Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000054.1 Hibiscus syriacus cultivar Beakdansim tig00000081_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87951
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:2345 original size:31 final size:31
Alignment explanation
Indices: 2274--2332 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
2264 AGTTGTATGG
* *
2274 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGTATTGCAAAACTAAA
2305 ATTATTTAAATCTCAGTATTGCAAAACT
1 ATTATTTAAATCTCAGTATTGCAAAACT
2333 CTTTTAGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGCAAAACTAAA
Found at i:2470 original size:25 final size:21
Alignment explanation
Indices: 2424--2465 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
2414 ATTTATTCAG
2424 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
2445 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
2466 AAAATTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.52
Consensus pattern (21 bp):
TATGGATTGATTTATTTTAAA
Found at i:2966 original size:14 final size:14
Alignment explanation
Indices: 2927--2965 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
2917 TCTTTAAACA
2927 TCACAATTTTTTCTT
1 TCAC-ATTTTTTCTT
*
2942 TCCCATTTTTTCTT
1 TCACATTTTTTCTT
2956 TCAC-TTTTTT
1 TCACATTTTTT
2966 TTTGTTTGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 6 0.27
14 13 0.59
15 3 0.14
ACGTcount: A:0.13, C:0.23, G:0.00, T:0.64
Consensus pattern (14 bp):
TCACATTTTTTCTT
Found at i:9497 original size:32 final size:32
Alignment explanation
Indices: 9461--9561 Score: 114
Period size: 32 Copynumber: 3.2 Consensus size: 32
9451 TCCAAGGCAT
*
9461 TTCCTTGGGTAGGCTCTAAGGCCCCAATATAC
1 TTCCTTGGGTAGGCTCTAAGGCCCCAAAATAC
** * *
9493 TTCCTTATGTAGGCTCTTAGGCCCTAAAATAC
1 TTCCTTGGGTAGGCTCTAAGGCCCCAAAATAC
* * * *
9525 TCCCTTGGATAGGCTCTCAGGCCCCAAGATA-
1 TTCCTTGGGTAGGCTCTAAGGCCCCAAAATAC
9556 TTCCTT
1 TTCCTT
9562 TAGGTTGGCA
Statistics
Matches: 56, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
31 5 0.09
32 51 0.91
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.31
Consensus pattern (32 bp):
TTCCTTGGGTAGGCTCTAAGGCCCCAAAATAC
Found at i:15333 original size:29 final size:30
Alignment explanation
Indices: 15266--15342 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 30
15256 AAATTAACGG
* * *
15266 TCGGTGGTTTGATTAAATCAATTAAATAGT
1 TCGGTGGTCTGATTGATTCAATTAAATAGT
* *
15296 TGGGTGGTCTGATTGATTCAATTGAA-AGT
1 TCGGTGGTCTGATTGATTCAATTAAATAGT
**
15325 TCGGTGGTCACATTGATT
1 TCGGTGGTCTGATTGATT
15343 TTTGACCATA
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
29 18 0.46
30 21 0.54
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.39
Consensus pattern (30 bp):
TCGGTGGTCTGATTGATTCAATTAAATAGT
Found at i:18195 original size:16 final size:16
Alignment explanation
Indices: 18176--18207 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
18166 GGGCGACGAT
*
18176 TGTGGCAGCCGACGGC
1 TGTGGCAGCCAACGGC
18192 TGTGGCAGCCAACGGC
1 TGTGGCAGCCAACGGC
18208 AGCAGGATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.31, G:0.41, T:0.12
Consensus pattern (16 bp):
TGTGGCAGCCAACGGC
Found at i:18302 original size:18 final size:18
Alignment explanation
Indices: 18281--18335 Score: 58
Period size: 19 Copynumber: 3.0 Consensus size: 18
18271 AATTTTAGGG
18281 ATTTTTAAAAAATATAAT
1 ATTTTTAAAAAATATAAT
* *
18299 ATTTTTTAAAAAACAAAAT
1 A-TTTTTAAAAAATATAAT
*
18318 A-TTTTAACATAATATAAT
1 ATTTTTAA-AAAATATAAT
18336 CAATTAACGG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
17 6 0.20
18 8 0.27
19 16 0.53
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTTTTAAAAAATATAAT
Found at i:18304 original size:19 final size:19
Alignment explanation
Indices: 18282--18322 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
18272 ATTTTAGGGA
* *
18282 TTTTTAAAAAATATAATAT
1 TTTTTAAAAAACAAAATAT
18301 TTTTTAAAAAACAAAATAT
1 TTTTTAAAAAACAAAATAT
18320 TTT
1 TTT
18323 AACATAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTTTAAAAAACAAAATAT
Found at i:20056 original size:19 final size:17
Alignment explanation
Indices: 20024--20058 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
20014 ACCTAATACT
20024 AATTTAAATTTAAATTC
1 AATTTAAATTTAAATTC
20041 AATTTAAAAGTTTAAATT
1 AATTT-AAA-TTTAAATT
20059 GATTAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 3 0.19
19 8 0.50
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (17 bp):
AATTTAAATTTAAATTC
Found at i:20421 original size:15 final size:14
Alignment explanation
Indices: 20396--20432 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 14
20386 AACTGATGAC
20396 TTAAAAACATAAAA
1 TTAAAAACATAAAA
20410 TTAAACAACATAAAA
1 TTAAA-AACATAAAA
20425 TATAAAAA
1 T-TAAAAA
20433 TATATATGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 5 0.24
15 12 0.57
16 4 0.19
ACGTcount: A:0.70, C:0.08, G:0.00, T:0.22
Consensus pattern (14 bp):
TTAAAAACATAAAA
Found at i:22344 original size:26 final size:27
Alignment explanation
Indices: 22315--22373 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
22305 TAATTCTTAT
22315 AATTTAGGGTT-TAATTTAAAATTTAA
1 AATTTAGGGTTATAATTTAAAATTTAA
* * *
22341 AATTTAGGGTTATGATTTTAAATTTTA
1 AATTTAGGGTTATAATTTAAAATTTAA
22368 AATTTA
1 AATTTA
22374 TGATTAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 11 0.38
27 18 0.62
