAAGGAATAGAGAGTGGACTCTTTTGAT
Found at i:1082305 original size:55 final size:55
Alignment explanation
Indices: 1081879--1082303 Score: 495
Period size: 55 Copynumber: 7.8 Consensus size: 55
1081869 CCCGTAGGCA
* * * * *
1081879 GAAGATTGTTCAAGTTC--TACTC-CTTGAAGCAAGAGGGAGCGAACCCGTTTTAT
1 GAAGATTGTTCGAGTTCTATACTCTC-TGAAGGAATAGAGAGCGGACCCGTTTTAT
* * *
1081932 GAAGATTATTCGAGTTTTATACTCTCTGAAGAAATAGAGAGCGGACCCGTTTTAT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTAT
* * * *
1081987 GAAGACTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGTGGACTCATTTTAT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTAT
*
1082042 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCAGACCCGTTTTAT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTAT
* * *
1082097 GAAGATTGTTAGAGTTCTATACTCTCTGAAGGGATAGAGAGCGGACCCGTTTTTT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTAT
* * * *
1082152 GAAGATTGTTCAAGTTCTATACTCTCTGAAGGAATAGAGAGTGGACTC-TTTTGTT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTT-AT
* * ** * ** *
1082207 GAAGATTATTTGAG-TCTTATACTCTCTGAATTAATAGAGAGCAGATACATTTTAT
1 GAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTAT
*
1082262 GAAGATTGTTCGAG-TCTTATACT-TCCTGAAGGAATAGGGAGC
1 GAAGATTGTTCGAGTTC-TATACTCT-CTGAAGGAATAGAGAGC
1082304 AGGCTCGTCA
Statistics
Matches: 322, Mismatches: 43, Indels: 12
0.85 0.11 0.03
Matches are distributed among these distances:
53 14 0.04
54 7 0.02
55 296 0.92
56 5 0.02
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (55 bp):
GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTAT
Found at i:1085625 original size:21 final size:21
Alignment explanation
Indices: 1085592--1085636 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1085582 AGTTTTGGAA
* *
1085592 AAAATTGAAAGTTTAGGTACT
1 AAAACTGAAAGTTTAGATACT
* *
1085613 AAAACTGATAGTTTATATACT
1 AAAACTGAAAGTTTAGATACT
1085634 AAA
1 AAA
1085637 TGAGTTAAGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.47, C:0.07, G:0.13, T:0.33
Consensus pattern (21 bp):
AAAACTGAAAGTTTAGATACT
Found at i:1088433 original size:6 final size:6
Alignment explanation
Indices: 1088419--1088460 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
1088409 CCTCCTCCCT
*
1088419 CCCTCC CCCTTC CCCTTC CCCTTC CCCTT- --CTTC CCCTTC CCC
1 CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCC
1088461 AAGAAATAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
3 3 0.09
6 29 0.91
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (6 bp):
CCCTTC
Found at i:1118109 original size:105 final size:105
Alignment explanation
Indices: 1117802--1119102 Score: 2112
Period size: 105 Copynumber: 12.4 Consensus size: 105
1117792 AATATCCACG
* * * * *
1117802 ATTTCAAATTCACAACGGAGGATATCGGGTCGCTCTAGACAACGCAAGTTCAACTTCACGACGAA
1 ATTTCAACTTCACAACGAAGGATAT-TGG--ACTCCAGACAACGCAAGTTCAACTTCACGACGAA
*
1117867 GGGACCGCTGGTTGTCAA-TAACATTTCTCAATTTCAGAGCCA
63 GGGACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCA
* * *
1117909 ATTTCAACTTCTCAACGAAGGATCTT-GACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
1117973 ACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCA
66 ACCGCTGGTTGTCAACAAAC-ATTTCTCAATTTCAGAGCCA
*
1118014 ATTTTAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
1118079 ATCGCTGGTTGTCAATAAACAATTTC-CAATTTCAGAGCCA
66 ACCGCTGGTTGTCAACAAAC-ATTTCTCAATTTCAGAGCCA
1118119 ATTTCAACTTCACAACGAAGGATATTGGACT-CAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
1118183 ACCGCTGGTTGTCAACAAACATTTCTCGATTTCAGAGTCA
66 ACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCA
*
1118223 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1118288 ACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCA
66 ACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCA
* *
1118328 ATTTCAACTTCACCACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * * *
1118393 ACCGCTGGTTGTCAATAAATATTTCTCGATTTCAGAGTCA
66 ACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCA
*
