Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000540.1 Hibiscus syriacus cultivar Beakdansim tig00001046_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50209

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2993--3289
37
8.1
36
77
13
236
46
2
6
45
1.40
3024--3333
35
8.5
35
75
15
224
46
1
6
44
1.39
3367--3416
3
18.0
3
80
15
63
28
0
0
72
0.86
3736--3779
19
2.3
19
84
0
61
47
27
13
11
1.77
4304--4427
48
2.6
47
78
13
130
16
10
3
69
1.30
4396--4420
11
2.3
11
100
0
50
16
0
0
84
0.63
5678--5763
10
8.3
11
68
20
60
41
1
2
54
1.20
5678--5763
30
2.8
30
85
3
109
41
1
2
54
1.20
6473--6559
31
2.8
30
81
10
95
54
3
1
41
1.25
12212--12297
35
2.5
33
77
17
86
54
9
8
27
1.60
16031--16088
23
2.6
23
78
10
66
44
1
1
51
1.21
16009--16063
17
3.2
17
78
12
58
41
1
0
56
1.10
16046--16093
22
2.1
23
85
11
64
37
4
4
54
1.39
16031--16095
23
2.8
23
78
17
64
41
3
3
52
1.32
23314--23400
16
5.4
16
85
0
111
20
22
13
42
1.88
23318--23400
32
2.6
32
88
3
123
20
21
13
44
1.85
23669--23715
14
3.7
14
71
26
50
44
0
4
51
1.21
23668--23716
23
2.1
24
96
3
91
46
0
4
48
1.20
24007--24043
15
2.4
15
95
4
65
40
2
5
51
1.39
24469--24562
48
1.9
49
86
2
136
32
6
9
51
1.60
24551--24587
15
2.4
15
95
4
65
40
2
5
51
1.39
24612--24636
13
1.9
13
100
0
50
56
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24944--25017
21
3.5
20
78
7
76
21
0
25
52
1.47
24998--25126
49
2.6
50
75
14
124
35
5
8
50
1.56
25090--25126
15
2.4
15
95
4
65
40
2
5
51
1.39
23798--26578
558
5.1
544
91
4
4458
36
9
12
42
1.74
25497--25530
7
4.9
7
100
0
68
14
0
29
55
1.40
25497--25537
21
2.0
21
90
0
64
19
0
26
53
1.45
25493--25570
21
3.8
21
74
16
63
21
0
28
50
1.49
26045--26100
27
2.1
26
90
3
85
28
0
23
48
1.51
26097--26191
49
2.0
49
87
2
138
34
7
7
50
1.58
26184--26215
2
16.0
2
93
0
55
46
0
0
53
1.00
27001--27140
64
2.2
64
85
2
192
28
28
17
25
1.98
29810--29842
17
1.9
17
93
0
57
6
12
9
72
1.26
30454--30498
19
2.4
19
92
3
74
13
11
8
66
1.44
33902--34760
84
10.4
82
79
4
809
30
25
20
23
1.99
33902--34760
164
5.2
164
84
3
974
30
25
20
23
1.99
33902--34760
248
3.5
244
82
5
911
30
25
20
23
1.99
33944--34760
329
2.5
330
86
3
1119
30
25
20
23
1.99
41966--42056
42
2.2
42
95
0
164
20
8
20
49
1.75
47661--47697
18
2.1
18
85
14
51
43
10
13
32
1.79

Tables:   1

The End!