Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005399.1 Hibiscus syriacus cultivar Beakdansim tig00012374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110401

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4446--4482
3
12.7
3
94
5
67
64
0
0
35
0.94
9593--9633
16
2.5
17
80
11
50
39
4
0
56
1.21
11651--11767
58
2.0
58
98
0
225
47
6
17
28
1.72
17016--17049
2
17.0
2
100
0
68
50
0
0
50
1.00
47039--47209
60
2.9
61
80
15
180
33
20
7
38
1.81
49364--49396
16
2.1
16
100
0
66
57
24
12
6
1.57
49762--49805
14
3.1
14
86
0
61
63
15
9
11
1.51
49764--49816
24
2.1
26
86
6
74
60
15
9
15
1.58
49812--49838
10
2.7
10
100
0
54
29
29
22
18
1.97
61341--61375
3
11.7
3
87
0
52
31
5
0
62
1.18
64717--64755
11
3.5
11
93
6
69
41
0
7
51
1.31
64718--64757
12
3.4
12
83
16
57
40
0
7
52
1.30
65079--65111
17
1.9
17
93
0
57
27
3
12
57
1.49
70069--70108
20
2.1
19
95
4
71
42
10
22
25
1.84
70072--70117
20
2.5
19
86
13
62
41
10
21
26
1.86
70260--70334
37
2.0
37
82
10
91
49
4
1
45
1.29
71711--71740
2
15.0
2
100
0
60
50
0
0
50
1.00
72743--72781
16
2.5
16
91
4
62
41
0
17
41
1.50
72835--72900
27
2.4
27
90
5
98
30
19
13
36
1.91
84928--84961
17
1.9
18
88
5
52
38
0
0
61
0.96
84925--84983
27
2.2
27
82
11
68
33
0
0
66
0.92
86659--86686
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95284--95327
21
2.1
21
91
0
70
38
2
0
59
1.10
108728--108767
20
2.0
21
90
5
64
55
10
5
30
1.54

Tables:   1

The End!