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (27 bp):
AATTTAGGGTTATAATTTAAAATTTAA
Found at i:22370 original size:27 final size:26
Alignment explanation
Indices: 22302--22373 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 26
22292 TGTGTTCAGG
22302 TTTT-AATTCTTATAATTTAGGGTTTAA
1 TTTTAAATT-TTA-AATTTAGGGTTTAA
* * *
22329 TTTAAAATTTAAAATTTAGGGTTATGA
1 TTTTAAATTTTAAATTTAGGGTT-TAA
22356 TTTTAAATTTTAAATTTA
1 TTTTAAATTTTAAATTTA
22374 TGATTAAAGT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
26 11 0.29
27 23 0.61
28 4 0.11
ACGTcount: A:0.36, C:0.01, G:0.10, T:0.53
Consensus pattern (26 bp):
TTTTAAATTTTAAATTTAGGGTTTAA
Found at i:22613 original size:4 final size:4
Alignment explanation
Indices: 22604--22631 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
22594 GTTGGGACAT
22604 GAGG GAGG GAGG GAGG GAGG GAGG GAGG
1 GAGG GAGG GAGG GAGG GAGG GAGG GAGG
22632 AGAAAAGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.75, T:0.00
Consensus pattern (4 bp):
GAGG
Found at i:25576 original size:18 final size:19
Alignment explanation
Indices: 25553--25592 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
25543 AAGATTAACA
*
25553 TTTGATTGTAACA-TTTAT
1 TTTGATCGTAACATTTTAT
*
25571 TTTGATCGTAATATTTTAT
1 TTTGATCGTAACATTTTAT
25590 TTT
1 TTT
25593 TAAAGAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (19 bp):
TTTGATCGTAACATTTTAT
Found at i:26295 original size:42 final size:42
Alignment explanation
Indices: 26182--26297 Score: 205
Period size: 42 Copynumber: 2.8 Consensus size: 42
26172 TCCGAATTTT
* *
26182 CGTGTTTGTTTCACGTAATTCGTTTTCCGAAAAATATTTTCC
1 CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACATTTTCC
*
26224 CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTTTTCC
1 CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACATTTTCC
26266 CGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
1 CGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
26298 TGTAATTCAT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.44
Consensus pattern (42 bp):
CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACATTTTCC
Found at i:26508 original size:21 final size:23
Alignment explanation
Indices: 26467--26515 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 23
26457 CATTTTCATC
26467 AAATATTAATTATTAAATATTTA
1 AAATATTAATTATTAAATATTTA
*
26490 AAATA-TATTTATT-AATATTTA
1 AAATATTAATTATTAAATATTTA
*
26511 TAATA
1 AAATA
26516 ATATAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 12 0.50
22 7 0.29
23 5 0.21
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
AAATATTAATTATTAAATATTTA
Found at i:26519 original size:22 final size:23
Alignment explanation
Indices: 26475--26543 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 23
26465 TCAAATATTA
*
26475 ATTATTAAATATTTAAAAT-ATAT
1 ATTATT-AATATTTATAATAATAT
26498 -TTATTAATATTTATAATAATAT
1 ATTATTAATATTTATAATAATAT
* * *
26520 AATATT-ATATTTTTAATATTAT
1 ATTATTAATATTTATAATAATAT
26542 AT
1 AT
26544 AAAATAATCA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 11 0.28
22 24 0.62
23 4 0.10
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
ATTATTAATATTTATAATAATAT
Found at i:26538 original size:31 final size:31
Alignment explanation
Indices: 26493--26653 Score: 91
Period size: 31 Copynumber: 5.4 Consensus size: 31
26483 ATATTTAAAA
26493 TATATTTATTAATATTTATAATAATATAATAT
1 TATATTT-TTAATATTTATAATAATATAATAT
*
26525 TATATTTTTAATA-TTAT-ATAAAAT-A-AT
1 TATATTTTTAATATTTATAATAATATAATAT
*
26552 CA-A---TT-ATA-TTATAATAATATAAGATAT
1 TATATTTTTAATATTTATAATAATAT-A-ATAT
26579 TATATTTTT-AT-TTTAATAAT-ATATAATA-
1 TATATTTTTAATATTT-ATAATAATATAATAT
* * *
26607 AATTTTTTTATATATTTAATAATGA-ATAATATT
1 TATATTTTTA-ATATTT-ATAATAATATAATA-T
*
26640 TATATATTTCAATA
1 TATAT-TTTTAATA
26654 ATATTTTAGT
Statistics
Matches: 102, Mismatches: 9, Indels: 35
0.70 0.06 0.24
Matches are distributed among these distances:
22 7 0.07
23 8 0.08
26 2 0.02
27 6 0.06
28 9 0.09
29 9 0.09
30 7 0.07
31 31 0.30
32 13 0.13
33 6 0.06
34 4 0.04
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (31 bp):
TATATTTTTAATATTTATAATAATATAATAT
Found at i:26538 original size:52 final size:51
Alignment explanation
Indices: 26467--26602 Score: 138
Period size: 52 Copynumber: 2.6 Consensus size: 51
26457 CATTTTCATC
* **
26467 AAATATTA-ATTATTAAATATTTAAAATATATTTATTAATATTTATAATAATAT
1 AAATATTATATT-TTTAATATTTAAAATATATCAATT-ATA-TTATAATAATAT
26520 -AATATTATATTTTTAATATTATATAAA-ATAATCAATTATATTATAATAATAT
1 AAATATTATATTTTTAATATT-TA-AAATAT-ATCAATTATATTATAATAATAT
26572 AAGATATTATATTTTT-AT-TTTAATAATATAT
1 AA-ATATTATATTTTTAATATTTAA-AATATAT
26603 AATAAATTTT
Statistics
Matches: 72, Mismatches: 3, Indels: 18
0.77 0.03 0.19
Matches are distributed among these distances:
50 1 0.01
51 6 0.08
52 31 0.43
53 13 0.18
54 21 0.29
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (51 bp):
AAATATTATATTTTTAATATTTAAAATATATCAATTATATTATAATAATAT
Found at i:26605 original size:54 final size:52
Alignment explanation
Indices: 26508--26610 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 52
26498 TTATTAATAT
*
26508 TTATAATAATATAATATTATATTTTTAATATTATATAAAATAATCAATTATA
1 TTATAATAATATAATATTATATTTTTAATATTATATAAAATAATAAATTATA
*
26560 TTATAATAATATAAGATATTATATTTTT-ATTTTA-ATAATATATAATAAATT
1 TTATAATAATAT-A-ATATTATATTTTTAATATTATATAA-A-ATAATAAATT
