genome.fa.s5398.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005398.1 Hibiscus syriacus cultivar Beakdansim tig00012373_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88896

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5142--5240	51	1.9	51	85	0	135	49	14	21	15	1.79
6013--6680	106	6.4	106	84	4	849	34	21	19	24	1.96
5937--6532	305	2.0	294	86	4	834	35	21	19	24	1.96
6228--6670	210	2.1	211	90	1	683	32	21	20	24	1.97
7153--7224	35	2.1	35	97	0	135	38	11	20	29	1.87
7597--7635	16	2.3	18	83	16	57	25	5	2	66	1.25
7633--7711	2	40.5	2	75	18	51	37	2	1	58	1.20
7884--7946	22	2.8	22	72	18	58	26	3	0	69	1.03
7888--7947	21	2.9	21	78	11	70	26	3	0	70	1.03
16260--16297	18	2.2	18	86	9	53	21	5	21	52	1.66
24312--24576	101	2.6	102	86	1	370	30	17	13	38	1.88
24561--24595	17	2.1	17	94	0	61	17	20	22	40	1.92
24776--25130	118	3.0	118	86	4	486	36	15	20	26	1.93
25057--25120	17	3.3	19	67	20	51	45	12	18	23	1.84
25011--25418	163	2.5	163	86	3	545	35	16	20	26	1.94
27075--27110	14	2.6	14	90	0	54	27	8	2	61	1.39
32464--32551	26	3.4	25	73	18	81	43	3	0	53	1.17
32464--32552	25	3.4	27	79	16	91	42	3	0	53	1.17
32485--32573	27	3.4	25	80	7	81	40	4	0	55	1.20
32714--32777	31	2.1	31	90	0	101	54	9	7	28	1.60
33432--33487	16	3.5	16	95	0	103	46	26	17	8	1.78
33432--33552	32	3.8	32	81	2	118	46	24	15	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34688--34731	19	2.3	19	84	4	52	61	4	2	31	1.28
35699--35793	21	4.7	20	79	5	100	38	18	24	17	1.92
35696--35793	41	2.4	41	96	0	178	39	18	23	18	1.92
35716--35812	21	4.7	20	84	3	122	39	18	25	16	1.91
35798--35875	41	1.9	41	86	0	111	39	21	16	21	1.92
35801--35894	20	4.7	20	80	2	89	34	24	18	23	1.96
35699--35850	62	2.5	61	77	9	166	39	19	23	18	1.92
36410--36490	19	4.5	19	73	16	73	46	24	16	12	1.81
36486--36670	19	10.1	19	75	14	165	11	21	22	44	1.85
36486--36670	33	5.1	38	78	12	165	11	21	22	44	1.85
38703--38770	21	3.2	21	68	4	64	23	36	20	19	1.95
40097--40131	13	2.6	14	90	4	54	28	0	25	45	1.54
40313--40594	33	8.9	32	81	15	345	15	23	19	41	1.90
40309--40372	19	3.6	19	70	20	66	12	25	20	42	1.87
40308--40594	94	3.0	93	86	11	356	15	23	19	41	1.90
40306--40594	127	2.3	125	86	7	406	15	23	19	40	1.90
40567--40614	19	2.5	19	82	3	60	16	20	20	41	1.90
42860--42884	12	2.1	12	100	0	50	0	28	0	72	0.86
43055--43108	24	2.2	24	90	0	81	38	20	16	24	1.92
44142--44219	20	3.9	20	94	0	129	38	23	21	16	1.93
44237--44290	14	3.2	18	80	19	71	11	22	18	48	1.79
44237--44311	30	2.4	32	84	6	91	13	22	20	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46264--46330	19	3.5	19	83	4	89	37	23	23	14	1.93
46319--46376	14	3.9	14	79	16	71	48	25	17	8	1.75
46303--46381	32	2.4	33	95	2	142	46	24	18	10	1.80
46410--46467	14	3.9	14	77	16	62	10	17	24	48	1.78
46393--46483	32	2.8	33	89	3	148	12	16	21	49	1.78
46469--46511	20	2.2	20	87	4	61	18	23	20	37	1.94
46477--46522	20	2.3	20	88	0	65	15	21	26	36	1.93
46994--47038	18	2.5	18	85	0	63	15	15	42	26	1.87
48344--48381	20	1.9	20	88	0	58	50	21	15	13	1.78
49969--50028	29	2.2	29	80	11	74	43	5	5	46	1.47
50608--50645	16	2.3	17	86	4	51	44	2	5	47	1.39
50617--50676	14	3.8	16	77	16	54	50	1	3	45	1.28
50640--50698	19	3.2	19	85	2	66	49	0	1	49	1.11
50775--50823	19	2.6	19	83	3	55	51	0	0	48	1.00
51491--51548	26	2.3	25	80	11	64	68	0	3	27	1.05
51505--51549	20	2.4	20	78	10	51	71	0	2	26	0.98
52640--52675	16	2.1	16	90	10	54	30	0	0	69	0.89
53726--53777	5	9.8	5	80	12	59	75	1	7	15	1.12
54527--54647	32	3.7	32	84	9	147	52	3	15	28	1.59
55214--55257	12	3.7	12	81	0	52	47	25	2	25	1.63
55214--55257	18	2.4	18	80	0	52	47	25	2	25	1.63
56221--56323	52	2.0	52	100	0	206	33	11	15	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56421--56468	24	2.0	24	100	0	96	16	20	20	41	1.90
59166--59212	23	2.0	23	100	0	94	44	4	29	21	1.71
68453--68599	72	2.1	71	88	3	215	27	12	23	35	1.92
72775--72831	21	2.7	21	91	0	87	28	28	19	24	1.98
72871--72969	21	4.8	20	84	13	128	21	20	37	21	1.95
73049--73107	29	2.0	30	90	6	93	42	18	5	33	1.72
74370--74419	19	2.5	20	83	3	66	32	10	6	52	1.59
75181--75240	29	2.0	29	87	6	84	41	18	5	35	1.72
78892--78937	24	1.9	24	90	0	74	36	30	13	19	1.90
83390--83419	12	2.6	12	94	5	53	56	0	0	43	0.99
86325--86350	10	2.6	10	100	0	52	0	61	26	11	1.30
86345--86374	14	2.1	14	100	0	60	6	56	13	23	1.60
87315--87383	27	2.5	28	80	2	86	55	23	8	13	1.65

Tables:   1

The End!