Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005405.1 Hibiscus syriacus cultivar Beakdansim tig00012395_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51024

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
305--348
22
2.0
21
82
4
52
36
15
4
43
1.68
303--350
21
2.3
20
79
10
51
35
14
4
45
1.64
8839--9477
85
7.5
85
85
1
724
34
18
18
27
1.95
10248--10284
2
19.0
2
88
5
58
45
0
2
51
1.15
10269--10356
36
2.5
35
82
10
106
44
2
4
48
1.35
10298--10612
35
8.6
37
77
16
236
44
3
6
44
1.49
10298--10612
71
4.3
74
78
14
298
44
3
6
44
1.49
10555--10646
39
2.3
40
79
7
107
51
3
2
43
1.30
11129--11170
18
2.3
18
91
0
66
40
30
14
14
1.85
11968--12018
14
3.7
14
75
15
52
25
7
0
66
1.18
14238--14274
15
2.4
16
82
13
51
40
0
5
54
1.24
15251--15275
12
2.1
12
100
0
50
52
0
0
48
1.00
15326--15421
42
2.3
42
98
0
183
58
2
0
39
1.10
16070--16132
11
5.9
11
67
14
51
55
1
1
41
1.19
16659--16784
7
18.0
7
70
9
51
42
34
0
23
1.55
16665--16705
13
2.9
15
82
10
50
41
31
0
26
1.56
16666--16787
49
2.5
49
77
4
120
42
32
0
24
1.55
16734--16775
22
2.0
21
90
4
66
50
33
0
16
1.46
18902--18930
11
2.5
12
94
5
51
17
6
34
41
1.76
20445--20501
28
2.1
28
87
9
82
29
5
14
50
1.64
22280--22320
20
2.0
21
90
4
66
51
0
0
48
1.00
22302--22339
15
2.6
14
88
8
58
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24231--24303
24
3.0
24
88
4
67
10
15
24
49
1.76
24241--24296
14
4.3
14
82
17
75
8
14
25
51
1.70
24242--24316
24
3.1
23
90
3
96
10
12
21
56
1.66
25296--25370
10
7.7
10
71
21
61
10
12
21
56
1.66
25302--25366
16
4.1
16
91
0
112
9
12
21
56
1.63
27617--27688
29
2.5
27
78
12
72
48
6
13
30
1.69
27629--27699
29
2.4
29
85
0
106
46
9
18
25
1.79
28671--28793
64
1.9
64
88
6
187
29
23
20
26
1.99
28962--29037
36
2.1
36
97
0
143
43
14
10
31
1.79
33507--33536
15
2.0
15
100
0
60
13
46
26
13
1.80
33959--34034
35
2.2
35
97
0
143
40
15
10
32
1.82
38502--38531
15
2.0
15
100
0
60
13
46
26
13
1.80
38953--39028
36
2.1
36
97
0
143
43
14
10
31
1.79
42870--43060
65
3.0
63
83
11
237
27
19
22
30
1.98
43413--43472
24
2.5
24
97
0
111
20
40
0
40
1.52
45732--45815
23
3.7
22
76
9
89
26
23
26
23
2.00
49612--49651
21
1.9
21
85
10
55
35
7
2
55
1.42

Tables:   1

The End!