Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000541.1 Hibiscus syriacus cultivar Beakdansim tig00001047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72817

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10893--10976
29
2.9
29
96
0
150
23
20
4
51
1.66
26024--26078
18
3.1
17
78
14
65
20
3
0
76
0.94
28121--28149
12
2.4
12
100
0
58
51
10
6
31
1.62
29098--29142
23
2.0
23
86
0
63
24
24
26
24
2.00
29118--29422
147
2.1
148
96
1
558
34
20
17
26
1.95
30475--30519
21
2.1
21
87
0
63
15
24
28
31
1.96
33654--33698
23
2.0
23
86
0
63
24
24
26
24
2.00
33674--33980
149
2.1
149
96
0
560
35
20
16
27
1.95
34697--34726
5
6.0
5
100
0
60
20
20
0
60
1.37
34895--34938
22
2.0
21
87
12
63
36
20
0
43
1.52
35607--35651
21
2.1
21
83
0
54
15
22
31
31
1.95
40070--40133
24
2.7
24
92
0
110
57
14
10
17
1.64
47559--47670
46
2.4
47
91
4
176
27
12
22
37
1.90
53109--53160
23
2.3
23
100
0
104
57
9
3
28
1.48
53150--53253
36
2.9
36
98
0
199
41
18
5
34
1.74
53827--53863
10
3.5
11
85
7
51
45
0
54
0
1.00
56673--56750
3
26.0
3
100
0
156
33
0
0
66
0.92
59164--59192
2
14.5
2
100
0
58
51
0
0
48
1.00
60248--60285
20
1.9
20
88
0
58
57
0
2
39
1.12
64787--64856
12
5.8
12
70
12
54
52
15
15
15
1.74
64788--64893
48
2.2
48
81
6
117
50
15
16
17
1.79
64786--64893
24
4.5
24
72
15
89
49
15
16
18
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66448--66486
18
2.2
18
86
4
53
38
12
7
41
1.72

Tables:   1

The End!