genome.fa.s5408.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005408.1 Hibiscus syriacus cultivar Beakdansim tig00012400_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56376

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7110--7134	11	2.3	11	100	0	50	0	0	12	88	0.53
13378--13432	23	2.5	22	80	16	69	29	14	20	36	1.92
13849--13891	19	2.2	20	87	4	61	16	0	13	69	1.19
23486--23554	23	2.9	23	80	4	57	24	26	23	26	2.00
24011--24379	20	18.5	20	85	4	458	34	26	18	20	1.96
25053--25099	24	2.0	24	87	8	69	25	14	21	38	1.92
25274--25298	12	2.1	12	100	0	50	72	0	28	0	0.86
27601--27886	19	16.4	19	77	18	302	46	18	20	14	1.83
27601--27835	33	6.8	33	76	16	196	46	18	20	14	1.83
27629--27854	52	4.2	53	89	5	325	46	17	20	15	1.83
27629--27854	103	2.1	108	87	8	338	46	17	20	15	1.83
27668--27918	122	2.1	121	87	10	361	46	17	19	15	1.84
27601--27888	141	2.1	137	88	6	438	46	18	20	14	1.84
27847--27900	14	3.6	14	77	18	54	46	20	20	12	1.83
27915--28016	19	5.6	19	85	12	151	14	23	17	44	1.86
28122--28158	14	2.6	14	91	0	65	45	21	0	32	1.52
28153--28225	12	6.0	12	67	20	53	57	16	1	24	1.47
28139--28211	38	1.9	38	97	0	137	53	16	1	28	1.51
30080--30136	14	3.7	14	77	20	60	45	22	21	10	1.82
30061--30153	33	2.8	33	95	0	168	47	21	20	10	1.80
30024--30158	19	7.6	19	76	16	128	45	23	19	11	1.82
30154--30282	19	7.3	19	75	17	125	8	17	28	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30154--30245	33	2.8	33	93	3	150	7	18	28	45	1.76
30326--30610	92	3.1	93	97	2	549	46	18	12	22	1.82
32314--32403	14	5.7	14	74	23	81	42	23	25	8	1.83
32306--32420	33	3.5	33	95	0	212	45	20	24	9	1.81
32313--32425	19	6.8	18	72	23	88	43	22	24	9	1.83
32437--32491	14	3.6	14	73	21	56	9	27	23	40	1.85
32612--32682	33	2.2	33	94	0	124	47	16	23	11	1.79
32863--32917	22	2.5	22	81	0	74	20	16	40	23	1.91
33063--33256	20	9.6	20	82	5	221	19	19	25	35	1.95
33063--33256	60	3.2	60	83	0	253	19	19	25	35	1.95
33249--33325	21	3.7	20	70	13	57	27	16	23	32	1.96
33311--33362	20	2.6	20	96	0	95	21	13	26	38	1.90
36596--36643	17	2.8	17	87	6	71	27	27	29	16	1.97
42440--42482	20	2.2	20	91	0	68	34	16	20	27	1.94
42406--42693	77	3.7	77	90	0	450	29	14	19	36	1.92
42511--42552	20	2.1	20	95	0	75	30	16	23	28	1.96
42590--42628	20	2.0	20	89	0	60	28	7	25	38	1.83
42595--42636	20	2.1	20	86	0	57	30	11	23	33	1.91
42685--42736	20	2.6	20	81	0	68	19	19	19	42	1.90
42661--42736	40	1.9	40	86	10	111	25	17	17	40	1.90
45413--45447	18	1.9	18	88	0	52	51	8	14	25	1.70
46150--46231	43	1.9	43	87	0	119	28	15	20	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49123--49573	77	5.9	77	76	11	343	28	15	19	35	1.93
49308--49359	21	2.5	20	87	3	77	26	15	26	30	1.96
49352--49409	20	2.9	20	86	0	89	24	18	12	44	1.84
49469--49510	20	2.1	20	90	0	66	28	16	26	28	1.97
49487--49620	57	2.4	56	87	3	182	30	16	17	35	1.93
49622--49671	20	2.5	20	90	0	73	16	16	20	48	1.82
49662--49726	20	3.2	20	65	8	60	18	13	29	38	1.89
49657--49753	40	2.4	40	89	0	158	20	14	27	37	1.92
53923--53993	9	8.6	9	78	18	75	0	16	0	83	0.66
53929--53996	6	11.3	6	77	16	70	0	16	0	83	0.64
53924--53990	8	8.5	8	78	15	52	0	17	0	82	0.68
53922--53996	20	3.9	19	86	8	100	0	16	0	84	0.63
53938--53996	14	4.6	14	83	14	74	0	15	0	84	0.62
53923--53996	32	2.4	31	86	11	98	0	16	0	83	0.64
56139--56345	76	2.7	77	85	2	301	29	15	19	34	1.93
56324--56372	20	2.4	21	86	3	64	28	12	24	34	1.91
56324--56375	21	2.5	20	84	3	68	28	13	25	32	1.93

Tables:   1

The End!