26611 TTTTTATATA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
52 16 0.36
53 7 0.16
54 22 0.49
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (52 bp):
TTATAATAATATAATATTATATTTTTAATATTATATAAAATAATAAATTATA
Found at i:26691 original size:34 final size:31
Alignment explanation
Indices: 26652--26714 Score: 83
Period size: 34 Copynumber: 1.9 Consensus size: 31
26642 TATATTTCAA
26652 TAATATTTTAGTAAAGATATTAAAATA-TACTAAT
1 TAATATTTT--TAAA-ATA-TAAAATAGTACTAAT
26686 TAATATTTTTAAAATATAAAATAGTACTA
1 TAATATTTTTAAAATATAAAATAGTACTA
26715 TTACTTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
30 7 0.25
31 8 0.29
32 4 0.14
34 9 0.32
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (31 bp):
TAATATTTTTAAAATATAAAATAGTACTAAT
Found at i:26901 original size:20 final size:20
Alignment explanation
Indices: 26823--26892 Score: 131
Period size: 20 Copynumber: 3.5 Consensus size: 20
26813 TTTCCAGATG
26823 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
26843 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
*
26863 TTTTACAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
26883 TTTTCCAGAA
1 TTTTCCAGAA
26893 TTCAAATTCC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (20 bp):
TTTTCCAGAAATGTAATTCA
Found at i:26901 original size:40 final size:40
Alignment explanation
Indices: 26823--26901 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
26813 TTTCCAGATG
* **
26823 TTTTCCAGAAATGTAATTCATTTTCCAGAAATGTAATTCA
1 TTTTACAGAAATGTAATTCATTTTCCAGAAATCAAATTCA
*
26863 TTTTACAGAAATGTAATTCATTTTCCAGAATTCAAATTC
1 TTTTACAGAAATGTAATTCATTTTCCAGAAATCAAATTC
26902 CAGTAATTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (40 bp):
TTTTACAGAAATGTAATTCATTTTCCAGAAATCAAATTCA
Found at i:26911 original size:15 final size:15
Alignment explanation
Indices: 26875--26941 Score: 91
Period size: 15 Copynumber: 4.5 Consensus size: 15
26865 TTACAGAAAT
**
26875 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
26890 G-AATTCAAATTCCA
1 GTAATTCAAATTCCA
**
26904 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
26919 GTAATTCAAATTCCA
1 GTAATTCAAATTCCA
26934 GTAATTCA
1 GTAATTCA
26942 TTTTCTGGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
14 12 0.27
15 33 0.73
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.39
Consensus pattern (15 bp):
GTAATTCAAATTCCA
Found at i:26917 original size:29 final size:30
Alignment explanation
Indices: 26875--26946 Score: 137
Period size: 30 Copynumber: 2.4 Consensus size: 30
26865 TTACAGAAAT
26875 GTAATTCATTTTCCAG-AATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
26904 GTAATTCATTTTCCAGTAATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
26934 GTAATTCATTTTC
1 GTAATTCATTTTC
26947 TGGAAAACCA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 16 0.38
30 26 0.62
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (30 bp):
GTAATTCATTTTCCAGTAATTCAAATTCCA
Found at i:27382 original size:22 final size:22
Alignment explanation
Indices: 27354--27405 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
27344 ATACCAGAAT
*
27354 AACATCTAAGTTTGAATGAGGC
1 AACATCTAAGTTTGAATGAGCC
27376 AACATCTAAGTTTGAATGAGCC
1 AACATCTAAGTTTGAATGAGCC
*
27398 GACATCTA
1 AACATCTA
27406 GATCCATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (22 bp):
AACATCTAAGTTTGAATGAGCC
Found at i:27716 original size:20 final size:20
Alignment explanation
Indices: 27688--27757 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
27678 TTGAAAATCA
*
27688 CGTTTCGATTTTCCATTTCG
1 CGTTGCGATTTTCCATTTCG
* ** **
27708 CGTTGCGATAATTGAAAATCG
1 CGTTGCGAT-TTTCCATTTCG
*
27729 CTTTGCGATTTTCCATTTCG
1 CGTTGCGATTTTCCATTTCG
27749 CGTTGCGAT
1 CGTTGCGAT
27758 AGTCTACAGT
Statistics
Matches: 36, Mismatches: 13, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
20 22 0.61
21 14 0.39
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.41
Consensus pattern (20 bp):
CGTTGCGATTTTCCATTTCG
Found at i:27723 original size:41 final size:41
Alignment explanation
Indices: 27663--27758 Score: 149
Period size: 41 Copynumber: 2.3 Consensus size: 41
27653 CTATCGCAAA
* *
27663 TTCGCGTTACGATAGTTGAAAATCACGTTT-CGATTTTCCAT
1 TTCGCGTTGCGATAATTGAAAATCAC-TTTGCGATTTTCCAT
*
27704 TTCGCGTTGCGATAATTGAAAATCGCTTTGCGATTTTCCAT
1 TTCGCGTTGCGATAATTGAAAATCACTTTGCGATTTTCCAT
27745 TTCGCGTTGCGATA
1 TTCGCGTTGCGATA
27759 GTCTACAGTT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
40 3 0.06
41 48 0.94
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.39
Consensus pattern (41 bp):
TTCGCGTTGCGATAATTGAAAATCACTTTGCGATTTTCCAT
Found at i:27777 original size:22 final size:22
Alignment explanation
Indices: 27749--27862 Score: 103
Period size: 22 Copynumber: 5.4 Consensus size: 22
27739 TTCCATTTCG
*
27749 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTTTACAGTTGT
* * **
27771 CGTTGCGAT-TTTTCCAAAT-T
1 CGTTGCGATAGTTTACAGTTGT
* **
27791 CGTTGCGAT--TTTCCAAAT-T
1 CGTTGCGATAGTTTACAGTTGT
*
27810 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTTTACAGTTGT
*
27832 TGTTGCGATAGTTTACAGTTGT
1 CGTTGCGATAGTTTACAGTTGT
27854 CGTTGCGAT
1 CGTTGCGAT
27863 TTTCCAAATT
Statistics
Matches: 77, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
19 19 0.25
20 10 0.13
21 10 0.13
22 38 0.49
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.40
Consensus pattern (22 bp):