1118433 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTC-CGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1118497 ACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCA
66 ACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCA
* *
1118537 ATTTCAACTTCACCACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
1118602 ACCGCTGGTTGTCCATAAACATTTCTCAA-TTCAGAG-CA
66 ACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCA
* * *
1118640 GTTTCAACTTCTCAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
1118705 ACCGCTGGTTGTCAACAAACATCTCTCAATTTTAGAGCCA
66 ACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCA
*
1118745 ATTTCAACTTCACAATGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
1118810 ACCGCTGGTTGTCAACAAACATCTCTCAATTTCAGAGCCA
66 ACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCA
1118850 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
1118915 ACCGCTGGTTGTCAACAAACATTTCTCGATTTCAGAGTCA
66 ACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCA
*
1118955 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
1119020 ACCGTTGGTTCTCAACAAACATTTCTCAATTTCAGAGCCA
66 ACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCA
* * * *
1119060 ATTTCAACTTCACAGCGAAGGATATTGGCCTCAAAACAACGCA
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
1119103 GCTTGCATTG
Statistics
Matches: 1118, Mismatches: 68, Indels: 18
0.93 0.06 0.01
Matches are distributed among these distances:
103 144 0.13
104 207 0.19
105 684 0.61
106 62 0.06
107 21 0.02
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (105 bp):
ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
ACCGCTGGTTGTCAACAAACATTTCTCAATTTCAGAGCCA
Found at i:1118826 original size:522 final size:524
Alignment explanation
Indices: 1117802--1119087 Score: 2154
Period size: 522 Copynumber: 2.5 Consensus size: 524
1117792 AATATCCACG
* * * * *
1117802 ATTTCAAATTCACAACGGAGGATATCGGGTCGCTCTAGACAACGCAAGTTCAACTTCACGACGAA
1 ATTTCAACTTCACAACGAAGGATAT-TGG--ACTCCAGACAACGCAAGTTCAACTTCACGACGAA
* * *
1117867 GGGACCGCTGGTTGTCAAT-AACATTTCTCAATTTCAGAGCCAATTTCAACTTCTCAACGAAGGA
63 GGGACCGCTGGTTGTCAATAAACATTTCTCGATTTCAGAGTCAATTTCAACTTCACAACGAAGGA
* * * *
1117931 TCTT-GACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAA
128 TATTGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAAC-A
* * * *
1117995 TTTCCCAATTTCAGAGCCAATTTTAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGT
192 TTTCTCAATTTCAGAGCCAATTTCAACTTCACCACGAAGGATATTGGACTCCAGACAACACAAGT
*
1118060 TCAACTTCACGACGAAGGGATCGCTGGTTGTCAATAAACAATTTCCAATTTCAGAGCCAATTTCA
257 TCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCAATTTCAGAGCCAATTTCA
1118125 ACTTCACAACGAAGGATATTGGACTCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTG
322 ACTTCACAACGAAGGATATTGGACTCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTG
* * *
1118190 GTTGTCAACAAACATTTCTCGATTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTC
387 GTTGTCAACAAACATCTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
* *
1118255 CAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
452 CAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATCTCTCAATTT
1118320 CAGAGCCA
517 CAGAGCCA
* *
1118328 ATTTCAACTTCACCACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
1118393 ACCGCTGGTTGTCAATAAATATTTCTCGATTTCAGAGTCAATTTCAACTTCACAACGAAGGATAT
66 ACCGCTGGTTGTCAATAAACATTTCTCGATTTCAGAGTCAATTTCAACTTCACAACGAAGGATAT
1118458 TGGACTCCAGACAACGTAAGTTCAACTTC-CGACGAAGGGACCGCTGGTTGTCAACAAACATTTC
131 TGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTTC
1118522 TCAATTTCAGAGCCAATTTCAACTTCACCACGAAGGATATTGGACTCCAGACAACACAAGTTCAA
196 TCAATTTCAGAGCCAATTTCAACTTCACCACGAAGGATATTGGACTCCAGACAACACAAGTTCAA
* *
1118587 CTTCACGACGAAGGGACCGCTGGTTGTCCATAAAC-ATTTCTCAA-TTCAGAG-CAGTTTCAACT
261 CTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTC-CAATTTCAGAGCCAATTTCAACT
* *
1118649 TCTCAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGT
325 TCACAACGAAGGATATTGGACT-CAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
