Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005409.1 Hibiscus syriacus cultivar Beakdansim tig00012403_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72306

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6621--6647
13
2.1
13
100
0
54
51
7
11
29
1.64
8524--8571
2
24.5
2
95
4
89
50
0
0
50
1.00
8583--8622
19
2.1
19
85
0
53
55
0
0
45
0.99
9184--9394
106
2.0
108
86
4
302
38
10
16
34
1.83
11375--11456
31
2.6
31
96
0
146
24
12
12
51
1.73
23269--23340
25
2.7
28
85
12
107
31
13
8
45
1.74
24072--24182
21
5.3
21
85
2
161
24
17
26
32
1.96
24063--24179
41
2.8
41
88
1
135
23
17
25
33
1.96
24181--24219
20
2.0
20
100
0
78
10
25
20
43
1.83
24182--24225
20
2.2
20
91
0
70
13
27
20
38
1.90
24187--24247
22
2.9
22
78
9
65
13
24
22
39
1.90
24191--24254
22
3.0
21
73
13
60
15
21
21
40
1.91
25011--25076
19
3.3
19
70
12
60
45
21
15
18
1.85
25004--25097
41
2.3
41
92
0
161
41
23
15
19
1.90
25089--25161
20
3.6
19
73
10
65
41
23
19
16
1.90
25086--25186
41
2.5
41
95
3
177
38
23
17
19
1.93
25109--25182
21
3.6
21
74
3
87
35
25
17
21
1.95
26309--26358
23
2.2
22
92
3
82
42
6
6
46
1.53
26309--26358
22
2.2
23
89
3
75
42
6
6
46
1.53
29064--29148
24
3.5
24
72
4
82
61
16
11
10
1.57
29239--29284
21
2.1
23
88
8
69
36
6
13
43
1.69
29312--29345
14
2.4
14
85
0
50
55
20
11
11
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30943--30973
6
5.2
6
100
0
62
16
35
32
16
1.91
38014--38050
18
2.0
19
94
5
67
45
0
0
54
1.00
39038--39101
3
21.7
3
77
15
53
25
6
1
67
1.23
39416--39456
13
3.2
13
89
6
57
14
7
2
75
1.12
42818--43011
76
2.5
77
89
3
277
23
32
24
19
1.97
51248--51440
76
2.5
77
89
3
284
23
33
23
19
1.97
59435--59486
9
6.5
8
86
8
63
82
1
15
0
0.75
59431--59488
24
2.6
22
79
12
73
81
1
17
0
0.78
59431--59486
7
7.7
7
81
15
69
82
1
16
0
0.76
60605--60809
111
1.8
111
91
0
338
38
22
17
21
1.93
63088--63128
13
3.2
13
89
6
57
14
7
2
75
1.12
65288--65339
17
2.8
18
72
11
52
44
0
5
50
1.26
65953--66044
29
3.2
28
75
14
89
30
16
2
51
1.56
71123--71162
15
2.7
15
88
7
55
7
40
0
52
1.30

Tables:   1

The End!