CGTTGCGATAGTTTACAGTTGT
Found at i:27795 original size:20 final size:20
Alignment explanation
Indices: 27770--27818 Score: 91
Period size: 19 Copynumber: 2.5 Consensus size: 20
27760 TCTACAGTTG
27770 TCGTTGCGATTTTTCCAAAT
1 TCGTTGCGATTTTTCCAAAT
27790 TCGTTGCGA-TTTTCCAAAT
1 TCGTTGCGATTTTTCCAAAT
27809 TCGTTGCGAT
1 TCGTTGCGAT
27819 AGTCTACAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.68
20 9 0.32
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.43
Consensus pattern (20 bp):
TCGTTGCGATTTTTCCAAAT
Found at i:27883 original size:63 final size:61
Alignment explanation
Indices: 27731--27884 Score: 202
Period size: 63 Copynumber: 2.5 Consensus size: 61
27721 GAAAATCGCT
* * *
27731 TTGCGATTTTCC-ATTTCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTCCAAATTCG
1 TTGCGATTTTCCAAATT--CGTTGCGATAGTCTACAGTTGTCGTTGCGATGTTTACAAATTCG
* **
27793 TTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGTTGTTGTTGCGATAGTTTACAGTTGTCG
1 TTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGTTGTCGTTGCGAT-GTTTACAAAT-TCG
*
27856 TTGCGATTTTCCAAATTCGTTGTGATAGT
1 TTGCGATTTTCCAAATTCGTTGCGATAGT
27885 TAAAAAAAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
61 30 0.37
62 18 0.22
63 34 0.41
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (61 bp):
TTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGTTGTCGTTGCGATGTTTACAAATTCG
Found at i:28643 original size:22 final size:22
Alignment explanation
Indices: 28616--28750 Score: 120
Period size: 22 Copynumber: 6.4 Consensus size: 22
28606 TTTTTGGAAA
28616 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
* * **
28638 ATCGCAACG--AA-TTTGGAAA
1 ATCGCAACGACAACTGTAGACT
* *
28657 ATCGCAACGGCAACTGTAGATT
1 ATCGCAACGACAACTGTAGACT
*
28679 ATTGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
* * * **
28701 ATCGTAACG--AA-TTTGGAAA
1 ATCGCAACGACAACTGTAGACT
28720 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
28742 ATCGCAACG
1 ATCGCAACG
28751 CGAAATGGAA
Statistics
Matches: 85, Mismatches: 22, Indels: 12
0.71 0.18 0.10
Matches are distributed among these distances:
19 25 0.29
20 4 0.05
21 4 0.05
22 52 0.61
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (22 bp):
ATCGCAACGACAACTGTAGACT
Found at i:28664 original size:41 final size:42
Alignment explanation
Indices: 28592--28688 Score: 142
Period size: 41 Copynumber: 2.3 Consensus size: 42
28582 TTTTTTTTTA
*
28592 ACTATCACAACGAATTTTTGGAAAATCGCAACGACAACTGTAG
1 ACTATCGCAACGAA-TTTTGGAAAATCGCAACGACAACTGTAG
*
28635 ACTATCGCAACGAA-TTTGGAAAATCGCAACGGCAACTGTAG
1 ACTATCGCAACGAATTTTGGAAAATCGCAACGACAACTGTAG
* *
28676 ATTATTGCAACGA
1 ACTATCGCAACGA
28689 CAACTGTAGA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 37 0.74
43 13 0.26
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.23
Consensus pattern (42 bp):
ACTATCGCAACGAATTTTGGAAAATCGCAACGACAACTGTAG
Found at i:28697 original size:63 final size:63
Alignment explanation
Indices: 28616--28750 Score: 234
Period size: 63 Copynumber: 2.1 Consensus size: 63
28606 TTTTTGGAAA
* *
28616 ATCGCAACGACAACTGTAGACTATCGCAACGAATTTGGAAAATCGCAACGGCAACTGTAGATT
1 ATCGCAACGACAACTGTAGACTATCGCAACGAATTTGGAAAATCGCAACGACAACTGTAGACT
* *
28679 ATTGCAACGACAACTGTAGACTATCGTAACGAATTTGGAAAATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACTATCGCAACGAATTTGGAAAATCGCAACGACAACTGTAGACT
28742 ATCGCAACG
1 ATCGCAACG
28751 CGAAATGGAA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
63 67 1.00
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (63 bp):
ATCGCAACGACAACTGTAGACTATCGCAACGAATTTGGAAAATCGCAACGACAACTGTAGACT
Found at i:28727 original size:41 final size:41
Alignment explanation
Indices: 28682--28921 Score: 223
Period size: 41 Copynumber: 5.8 Consensus size: 41
28672 GTAGATTATT
* *
28682 GCAACGACAACTGTAGACTATCGTAA-CGAATTTGGAAAATC
1 GCAACGACAACTGTAGACTATCGCAACCGAA-ATGGAAAATC
28723 GCAACGACAACTGTAGACTATCGCAACGCGAAATGGAAAATC
1 GCAACGACAACTGTAGACTATCGCAAC-CGAAATGGAAAATC
*
28765 GCAACG-CGATCT-TCA-ACTATCGCAACGCGAAATGGAAAATC
1 GCAACGAC-AACTGT-AGACTATCGCAAC-CGAAATGGAAAATC
*
28806 GCAACG-CGATCT-TCA-ACTATCGCAACCCGAAATGGAAAATC
1 GCAACGAC-AACTGT-AGACTATCGCAA-CCGAAATGGAAAATC
* *
28847 GCAACG-CGACTTTCA-ACTATCGCAACCCGAAATGGAAAATC
1 GCAACGACAACTGT-AGACTATCGCAA-CCGAAATGGAAAATC
* *
28888 GCAACG-CAATTTTCA-ACTATCGCAACGCGAAATG
1 GCAACGACAACTGT-AGACTATCGCAAC-CGAAATG
28922 CAACGTGAAT
Statistics
Matches: 185, Mismatches: 7, Indels: 14
0.90 0.03 0.07
Matches are distributed among these distances:
40 3 0.02
41 158 0.85
42 20 0.11
43 4 0.02
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.18
Consensus pattern (41 bp):
GCAACGACAACTGTAGACTATCGCAACCGAAATGGAAAATC
Found at i:28767 original size:20 final size:20
Alignment explanation
Indices: 28742--28894 Score: 126
Period size: 20 Copynumber: 7.5 Consensus size: 20
28732 ACTGTAGACT
28742 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
** ** *
28762 ATCGCAACGCGATCTTCAACT
1 ATCGCAACGCGAAATGGAA-A
28783 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
** ** *
28803 ATCGCAACGCGATCTTCAACT
1 ATCGCAACGCGAAATGGAA-A
*
28824 ATCGCAACCCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
** ** *
28844 ATCGCAACGCGACTTTCAACT
1 ATCGCAACGCGAAATGGAA-A
*
28865 ATCGCAACCCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
28885 ATCGCAACGC
1 ATCGCAACGC