* *
1118714 TGTCAACAAACATCTCTCAATTTTAGAGCCAATTTCAACTTCACAATGAAGGATATTGGACTCCA
389 TGTCAACAAACATCTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
1118779 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATCTCTCAATTTCA
454 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATCTCTCAATTTCA
1118844 GAGCCA
519 GAGCCA
1118850 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
1118915 ACCGCTGGTTGTCAACAAACATTTCTCGATTTCAGAGTCAATTTCAACTTCACAACGAAGGATAT
66 ACCGCTGGTTGTCAATAAACATTTCTCGATTTCAGAGTCAATTTCAACTTCACAACGAAGGATAT
* *
1118980 TGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGTTGGTTCTCAACAAACATTTC
131 TGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTTC
1119045 TCAATTTCAGAGCCAATTTCAACTTCA-CAGCGAAGGATATTGG
196 TCAATTTCAGAGCCAATTTCAACTTCACCA-CGAAGGATATTGG
1119088 CCTCAAAACA
Statistics
Matches: 717, Mismatches: 37, Indels: 15
0.93 0.05 0.02
Matches are distributed among these distances:
521 31 0.04
522 339 0.47
523 225 0.31
524 73 0.10
525 27 0.04
526 22 0.03
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (524 bp):
ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
ACCGCTGGTTGTCAATAAACATTTCTCGATTTCAGAGTCAATTTCAACTTCACAACGAAGGATAT
TGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTTC
TCAATTTCAGAGCCAATTTCAACTTCACCACGAAGGATATTGGACTCCAGACAACACAAGTTCAA
CTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCAATTTCAGAGCCAATTTCAACTT
CACAACGAAGGATATTGGACTCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTG
TCAACAAACATCTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATCTCTCAATTTCAGA
GCCA
Found at i:1122007 original size:7 final size:7
Alignment explanation
Indices: 1121995--1122021 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
1121985 TACAATTTTT
1121995 ATTTAAA
1 ATTTAAA
1122002 ATTTAAA
1 ATTTAAA
1122009 ATTTAAA
1 ATTTAAA
1122016 ATTTAA
1 ATTTAA
1122022 TATATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
ATTTAAA
Found at i:1126766 original size:15 final size:15
Alignment explanation
Indices: 1126726--1126769 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
1126716 GTTGGATAAA
*
1126726 TTTAATAATT-AATT
1 TTTAATAATTAAAAT
**
1126740 TTTAATTTTTAAAAT
1 TTTAATAATTAAAAT
1126755 TTTAATAATTAAAAT
1 TTTAATAATTAAAAT
1126770 AAGACTTAAG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTAATAATTAAAAT
Found at i:1131402 original size:29 final size:29
Alignment explanation
Indices: 1131369--1131456 Score: 167
Period size: 29 Copynumber: 3.0 Consensus size: 29
1131359 TATGTTTATA
*
1131369 TAATATGTGCACTTCAAGCTGAATTCAAC
1 TAATATGTGCACTTGAAGCTGAATTCAAC
1131398 TAATATGTGCACTTGAAGCTGAATTCAAC
1 TAATATGTGCACTTGAAGCTGAATTCAAC
1131427 TAATATGTGCACTTGAAGCTGAATTCAAC
1 TAATATGTGCACTTGAAGCTGAATTCAAC
1131456 T
1 T
1131457 TTTAGAATCG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (29 bp):
TAATATGTGCACTTGAAGCTGAATTCAAC
Found at i:1133821 original size:42 final size:43
Alignment explanation
Indices: 1133774--1133858 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 43
1133764 CAATCGTAAC
*
1133774 AAACAGTTGAACAAATAATTGACATATTTG-AAAAAAACTCAA
1 AAACAGTAGAACAAATAATTGACATATTTGAAAAAAAACTCAA
*
1133816 AAACAGTAGAACAAATAGTTGACATATTTGAAAAAAAACTCAA
1 AAACAGTAGAACAAATAATTGACATATTTGAAAAAAAACTCAA
1133859 GCTTTGAAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 28 0.70
43 12 0.30
ACGTcount: A:0.55, C:0.12, G:0.11, T:0.22
Consensus pattern (43 bp):
AAACAGTAGAACAAATAATTGACATATTTGAAAAAAAACTCAA
Found at i:1135698 original size:3 final size:3
Alignment explanation
Indices: 1135690--1135732 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
1135680 AGGATAAATG
*
1135690 TCT TCT TCT TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1135733 TTTTTCTTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TCT
Found at i:1137252 original size:22 final size:21
Alignment explanation
Indices: 1137225--1137273 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
1137215 CCCCCAAATC
*
