genome.fa.s5407.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005407.1 Hibiscus syriacus cultivar Beakdansim tig00012399_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53587

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6--210	68	2.9	71	85	7	278	27	18	14	39	1.89
1--210	71	3.0	71	83	7	288	27	18	14	40	1.89
304--389	37	2.4	37	86	3	113	25	20	12	40	1.88
420--491	37	1.9	37	85	0	99	25	23	13	37	1.92
223--619	101	3.9	102	94	1	690	29	19	13	37	1.90
507--592	36	2.4	36	90	0	136	25	19	12	41	1.87
223--619	203	2.0	204	94	1	699	29	19	13	37	1.90
450--855	101	4.1	98	80	10	301	31	18	11	37	1.87
605--742	65	2.1	65	91	2	224	32	18	10	39	1.84
648--846	103	2.0	102	92	2	337	29	19	12	39	1.87
712--791	37	2.2	35	80	8	88	28	21	13	36	1.92
909--986	33	2.2	35	88	8	115	41	20	5	33	1.74
2835--2912	20	3.8	21	75	21	67	24	3	1	70	1.11
3028--3054	2	13.5	2	100	0	54	48	0	0	51	1.00
3168--3217	26	1.9	26	83	0	64	16	6	2	76	1.08
3223--3252	2	15.0	2	92	0	51	46	0	0	53	1.00
14473--14498	3	8.7	3	100	0	52	0	34	0	65	0.93
15845--15938	31	3.0	31	86	9	138	19	17	24	39	1.92
20247--20327	31	2.6	31	98	0	153	19	19	20	39	1.93
23483--23540	24	2.4	24	97	0	107	46	15	25	12	1.80
28203--28227	2	12.5	2	100	0	50	48	0	0	52	1.00
28696--28720	11	2.3	11	100	0	50	8	64	20	8	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31227--31384	21	7.8	20	71	9	79	37	25	17	19	1.93
31390--31582	20	9.6	20	76	12	164	35	24	18	21	1.95
31390--31580	40	4.8	40	88	1	215	35	24	18	21	1.95
31371--31582	60	3.5	59	78	6	203	36	25	18	19	1.95
32256--32302	24	2.0	24	87	8	69	25	14	21	38	1.92
32477--32501	12	2.1	12	100	0	50	72	0	28	0	0.86
34760--35183	70	6.2	67	78	12	331	45	17	22	14	1.85
34793--35161	19	21.4	19	75	20	375	45	17	22	14	1.84
34860--35143	84	3.3	83	82	10	324	45	16	22	14	1.84
34838--35183	103	3.4	103	85	9	310	45	16	23	14	1.84
34793--35183	51	7.6	50	82	12	268	45	17	22	14	1.84
35190--35305	52	2.2	53	98	1	225	13	23	18	44	1.85
35208--35305	19	5.4	19	84	13	143	14	21	17	46	1.83
35412--35448	14	2.6	14	91	0	65	45	21	0	32	1.52
36922--36973	19	3.0	18	76	21	58	48	19	21	11	1.80
36969--37045	19	4.3	19	76	17	83	9	14	29	46	1.75
36999--37045	20	2.4	19	89	3	67	10	14	29	44	1.79
37093--37466	93	4.1	93	97	1	700	45	19	12	22	1.83
39162--39218	14	3.7	14	75	20	60	42	24	24	8	1.83
39154--39237	33	2.5	33	96	0	159	45	21	23	9	1.81
39176--39259	19	4.7	19	81	14	106	44	22	22	10	1.84
39282--39354	21	3.5	21	83	3	103	12	24	17	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39434--39504	33	2.2	33	92	0	115	47	18	22	11	1.80
39686--39740	22	2.5	22	81	0	74	20	16	40	23	1.91
39887--40080	20	9.6	20	82	5	221	19	19	25	35	1.95
39887--40080	60	3.2	60	83	0	253	19	19	25	35	1.95
40067--40191	21	6.0	21	74	3	117	26	16	23	33	1.96
40067--40165	42	2.4	42	98	0	189	25	17	22	35	1.95
43120--43178	30	2.0	30	81	12	70	57	6	13	22	1.59
44543--44594	24	2.2	24	86	6	70	7	19	36	36	1.80
44611--44660	23	2.2	23	82	7	57	10	2	36	52	1.47
45087--45562	139	3.4	138	84	3	611	28	21	14	35	1.93
46565--46654	6	14.3	6	76	17	76	5	17	1	75	1.05
46564--46625	26	2.3	26	81	10	72	4	17	1	75	1.05
46561--46653	31	3.0	30	80	14	93	5	18	1	75	1.05

Tables:   1

The End!