28895 AATTTTCAAC
Statistics
Matches: 96, Mismatches: 34, Indels: 6
0.71 0.25 0.04
Matches are distributed among these distances:
20 53 0.55
21 43 0.45
ACGTcount: A:0.37, C:0.28, G:0.19, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAATGGAAA
Found at i:28784 original size:82 final size:80
Alignment explanation
Indices: 28714--28921 Score: 303
Period size: 82 Copynumber: 2.5 Consensus size: 80
28704 GTAACGAATT
28714 TGGAAAATCGCAACGACAACTGT-AGACTATCGCAACGCGAAATGGAAAATCGCAACGCGA-TCT
1 TGGAAAATCGCAACG-CAACT-TCA-ACTATCGCAACGCGAAATGGAAAATCGCAACGCGACT-T
28777 TCAACTATCGCAACGCGAAA
62 TCAACTATCGCAAC-CGAAA
* *
28797 TGGAAAATCGCAACGCGATCTTCAACTATCGCAACCCGAAATGGAAAATCGCAACGCGACTTTCA
1 TGGAAAATCGCAACGC-AACTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGACTTTCA
28862 ACTATCGCAACCCGAAA
65 ACTATCGCAA-CCGAAA
*
28879 TGGAAAATCGCAACGCAATTTTCAACTATCGCAACGCGAAATG
1 TGGAAAATCGCAACGCAA-CTTCAACTATCGCAACGCGAAATG
28922 CAACGTGAAT
Statistics
Matches: 115, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
81 1 0.01
82 93 0.81
83 21 0.18
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.17
Consensus pattern (80 bp):
TGGAAAATCGCAACGCAACTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGACTTTCAA
CTATCGCAACCGAAA
Found at i:28788 original size:21 final size:21
Alignment explanation
Indices: 28739--28925 Score: 132
Period size: 21 Copynumber: 9.1 Consensus size: 21
28729 ACAACTGTAG
**
28739 ACTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGAAATTCA
* **
28760 A-AATCGCAACGCGATCTTCA
1 ACTATCGCAACGCGAAATTCA
**
28780 ACTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGAAATTCA
* **
28801 A-AATCGCAACGCGATCTTCA
1 ACTATCGCAACGCGAAATTCA
* **
28821 ACTATCGCAACCCGAAATGGA
1 ACTATCGCAACGCGAAATTCA
* **
28842 A-AATCGCAACGCGACTTTCA
1 ACTATCGCAACGCGAAATTCA
* **
28862 ACTATCGCAACCCGAAATGGA
1 ACTATCGCAACGCGAAATTCA
* *
28883 A-AATCGCAACGC-AATTTTCA
1 ACTATCGCAACGCGAA-ATTCA
*
28903 ACTATCGCAACGCGAAATGCA
1 ACTATCGCAACGCGAAATTCA
28924 AC
1 AC
28926 GTGAATTTGC
Statistics
Matches: 119, Mismatches: 41, Indels: 12
0.69 0.24 0.07
Matches are distributed among these distances:
19 2 0.02
20 56 0.47
21 59 0.50
22 2 0.02
ACGTcount: A:0.37, C:0.28, G:0.18, T:0.17
Consensus pattern (21 bp):
ACTATCGCAACGCGAAATTCA
Found at i:50686 original size:23 final size:22
Alignment explanation
Indices: 50659--50705 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
50649 AACCCTAAAC
50659 AAGCCCAAAAATCGTATCTGCTA
1 AAGCCC-AAAATCGTATCTGCTA
* * *
50682 AAGCCCATAATTGTATCTTCTA
1 AAGCCCAAAATCGTATCTGCTA
50704 AA
1 AA
50706 CTCGCGATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (22 bp):
AAGCCCAAAATCGTATCTGCTA
Found at i:57100 original size:14 final size:14
Alignment explanation
Indices: 57081--57109 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
57071 CTTGTGTTCG
57081 ATACTTTTACATAT
1 ATACTTTTACATAT
57095 ATACTTTTACATAT
1 ATACTTTTACATAT
57109 A
1 A
57110 AAAAAAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (14 bp):
ATACTTTTACATAT
Found at i:59916 original size:20 final size:20
Alignment explanation
Indices: 59886--60101 Score: 157
Period size: 20 Copynumber: 10.7 Consensus size: 20
59876 ATTTCCAGAT
*
59886 TCGCAACGCGATTCTGACTA
1 TCGCAATGCGATTCTGACTA
* ** *
59906 TCGCATTGCGATT-TTCCAAA
1 TCGCAATGCGATTCTGAC-TA
** *
59926 TTCGCGTTGCGATTTTCCGACTA
1 -TCGCAATGCGA--TTCTGACTA
* * *
59949 TCGCAATGCGAATATGTA-AA
1 TCGCAATGCGATTCTG-ACTA
*
59969 TCGCAATGCGATTATGACTA
1 TCGCAATGCGATTCTGACTA
*
59989 TCGCAATGCGATTATGACTA
1 TCGCAATGCGATTCTGACTA
* *
60009 TCGCAACGCGATTCTAACTA
1 TCGCAATGCGATTCTGACTA
* * * *
60029 TAGCAACGAGATTCTTACTA
1 TCGCAATGCGATTCTGACTA
* * *
60049 TCGTAACGCAATTCTGACTA
1 TCGCAATGCGATTCTGACTA
* *
60069 TCGCAACGCGATGCTGACTA
1 TCGCAATGCGATTCTGACTA
60089 TCGCAATGCGATT
1 TCGCAATGCGATT
60102 TTCAAAGCGC
Statistics
Matches: 155, Mismatches: 34, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
19 3 0.02
20 128 0.83
21 11 0.07
22 9 0.06
23 3 0.02
24 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (20 bp):
TCGCAATGCGATTCTGACTA
Found at i:60302 original size:22 final size:22
Alignment explanation
Indices: 60277--60319 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
60267 GGCGACATCC
60277 GTCCCCATCTCCGACGAAATCA
1 GTCCCCATCTCCGACGAAATCA
* *
60299 GTCCCCATCTTCGGCGAAATC
1 GTCCCCATCTCCGACGAAATC
60320 CGTCTATCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.40, G:0.16, T:0.21
Consensus pattern (22 bp):
GTCCCCATCTCCGACGAAATCA
Found at i:60810 original size:20 final size:20
Alignment explanation
Indices: 60706--60812 Score: 101
Period size: 20 Copynumber: 5.5 Consensus size: 20
60696 AAAATCGCAA
*
60706 TGCGATTTT-AGTTTCGCGT
1 TGCGATTTTCATTTTCGCGT
60725 TGCGATTTTCA-TTTCGCGT
1 TGCGATTTTCATTTTCGCGT
** ** * *
60744 TGCGATAGTCAAATTCACGC
1 TGCGATTTTCATTTTCGCGT
** *
60764 TGCGATAGTCATTTTCGTGT
1 TGCGATTTTCATTTTCGCGT
*
60784 TGCGATTTTCATTTTCGTGT
1 TGCGATTTTCATTTTCGCGT
60804 TGCGATTTT
1 TGCGATTTT
60813 AAGTTTCAGA
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
19 26 0.35
20 48 0.65
ACGTcount: A:0.15, C:0.18, G:0.22, T:0.45
Consensus pattern (20 bp):
TGCGATTTTCATTTTCGCGT
Found at i:60819 original size:20 final size:20
Alignment explanation
Indices: 60776--60819 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
60766 CGATAGTCAT