1137225 TAAAAATCTCAAATTCCAAACCT
1 TAAAACTCT-AAA-TCCAAACCT
1137248 TAAAACTCTAAATCCTAAACCT
1 TAAAACTCTAAATCC-AAACCT
1137270 TAAA
1 TAAA
1137274 CCCTAAACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 3 0.12
22 13 0.54
23 8 0.33
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (21 bp):
TAAAACTCTAAATCCAAACCT
Found at i:1137273 original size:7 final size:7
Alignment explanation
Indices: 1137242--1137294 Score: 54
Period size: 7 Copynumber: 7.4 Consensus size: 7
1137232 CTCAAATTCC
1137242 AAACCTT
1 AAACCTT
*
1137249 AAAACTCT
1 AAACCT-T
1137257 AAATCC-T
1 AAA-CCTT
1137264 AAACCTT
1 AAACCTT
*
1137271 AAACCCT
1 AAACCTT
1137278 AAACCTT
1 AAACCTT
*
1137285 AAACCCT
1 AAACCTT
1137292 AAA
1 AAA
1137295 TCCTAAACTC
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
6 2 0.05
7 31 0.82
8 4 0.11
9 1 0.03
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (7 bp):
AAACCTT
Found at i:1137273 original size:14 final size:14
Alignment explanation
Indices: 1137242--1137310 Score: 77
Period size: 14 Copynumber: 4.9 Consensus size: 14
1137232 CTCAAATTCC
* *
1137242 AAACCTTAAAACTCT
1 AAACCCTAAACCT-T
*
1137257 AAATCCTAAACCTT
1 AAACCCTAAACCTT
1137271 AAACCCTAAACCTT
1 AAACCCTAAACCTT
1137285 AAACCCTAAATCC-T
1 AAACCCTAAA-CCTT
*
1137299 AAACTCTAAACC
1 AAACCCTAAACC
1137311 CCAAATTCTA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
13 2 0.04
14 34 0.71
15 12 0.25
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.23
Consensus pattern (14 bp):
AAACCCTAAACCTT
Found at i:1137279 original size:21 final size:20
Alignment explanation
Indices: 1137255--1137355 Score: 78
Period size: 21 Copynumber: 4.8 Consensus size: 20
1137245 CCTTAAAACT
* *
1137255 CTAAATCCTAAACCTTAAACC
1 CTAAA-CCTAAACCCTAAATC
1137276 CTAAACCTTAAACCCTAAATC
1 CTAAACC-TAAACCCTAAATC
* *
1137297 CTAAACTCTAAACCCCAAATT
1 CTAAAC-CTAAACCCTAAATC
* ** *
1137318 CTAAATCTTAAACTTTAATTC
1 CTAAA-CCTAAACCCTAAATC
1137339 CTAAACTCT-AACCCTAA
1 CTAAAC-CTAAACCCTAA
1137356 TAAGAAAAGT
Statistics
Matches: 63, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
20 9 0.14
21 52 0.83
22 2 0.03
ACGTcount: A:0.42, C:0.31, G:0.00, T:0.28
Consensus pattern (20 bp):
CTAAACCTAAACCCTAAATC
Found at i:1137566 original size:27 final size:25
Alignment explanation
Indices: 1137536--1137620 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 25
1137526 TTACATTCAT
1137536 AATATTTTATATATATTAACTTTAGTA
1 AATATTTT-TATATATTAACTTTA-TA
1137563 AATA-TTTT-TATATTAAC-TTATTA
1 AATATTTTTATATATTAACTTTA-TA
*
1137586 AATATATTTTATTAAACTTAA-TTTATA
1 AATAT-TTTTA-TATA-TTAACTTTATA
1137613 AATATTTT
1 AATATTTT
1137621 ATTTTTATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
23 9 0.18
24 9 0.18
25 5 0.10
26 6 0.12
27 14 0.28
28 7 0.14
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.54
Consensus pattern (25 bp):
AATATTTTTATATATTAACTTTATA
Found at i:1137578 original size:24 final size:24
Alignment explanation
Indices: 1137547--1137605 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 24
1137537 ATATTTTATA
1137547 TATATTAACTTTAGTAAATAT-TTT
1 TATATTAAC-TTAGTAAATATATTT
*
1137571 TATATTAACTTATTAAATATATTT
1 TATATTAACTTAGTAAATATATTT
*
1137595 TAT-TAAACTTA
1 TATATTAACTTA
1137606 ATTTATAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 17 0.53
24 15 0.47
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.53
Consensus pattern (24 bp):
TATATTAACTTAGTAAATATATTT
Found at i:1137603 original size:23 final size:25
Alignment explanation
Indices: 1137561--1137623 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 25
1137551 TTAACTTTAG
*
1137561 TAAATAT-TTTTATATTAACTT-A-T
1 TAAATATATTTTAT-TAAACTTAATT
1137584 TAAATATATTTTATTAAACTTAATT
1 TAAATATATTTTATTAAACTTAATT
1137609 TATAA-ATATTTTATT
1 TA-AATATATTTTATT
1137624 TTTATTTATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
23 13 0.37
24 7 0.20
25 13 0.37
26 2 0.06
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (25 bp):
TAAATATATTTTATTAAACTTAATT
Found at i:1137641 original size:50 final size:52
Alignment explanation
Indices: 1137537--1137647 Score: 131
Period size: 50 Copynumber: 2.2 Consensus size: 52
1137527 TACATTCATA
* *
1137537 ATATTTTATATATATTAACTTTAGTAAATATTTTTATATTAACTTATTAAAT
1 ATATTTTATATAAATTAACTTTAGTAAATATTTTTATATTAACTTATAAAAT
* * *
1137589 ATATTTTAT-TAAACTTAA-TTTA-TAAATA-TTTTATTTTTATTTATAAATAT
1 ATATTTTATATAAA-TTAACTTTAGTAAATATTTTTATATTAACTTATAAA-AT
1137639 ATATTTTAT
1 ATATTTTAT
1137648 GTTAAGATGA
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
49 15 0.29
50 17 0.33
51 7 0.13
52 13 0.25
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.57
Consensus pattern (52 bp):
ATATTTTATATAAATTAACTTTAGTAAATATTTTTATATTAACTTATAAAAT
Found at i:1141168 original size:118 final size:121
Alignment explanation
Indices: 1140901--1141188 Score: 361
Period size: 118 Copynumber: 2.4 Consensus size: 121
1140891 ATTTGTTTTG
* * * * *
1140901 AAAG-TTATGTATTAAAACAGACCAAAACTGATAGTTTAGGTACTAAATATGTCGAGTTTTGAAA
1 AAAGTTTATGTACTAAAACAGACCAAAATTGATAGTTTATGTACTAAACATGTCAAGTTTTGAAA
* * *
1140965 TGTGAGTTACTAAAATGAAATAAAAACTAAACGTTAGGTATGGTTTTAAAAAAAATTA
66 GGTGAGGTACTAAAATGAAACAAAAACTAAAC--TAGGTATGGTTTTAAAAAAAATTA
* * * *
1141023 AAAGTTTAGGTACTAAAACGGACCAAAATTGATAGTTTATGTACTAAACGTGAT-AAGTTTTTAA
1 AAAGTTTATGTACTAAAACAGACCAAAATTGATAGTTTATGTACTAAACATG-TCAAGTTTTGAA
* *
1141087 AGGTG-GGTACTAAAATGAAACAAAAACTAAAC-ATGTATGGTTTT-GAAAAAATTA
65 AGGTGAGGTACTAAAATGAAACAAAAACTAAACTAGGTATGGTTTTAAAAAAAATTA
* * *
1141141 AAAGTTTATGTACTAAAACATATCAAAATTGATAGTTTATGTATTAAA
1 AAAGTTTATGTACTAAAACAGACCAAAATTGATAGTTTATGTACTAAA
1141189 TGCGTAGTTT
Statistics
Matches: 145, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
118 52 0.36
119 11 0.08
122 29 0.20
123 52 0.36
124 1 0.01
ACGTcount: A:0.45, C:0.08, G:0.16, T:0.32
Consensus pattern (121 bp):
AAAGTTTATGTACTAAAACAGACCAAAATTGATAGTTTATGTACTAAACATGTCAAGTTTTGAAA
GGTGAGGTACTAAAATGAAACAAAAACTAAACTAGGTATGGTTTTAAAAAAAATTA
Found at i:1141759 original size:15 final size:17
Alignment explanation
Indices: 1141734--1141765 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
1141724 AGTGATAATA
1141734 AAATAATTTTT-ATCTT
1 AAATAATTTTTAATCTT
1141750 AAAT-ATTTTTAATCTT
1 AAATAATTTTTAATCTT
1141766 TTGACAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
AAATAATTTTTAATCTT
Found at i:1144001 original size:19 final size:19
Alignment explanation
Indices: 1143977--1144013 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1143967 CTGCAAGAGA
*
1143977 AAGAAGGATTAGAAAAAAC
1 AAGAAGGAATAGAAAAAAC
*
1143996 AAGAAGGAATCGAAAAAA
1 AAGAAGGAATAGAAAAAA
1144014 AAGGAGCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.05, G:0.22, T:0.08
Consensus pattern (19 bp):
AAGAAGGAATAGAAAAAAC
Found at i:1146411 original size:16 final size:17
Alignment explanation
Indices: 1146380--1146413 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1146370 AAATATTATT
*
1146380 TTATTATTTATTTTAAA
1 TTATTATTTATATTAAA
1146397 TTATT-TTTATATTAAA
1 TTATTATTTATATTAAA
1146413 T
1 T
1146414 AATAATAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATTTATATTAAA
Found at i:1149024 original size:2 final size:2
Alignment explanation
Indices: 1149017--1149050 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1149007 TATGGTTTAA
1149017 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1149051 TATTTGTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1162055 original size:16 final size:17
Alignment explanation
Indices: 1162017--1162064 Score: 71
Period size: 18 Copynumber: 2.8 Consensus size: 17
1162007 TGTTTATGAG
1162017 GGAATTGGAATCTGTGAA
1 GGAATTGGAATCTGT-AA
1162035 GGAATTGGAATCTGT-A
1 GGAATTGGAATCTGTAA
*
1162051 GGAATTAGAATCTG
1 GGAATTGGAATCTG
1162065 AATCTGAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 14 0.48
18 15 0.52
ACGTcount: A:0.33, C:0.06, G:0.31, T:0.29
Consensus pattern (17 bp):
GGAATTGGAATCTGTAA
Found at i:1168361 original size:39 final size:39
Alignment explanation
Indices: 1168280--1168362 Score: 100