* *
60776 TTTCGTGTTGCGATTTTCAT
1 TTTCGTGTTGCGATTTTAAG
60796 TTTCGTGTTGCGATTTTAAG
1 TTTCGTGTTGCGATTTTAAG
60816 TTTC
1 TTTC
60820 AGAAACTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.11, C:0.14, G:0.20, T:0.55
Consensus pattern (20 bp):
TTTCGTGTTGCGATTTTAAG
Found at i:62750 original size:20 final size:20
Alignment explanation
Indices: 62725--62789 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
62715 TTTACTTTCA
**
62725 CAACGCGAAAATGACTATCG
1 CAACGCGAATTTGACTATCG
62745 CAACGCGAATTTGACTATCG
1 CAACGCGAATTTGACTATCG
62765 CAACGCGAATTTGACTATCG
1 CAACGCGAATTTGACTATCG
62785 CAACG
1 CAACG
62790 AAAGAATCGC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (20 bp):
CAACGCGAATTTGACTATCG
Found at i:62857 original size:20 final size:20
Alignment explanation
Indices: 62832--62879 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
62822 GCGATTCTCT
62832 CGTTGCGATAGTCAAATTT-G
1 CGTTGCGATAGTC-AATTTCG
*
62852 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCAATTTCG
62872 CGTTGCGA
1 CGTTGCGA
62880 AAGTAAACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGTCAATTTCG
Found at i:63095 original size:20 final size:20
Alignment explanation
Indices: 63070--63115 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
63060 TAGTTTACTT
63070 TCGCAACGCAAAAATGACTA
1 TCGCAACGCAAAAATGACTA
*
63090 TCGCAACGCGAAAATGACTA
1 TCGCAACGCAAAAATGACTA
63110 TCGCAA
1 TCGCAA
63116 TGAAAGAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.41, C:0.26, G:0.17, T:0.15
Consensus pattern (20 bp):
TCGCAACGCAAAAATGACTA
Found at i:63189 original size:20 final size:20
Alignment explanation
Indices: 63160--63207 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
63150 ACGATTCTCT
*
63160 CGTTGAGATAGTCAAATTCA
1 CGTTGCGATAGTCAAATTCA
** *
63180 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCAAATTCA
63200 CGTTGCGA
1 CGTTGCGA
63208 AAGTAAACTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCA
Found at i:63339 original size:328 final size:328
Alignment explanation
Indices: 62742--63424 Score: 1204
Period size: 328 Copynumber: 2.1 Consensus size: 328
62732 AAAATGACTA
** **
62742 TCGCAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGAAAGAATCGCAATGCGA
1 TCGCAACGCGAAAATGACTATCGCAACGCGAAAATGACTATCGCAACGAAAGAATCGCAATGCGA
* * **
62807 AATGAAAATCGCATTGCGATTCTCTCGTTGCGATAGTCAAATTTGCGTTGCGATAGTCATTTTCG
66 AATGAAAATCGCATTACGATTCTCTCGTTGAGATAGTCAAATTCACGTTGCGATAGTCATTTTCG
62872 CGTTGCGAAAGTAAACTATTCTTCTTCTGCAAATTGAAACTTGAATGGATTACTTAGTAAATTCA
131 CGTTGCGAAAGTAAACTATTCTTCTTCTGCAAATTGAAACTTGAATGGATTACTTAGTAAATTCA
* * *
62937 TTCGGTTGCTGCCAATACTGCTAAATTATTTATTCTTTAACTCTGTGAAGTTAGTATTTGTTTTT
196 TTCGGTTGCTGCCAATACTGCTAAACTATTTATTCTTTAACCCTGTGAAGTTAATATTTGTTTTT
63002 GGTTGTCTTTTGGATGAAGTAATGCAATCCATTCAAGTTTCAATTTGCAGAAGAAGAATAGTTTA
261 GGTTGTCTTTTGGATGAAGTAATGCAATCCATTCAAGTTTCAATTTGCAGAAGAAGAATAGTTTA
63067 CTT
326 CTT
* * *
63070 TCGCAACGCAAAAATGACTATCGCAACGCGAAAATGACTATCGCAATGAAAGAATCGTAATGCGA
1 TCGCAACGCGAAAATGACTATCGCAACGCGAAAATGACTATCGCAACGAAAGAATCGCAATGCGA
63135 AATGAAAATCGCATTACGATTCTCTCGTTGAGATAGTCAAATTCACGTTGCGATAGTCATTTTCG
66 AATGAAAATCGCATTACGATTCTCTCGTTGAGATAGTCAAATTCACGTTGCGATAGTCATTTTCG
*
63200 CGTTGCGAAAGTAAACTATTCTTCTTCTGCAAATTGAAACTTGAATGGATTGCTTAGTAAATTCA
131 CGTTGCGAAAGTAAACTATTCTTCTTCTGCAAATTGAAACTTGAATGGATTACTTAGTAAATTCA
*
63265 TTCGGTTGCTGCCAATACTGCTAAACTGTTTATTCTTTAACCCTGTGAAGTTAATATTTGTTTTT
196 TTCGGTTGCTGCCAATACTGCTAAACTATTTATTCTTTAACCCTGTGAAGTTAATATTTGTTTTT
* *
63330 GGTTGTCTTTTGGTTGAAGTAATGCAATCCATTCAAGTTTCATTTTGCAGAAGAAGAATAGTTTA
261 GGTTGTCTTTTGGATGAAGTAATGCAATCCATTCAAGTTTCAATTTGCAGAAGAAGAATAGTTTA
63395 CTT
326 CTT
63398 TCGCAACGCGAAAATGACTATCGCAAC
1 TCGCAACGCGAAAATGACTATCGCAAC
63425 AAAAGAATCG
Statistics
Matches: 336, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
328 336 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (328 bp):
TCGCAACGCGAAAATGACTATCGCAACGCGAAAATGACTATCGCAACGAAAGAATCGCAATGCGA
AATGAAAATCGCATTACGATTCTCTCGTTGAGATAGTCAAATTCACGTTGCGATAGTCATTTTCG
CGTTGCGAAAGTAAACTATTCTTCTTCTGCAAATTGAAACTTGAATGGATTACTTAGTAAATTCA
TTCGGTTGCTGCCAATACTGCTAAACTATTTATTCTTTAACCCTGTGAAGTTAATATTTGTTTTT
GGTTGTCTTTTGGATGAAGTAATGCAATCCATTCAAGTTTCAATTTGCAGAAGAAGAATAGTTTA
CTT
Found at i:63512 original size:18 final size:19
Alignment explanation
Indices: 63468--63514 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
63458 GCGATTCTCT
*
63468 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCA-TTTCA
63488 CGTTGCGATAGTCA-TTCA
1 CGTTGCGATAGTCATTTCA
*
63506 TGTTGCGAT
1 CGTTGCGAT
63515 TTTAAGTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 11 0.44
20 14 0.56
ACGTcount: A:0.17, C:0.19, G:0.26, T:0.38
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCA
Found at i:64037 original size:18 final size:20
Alignment explanation
Indices: 63997--64038 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
63987 CTCACCTGTC
63997 ATCGTTCAAGAGGCCTCCCCT
1 ATCGTTCAAGAGG-CTCCCCT
64018 ATCGTTCAAGAGG-T-CCCT
1 ATCGTTCAAGAGGCTCCCCT
64036 ATC
1 ATC
64039 ATCCCTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.33
19 1 0.05
21 13 0.62
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.26
Consensus pattern (20 bp):
ATCGTTCAAGAGGCTCCCCT
Found at i:65518 original size:14 final size:14
Alignment explanation