Period size: 37 Copynumber: 2.2 Consensus size: 39
1168270 TTTTTTATAT
*
1168280 TTTTAA-TTTTGTAAAAAAAATTATATAAATATTATGAA
1 TTTTAATTTTTGTAAAAAAAATTATATAAATATTATCAA
* * *
1168318 -TTTAATTTTTTTTAAAAAAA-TATATAAATATTTTACAA
1 TTTTAATTTTTGTAAAAAAAATTATATAAATATTAT-CAA
1168356 TTTTAAT
1 TTTTAAT
1168363 ATTATACAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
37 18 0.47
38 14 0.37
39 6 0.16
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (39 bp):
TTTTAATTTTTGTAAAAAAAATTATATAAATATTATCAA
Found at i:1168540 original size:20 final size:20
Alignment explanation
Indices: 1168504--1168541 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1168494 ATCGTATTCC
**
1168504 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
1168524 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
1168542 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:1172134 original size:60 final size:60
Alignment explanation
Indices: 1172061--1172226 Score: 183
Period size: 60 Copynumber: 2.8 Consensus size: 60
1172051 ATAGGCTTAG
* * * * *
1172061 TCCTCATTCTGACATATGTATGGAATTAATTCCCCATTCTAACATCTACAATGGATTAAC
1 TCCTCGTTCTGACATATGCATGGAATTAATTCCCCATTCTGACATCTACAAGGGATGAAC
* * ** * * *
1172121 TCCTCGTTCTGACATTTGCATGGGATTAATTATCCATTTTGACATCTGCAAGGGATGAAT
1 TCCTCGTTCTGACATATGCATGGAATTAATTCCCCATTCTGACATCTACAAGGGATGAAC
* *
1172181 TCC-CGTTATGACATATGCAT-GAGATTAATTCCCCGTTCTGACATCT
1 TCCTCGTTCTGACATATGCATGGA-ATTAATTCCCCATTCTGACATCT
1172227 GTATGGGATT
Statistics
Matches: 86, Mismatches: 19, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
58 1 0.01
59 34 0.40
60 51 0.59
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (60 bp):
TCCTCGTTCTGACATATGCATGGAATTAATTCCCCATTCTGACATCTACAAGGGATGAAC
Found at i:1172253 original size:30 final size:29
Alignment explanation
Indices: 1172067--1172260 Score: 156
Period size: 30 Copynumber: 6.5 Consensus size: 29
1172057 TTAGTCCTCA
* * * *
1172067 TTCTGACATATGTATGGAATTAATTCCCCA
1 TTCTGACATCTGCATGGGATTAATT-CCCG
* * *
1172097 TTCTAACATCTACAAT-GGATTAACTCCTCG
1 TTCTGACATCTGC-ATGGGATTAATTCC-CG
* * *
1172127 TTCTGACATTTGCATGGGATTAATTATCCA
1 TTCTGACATCTGCATGGGATTAATT-CCCG
* * *
1172157 TTTTGACATCTGCAAGGGATGAATTCCCG
1 TTCTGACATCTGCATGGGATTAATTCCCG
* * *
1172186 TTATGACATATGCATGAGATTAATTCCCCG
1 TTCTGACATCTGCATGGGATTAATT-CCCG
*
1172216 TTCTGACATCTGTATGGGATTAATTCCCTG
1 TTCTGACATCTGCATGGGATTAATTCCC-G
* *
1172246 TTTTGACATCCGCAT
1 TTCTGACATCTGCAT
1172261 AAGATTATAT
Statistics
Matches: 127, Mismatches: 31, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
29 29 0.23
30 95 0.75
31 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.36
Consensus pattern (29 bp):
TTCTGACATCTGCATGGGATTAATTCCCG
Found at i:1175114 original size:23 final size:23
Alignment explanation
Indices: 1175076--1175128 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
1175066 ACTTGTTAAT
* *
1175076 TTTGATCAACCTGACCCTTTGAC
1 TTTGATCAACCCGACCCGTTGAC
*
1175099 TTTGATCGACCCGACCCGTTGAC
1 TTTGATCAACCCGACCCGTTGAC
1175122 TTTGATC
1 TTTGATC
1175129 TACACGATCC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.34
Consensus pattern (23 bp):
TTTGATCAACCCGACCCGTTGAC
Found at i:1175727 original size:30 final size:30
Alignment explanation
Indices: 1175690--1175905 Score: 229
Period size: 30 Copynumber: 7.0 Consensus size: 30
1175680 ATGGGCTTAG
* * *
1175690 TCCCCGTTATGATATCTGTATGGGATTAAT
1 TCCCCGTTCTGACATCTGCATGGGATTAAT
* *
1175720 TTCCCGTTCTGACATCTGCAAGGGATTAAT
1 TCCCCGTTCTGACATCTGCATGGGATTAAT
*
1175750 TCCTCGTTCTGACATCTGCATGGGATTAAT
1 TCCCCGTTCTGACATCTGCATGGGATTAAT
* * **
1175780 TCCCCATTCTGACATCTGTATAAGATTAAT
1 TCCCCGTTCTGACATCTGCATGGGATTAAT
*
1175810 TCCCCGTTCTGATCTTACATCTACATGGGATTAATT
1 TCCCCGTTCTG-----ACATCTGCATGGGATTAA-T
*
1175846 TCCCC-TTCTGACATCTGCAAGGGATT-AT
1 TCCCCGTTCTGACATCTGCATGGGATTAAT
* *
1175874 TCCCCCATTTTGACATCTGCATGGGATTAAT
1 T-CCCCGTTCTGACATCTGCATGGGATTAAT
1175905 T
1 T
1175906 ATCAGTTTTG
Statistics
Matches: 155, Mismatches: 22, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
28 2 0.01
29 5 0.03
30 120 0.77
31 3 0.02
35 19 0.12
36 6 0.04
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (30 bp):
TCCCCGTTCTGACATCTGCATGGGATTAAT
Found at i:1176875 original size:15 final size:16
Alignment explanation
Indices: 1176855--1176889 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
1176845 ACATCGTTTG
1176855 ATTG-TTAATGATTTA
1 ATTGTTTAATGATTTA
*
1176870 ATTGTTTAATGCTTTA
1 ATTGTTTAATGATTTA
1176886 ATTG
1 ATTG
1176890 AACCCTAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.29, C:0.03, G:0.14, T:0.54
Consensus pattern (16 bp):
ATTGTTTAATGATTTA
Found at i:1177241 original size:15 final size:16
Alignment explanation
Indices: 1177213--1177246 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
1177203 ATCTCAAATT
*
1177213 AATTTTTTGTGCTAAA
1 AATTTTTTGCGCTAAA
1177229 AATTTTTT-CGCTAAA
1 AATTTTTTGCGCTAAA
1177244 AAT
1 AAT
1177247 AGCTGCTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (16 bp):
AATTTTTTGCGCTAAA
Found at i:1181525 original size:19 final size:19
Alignment explanation
Indices: 1181501--1181538 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
1181491 ATTGGAATCA
1181501 AATATTAAAATATTGATTT
1 AATATTAAAATATTGATTT
*
1181520 AATATTGAAATATTGATTT
1 AATATTAAAATATTGATTT
1181539 TGGACTAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (19 bp):
AATATTAAAATATTGATTT
Found at i:1182908 original size:16 final size:17
Alignment explanation
Indices: 1182876--1182911 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
1182866 AAAACAAAAA
1182876 TAAAAGATATAGAATAG
1 TAAAAGATATAGAATAG
*
1182893 TAAAAG-TATAGTATAG
1 TAAAAGATATAGAATAG
1182909 TAA
1 TAA
1182912 GAGAAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.56, C:0.00, G:0.17, T:0.28
Consensus pattern (17 bp):
TAAAAGATATAGAATAG
Found at i:1182933 original size:17 final size:17
Alignment explanation
Indices: 1182874--1182973 Score: 53
Period size: 17 Copynumber: 5.9 Consensus size: 17
1182864 ATAAAACAAA
*
1182874 AATAAAAGATATAGA-AT
1 AATAAAAGAAATA-ATAT
* * *
1182891 AGTAAAAG-TATAGTAT
1 AATAAAAGAAATAATAT
* *
1182907 AGTAAGAGAAATAATAT
1 AATAAAAGAAATAATAT
* *
1182924 AATAAAAGAAATTATAC
1 AATAAAAGAAATAATAT
* * *
1182941 AGT-AAAGAAATCATCAC
1 AATAAAAGAAATAAT-AT
*
1182958 AATAAAAGAAACAATA
1 AATAAAAGAAATAATA
1182974 CTGTGAAAGG
Statistics
Matches: 65, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
16 23 0.35
17 33 0.51
18 9 0.14
ACGTcount: A:0.61, C:0.05, G:0.12, T:0.22
Consensus pattern (17 bp):
AATAAAAGAAATAATAT
Found at i:1192526 original size:24 final size:24
Alignment explanation
Indices: 1192494--1192542 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
1192484 AGTCTTTCCG
1192494 ATGATGTATAAAACATCTATGTAC
1 ATGATGTATAAAACATCTATGTAC
*
1192518 ATGATGTATAAAACATTTATGTAC
1 ATGATGTATAAAACATCTATGTAC
1192542 A
1 A
1192543 ATGTCATGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35
Consensus pattern (24 bp):
ATGATGTATAAAACATCTATGTAC
Found at i:1193784 original size:30 final size:30
Alignment explanation
Indices: 1193737--1193818 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 30
1193727 CATTTGTAAT
*
1193737 TTTTTAAAA-TTACACTTTGATC-CCTAAAC
1 TTTTTAAAATTTATACTTTGATCACC-AAAC
*
1193766 TTTTTAAAATTTATACTTTGGTCACCAAAC
1 TTTTTAAAATTTATACTTTGATCACCAAAC
*** *
1193796 TTTACCAAATTTATAATTTGATC
1 TTTTTAAAATTTATACTTTGATC
1193819 GTTAAATAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 9 0.20
30 33 0.75
31 2 0.05
ACGTcount: A:0.34, C:0.17, G:0.05, T:0.44
Consensus pattern (30 bp):
TTTTTAAAATTTATACTTTGATCACCAAAC
Found at i:1196129 original size:54 final size:54
Alignment explanation
Indices: 1196063--1196166 Score: 181
Period size: 54 Copynumber: 1.9 Consensus size: 54
1196053 TAACGGGAGA
* *
1196063 TAACGTCAAGGACCTTACTGAAAATGAACTAAAAGTTTGATAACTGTATTGAGG
1 TAACGTCAAGGACCTTACTGAAAATGAAATAAAAGTTCGATAACTGTATTGAGG
*
1196117 TAACGTCAAGGACCTTACTGAAAATGAAATAAAAGTTCGATAATTGTATT