Indices: 65499--65533 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
65489 GCTTGTTTAA
65499 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
65513 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
65527 TTGATTT
1 TTGATTT
65534 TTTTATTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:65733 original size:20 final size:20
Alignment explanation
Indices: 65708--66026 Score: 314
Period size: 20 Copynumber: 16.9 Consensus size: 20
65698 AACGCGATAC
*
65708 CGTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATTCG
65728 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
65748 CGTTGCGAT--T----TTCT
1 CGTTGCGATAGTCAAATTCG
* *
65762 CGTTGCGATAGTCAAATACC
1 CGTTGCGATAGTCAAATTCG
* *
65782 CATTGCGATGGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
65802 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
* *
65822 TGTTGCGAT--T----TTCT
1 CGTTGCGATAGTCAAATTCG
* * *
65836 CGTTACGATAGTCAAATACC
1 CGTTGCGATAGTCAAATTCG
*
65856 CGTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
65876 CGTTGCGATATTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
65896 CGTTGCGATATTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
65916 CGTTGCGATAGTCATATTCG
1 CGTTGCGATAGTCAAATTCG
*
65936 TGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
65956 CGTTGCGAT--T----TTTG
1 CGTTGCGATAGTCAAATTCG
* *
65970 AGTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
65990 CGTTGCGATAGTTAAATTCG
1 CGTTGCGATAGTCAAATTCG
* *
66010 TGTTGCGATATTCAAAT
1 CGTTGCGATAGTCAAAT
66027 GAATGTGTAA
Statistics
Matches: 246, Mismatches: 35, Indels: 36
0.78 0.11 0.11
Matches are distributed among these distances:
14 33 0.13
16 3 0.01
18 3 0.01
20 207 0.84
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCG
Found at i:65797 original size:74 final size:74
Alignment explanation
Indices: 65707--65964 Score: 354
Period size: 74 Copynumber: 3.4 Consensus size: 74
65697 CAACGCGATA
65707 CCGTTGCGATAATCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTCTCGTTGCGATA
1 CCGTTGCGATAATCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTCTCGTTGCGATA
65772 GTCAAATAC
66 GTCAAATAC
* ** * *
65781 CCATTGCGATGGTCAAATTCGCGTTGCGATAGTCAAATTCGTGTTGCGATTTTCTCGTTACGATA
1 CCGTTGCGATAATCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTCTCGTTGCGATA
65846 GTCAAATAC
66 GTCAAATAC
* *
65855 CCGTTGCGATAATCAAATTCGCGTTGCGATATTCAAATTCGCGTTGCGATATTCAAATTCGCGTT
1 CCGTTGCGATAATCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCG--ATT----TTCTCGTT
* *
65920 GCGATAGTCATATTC
60 GCGATAGTCAAATAC
** *
65935 GTGTTGCGATAGTCAAATTCGCGTTGCGAT
1 CCGTTGCGATAATCAAATTCGCGTTGCGAT
65965 TTTTGAGTTG
Statistics
Matches: 161, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
74 112 0.70
76 3 0.02
80 46 0.29
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (74 bp):
CCGTTGCGATAATCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTCTCGTTGCGATA
GTCAAATAC
Found at i:66249 original size:140 final size:140
Alignment explanation
Indices: 65997--66259 Score: 490
Period size: 140 Copynumber: 1.9 Consensus size: 140
65987 TCGCGTTGCG
* * *
65997 ATAGTTAAATTCGTGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACATATCA
1 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
*
66062 TAGCAATGTTCAAACTCAAGTTACTAATACATGTCTAACTGAAAATGTTAAAAGTTTACACATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
66127 AATACACATA
131 AATACACATA
66137 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
1 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
66202 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTA
66260 TAGATAATAC
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
140 119 1.00
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (140 bp):
ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
AATACACATA
Found at i:68415 original size:14 final size:15
Alignment explanation
Indices: 68396--68432 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
68386 TCCCGTGGCA
68396 TTTTCTTCGGGGA-C
1 TTTTCTTCGGGGATC
*
68410 TTTTCTTCGGGGATT
1 TTTTCTTCGGGGATC
68425 TTTTCTTC
1 TTTTCTTC
68433 TTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.05, C:0.19, G:0.22, T:0.54
Consensus pattern (15 bp):
TTTTCTTCGGGGATC
Found at i:68656 original size:24 final size:24
Alignment explanation
Indices: 68622--68675 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
68612 CTGAAACATC
68622 ATCAAAATCCGAGTATT-GACCAAG
1 ATCAAAATCCGAGTATTGGA-CAAG
* *
68646 ATCAAAGTCCGGGTATTGGACAAG
1 ATCAAAATCCGAGTATTGGACAAG
68670 ATCAAA
1 ATCAAA
68676 TTTTGAATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 25 0.93
25 2 0.07
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGGACAAG
Found at i:69520 original size:20 final size:20
Alignment explanation
Indices: 69495--69581 Score: 104
Period size: 20 Copynumber: 4.3 Consensus size: 20
69485 GAAATTCAGT
69495 GTTGCGAGAGTCAGAATCGC
1 GTTGCGAGAGTCAGAATCGC
* *
69515 GTTGCGATAGTCAGAATCTC
1 GTTGCGAGAGTCAGAATCGC
*
69535 GTTGCGATAGTCAGAATCGC
1 GTTGCGAGAGTCAGAATCGC
* *
69555 ATTGCGATG-GTCATAATCGC
1 GTTGCGA-GAGTCAGAATCGC
*
69575 ATTGCGA
1 GTTGCGA
69582 TTTACATATT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (20 bp):
GTTGCGAGAGTCAGAATCGC
Found at i:69582 original size:20 final size:19
Alignment explanation
Indices: 69504--69621 Score: 101