1 TAACGTCAAGGACCTTACTGAAAATGAAATAAAAGTTCGATAACTGTATT
1196167 ATAAATTTCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.29
Consensus pattern (54 bp):
TAACGTCAAGGACCTTACTGAAAATGAAATAAAAGTTCGATAACTGTATTGAGG
Found at i:1196409 original size:3 final size:3
Alignment explanation
Indices: 1196401--1196433 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
1196391 AGGACAAGTT
1196401 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1196434 GGATAGAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:1206728 original size:21 final size:21
Alignment explanation
Indices: 1206702--1206774 Score: 110
Period size: 21 Copynumber: 3.5 Consensus size: 21
1206692 GATTTACATA
*
1206702 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCCAAG
1206723 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
* *
1206744 TTCGCGTTGTGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
*
1206765 TTCGCGTTGC
1 TTCGCATTGC
1206775 AAATCTGGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCCAAG
Found at i:1216669 original size:29 final size:29
Alignment explanation
Indices: 1216615--1216670 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
1216605 TTGATGATAA
* *
1216615 GGAAGAAGAAACAATTGATTTTTTTAAGG
1 GGAAGAAGAAACAATTGAATTATTTAAGG
*
1216644 GGAAGAAGTAAA-AATTTAATTATTTAA
1 GGAAGAAG-AAACAATTGAATTATTTAA
1216671 AAAAATCAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 20 0.87
30 3 0.13
ACGTcount: A:0.46, C:0.02, G:0.20, T:0.32
Consensus pattern (29 bp):
GGAAGAAGAAACAATTGAATTATTTAAGG
Found at i:1218613 original size:352 final size:349
Alignment explanation
Indices: 1217970--1218654 Score: 1102
Period size: 352 Copynumber: 1.9 Consensus size: 349
1217960 TTAGACCTAA
*
1217970 ATTAATCTTAATCTGTTTTAGTACCTAAACTTTCAATTTTTTAAAATCAACTACGTTAGTTTTAT
1 ATTAATCTTAATCTGTTTTAGTACCTAAACTTTCAATTTTTTAAAATCAACTACGTTAGATTTAT
* *
1218035 TTTTTATTTTAATACAAATCTTAAAAACTTAACGTTAGTACTACTATCAAATTTCTCTGTTTTAA
66 TATTTATTTTAATA-AAATCTTAAAAACTTAACGTTAATACTACTATCAAATTTCTCTGTTTTAA
1218100 TACCTAACTTTATTTATTTTCAAAATTTAACATTAAATTTTAACAGAGTACTAAAATACAATAAA
130 TACCTAACTTTATTTATTTTCAAAATTTAACATTAAATTTTAACAGAGTACTAAAATACAAT-AA
* * *
1218165 AAACTAAAATCTTTAACGATATAATATCTCGAAAATTTAGCGTGTTTAGTACTTAAACACGTTAT
194 AAACTAAAATCTTTAACGATATAATATCCCGAAAACTTAACGTGTTTAGTACTTAAACACGTTAT
1218230 TTACCCTTAAATTTATCTTGAACGACAAAATAAGGATGAGTAGAGCGTAGAATATCCCAAAACCA
259 TTACCCTTAAATTTATCTTGAACGACAAAATAAGGATGAGTAGAGCGTAGAATATCCCAAAACCA
1218295 AAAATAAGTACATTTAGACCTAAATT
324 AAAATAAGTACATTTAGACCTAAATT
1218321 ATTAATCTTAATCTGTTTTAGTACCTAAACTTTCAATTTTTTAAAATCATACCTACGTTTA-ATT
1 ATTAATCTTAATCTGTTTTAGTACCTAAACTTTCAATTTTTTAAAATCA-A-CTACG-TTAGATT
1218385 T-TTATTTATTTT-AT-AAATCATTAAAAACTTAACGCGTTTAATACATAAAC-ATCAAATTTTC
63 TATTATTTATTTTAATAAAATC-TTAAAAACTTAA--CG-TTAATAC-T--ACTATCAAA-TTTC
*
1218446 TCTGTTTTAATATCTAAACTTTATTTATTTT-AAAA-TTAACATT-AATTTTAAACAGAGTACT-
120 TCTGTTTTAATACCT-AACTTTATTTATTTTCAAAATTTAACATTAAATTTT-AACAGAGTACTA
1218507 AAATACAAT-AAAACTAAAATCTTTAACGATATAATATCCCGAAAACTTAACGTGTTTAGTACTT
183 AAATACAATAAAAACTAAAATCTTTAACGATATAATATCCCGAAAACTTAACGTGTTTAGTACTT
1218571 AAACACGTTATTTACCCTTAAATTTATCTTGAACGACAAAATAAGGATGAGTAGAGCGTAGAATA
248 AAACACGTTATTTACCCTTAAATTTATCTTGAACGACAAAATAAGGATGAGTAGAGCGTAGAATA
1218636 TCCCAAAACCAAAAATAAG
313 TCCCAAAACCAAAAATAAG
1218655 ATTTTTGTGA
Statistics
Matches: 314, Mismatches: 7, Indels: 25
0.91 0.02 0.07
Matches are distributed among these distances:
349 5 0.02
350 12 0.04
351 51 0.16
352 149 0.47
353 14 0.04
354 19 0.06
355 25 0.08
356 24 0.08
357 15 0.05
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (349 bp):
ATTAATCTTAATCTGTTTTAGTACCTAAACTTTCAATTTTTTAAAATCAACTACGTTAGATTTAT
TATTTATTTTAATAAAATCTTAAAAACTTAACGTTAATACTACTATCAAATTTCTCTGTTTTAAT
ACCTAACTTTATTTATTTTCAAAATTTAACATTAAATTTTAACAGAGTACTAAAATACAATAAAA
ACTAAAATCTTTAACGATATAATATCCCGAAAACTTAACGTGTTTAGTACTTAAACACGTTATTT
ACCCTTAAATTTATCTTGAACGACAAAATAAGGATGAGTAGAGCGTAGAATATCCCAAAACCAAA
AATAAGTACATTTAGACCTAAATT
Done.