Period size: 20 Copynumber: 5.9 Consensus size: 19
69494 TGTTGCGAGA
*
69504 GTCAGAATCGCGTTGCGAT
1 GTCAGAATCGCATTGCGAT
* *
69523 AGTCAGAATCTCGTTGCGAT
1 -GTCAGAATCGCATTGCGAT
69543 AGTCAGAATCGCATTGCGAT
1 -GTCAGAATCGCATTGCGAT
*
69563 GGTCATAATCGCATTGCGAT
1 -GTCAGAATCGCATTGCGAT
* * *
69583 TTACATATTCGCATTGCGAT
1 GT-CAGAATCGCATTGCGAT
* * *
69603 TTACATATTCGCATTGCGA
1 GT-CAGAATCGCATTGCGA
69622 ATTCAGAAAA
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
19 1 0.01
20 89 0.99
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
GTCAGAATCGCATTGCGAT
Found at i:69582 original size:40 final size:40
Alignment explanation
Indices: 69496--69683 Score: 125
Period size: 40 Copynumber: 4.7 Consensus size: 40
69486 AAATTCAGTG
* * * * *
69496 TTGCGAGAGTCAGAATCGCGTTGCGATAGT-CAGAATCTCG
1 TTGCGATAGTCAGAATCGCATTGCGAT-GTACATAATCGCA
69536 TTGCGATAGTCAGAATCGCATTGCGATGGT-CATAATCGCA
1 TTGCGATAGTCAGAATCGCATTGCGAT-GTACATAATCGCA
* * * * *
69576 TTGCGAT-TTACATATTCGCATTGCGATTTACATATTCGCA
1 TTGCGATAGT-CAGAATCGCATTGCGATGTACATAATCGCA
* ** * *
69616 TTGCGA-ATTCAGAAAATCGCAACGCGAATTTGA-AAAATCGCA
1 TTGCGATAGTCAG--AATCGCATTGCG-ATGT-ACATAATCGCA
* *
69658 ATGCGATAGTCAGAATCGCGTTGCGA
1 TTGCGATAGTCAGAATCGCATTGCGA
69684 ATCTGGAAAC
Statistics
Matches: 118, Mismatches: 22, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
39 4 0.03
40 74 0.63
41 18 0.15
42 16 0.14
43 6 0.05
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (40 bp):
TTGCGATAGTCAGAATCGCATTGCGATGTACATAATCGCA
Found at i:69642 original size:21 final size:21
Alignment explanation
Indices: 69618--69672 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
69608 TATTCGCATT
69618 GCGAATTCAGAAAATCGCAAC
1 GCGAATTCAGAAAATCGCAAC
* *
69639 GCGAATT-TGAAAAATCGCAAT
1 GCGAATTCAG-AAAATCGCAAC
*
69660 GCGATAGTCAGAA
1 GCGA-ATTCAGAA
69673 TCGCGTTGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
20 1 0.04
21 21 0.78
22 4 0.15
23 1 0.04
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.18
Consensus pattern (21 bp):
GCGAATTCAGAAAATCGCAAC
Found at i:75107 original size:20 final size:19
Alignment explanation
Indices: 75083--75129 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
75073 TCGTAAAATT
75083 TTATAAATATATATTTAATAA
1 TTATAAATATAT-TTTAA-AA
* *
75104 -TATAACTTTATTTTAAAA
1 TTATAAATATATTTTAAAA
75122 TTATAAAT
1 TTATAAAT
75130 GAGCGTGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
18 2 0.09
19 11 0.50
20 9 0.41
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
TTATAAATATATTTTAAAA
Found at i:82540 original size:35 final size:36
Alignment explanation
Indices: 82494--82570 Score: 113
Period size: 35 Copynumber: 2.2 Consensus size: 36
82484 AAAACAGTCC
* *
82494 TCAATTTCATTCTAAACACC-AATTTCC-AAAGTAAT
1 TCAATTTCATTCTAAAC-CCTAAATTCCAAAAATAAT
82529 TCAATTTCATTCTAAACCCTAAATTCCAAAAATAAT
1 TCAATTTCATTCTAAACCCTAAATTCCAAAAATAAT
82565 TCAATT
1 TCAATT
82571 AAATTCAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
34 2 0.05
35 23 0.61
36 13 0.34
ACGTcount: A:0.42, C:0.22, G:0.01, T:0.35
Consensus pattern (36 bp):
TCAATTTCATTCTAAACCCTAAATTCCAAAAATAAT
Found at i:83102 original size:130 final size:128
Alignment explanation
Indices: 82962--83207 Score: 402
Period size: 130 Copynumber: 1.9 Consensus size: 128
82952 TATTTATATA
* **
82962 ATCAATTTGGTCCTAAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
*
83027 TTAGCACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
66 TTA--ACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
*
83092 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCATGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
* * *
83157 TTAACATGATCATGATATATGTTATTGGTGACACATGTCACCACCTAATTA
66 TTAACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTA
83208 GAAGAAAATT
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
128 44 0.41
130 64 0.59
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (128 bp):
ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
TTAACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:83179 original size:21 final size:21
Alignment explanation
Indices: 83136--83180 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
83126 AATTAATCAT
*
83136 TTAACCATGATCTGACATGTG
1 TTAACCATGATCTGACATATG
*
83157 TTAA-CATGATCATGATATATG
1 TTAACCATGATC-TGACATATG
83178 TTA
1 TTA
83181 TTGGTGACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (21 bp):
TTAACCATGATCTGACATATG
Found at i:83690 original size:16 final size:18
Alignment explanation
Indices: 83669--83701 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
83659 ATTTCTTATT
83669 AAAATA-AAAT-ATTCAA
1 AAAATATAAATGATTCAA
83685 AAAATATAAATGATTCA
1 AAAATATAAATGATTCA
83702 TACATTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (18 bp):
AAAATATAAATGATTCAA
Found at i:84235 original size:27 final size:26
Alignment explanation
Indices: 84180--84248 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 26
84170 TTTATCAAGT
* *
84180 ATTTTTAATTATTATAATATTATAGTA
1 ATTTTTAATAATT-TAATATTATAATA
*
84207 ATTTTTAATAATTTAATAATTCTAATA
1 ATTTTTAATAATTTAAT-ATTATAATA
*
84234 ATTATTTTATAATTT
1 ATT-TTTAATAATTT
84249 TTAAAAGTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 4 0.11
27 22 0.61
28 10 0.28
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (26 bp):
ATTTTTAATAATTTAATATTATAATA
Done.