Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005410.1 Hibiscus syriacus cultivar Beakdansim tig00012405_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65403

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
602--646
22
2.0
22
86
0
63
6
15
0
77
0.96
612--689
34
2.3
32
80
8
84
5
17
1
75
1.05
590--721
9
15.4
8
73
17
72
6
17
0
75
1.07
10303--10401
45
2.1
48
87
7
141
41
19
10
29
1.84
17269--17337
18
3.9
18
81
5
79
40
10
5
43
1.62
23364--23397
13
2.6
13
90
9
52
47
5
17
29
1.71
23879--23933
23
2.5
22
91
5
92
27
23
34
14
1.94
23882--23939
23
2.5
23
91
0
89
27
20
36
15
1.93
29579--29631
21
2.5
21
90
6
81
26
24
32
16
1.97
31519--31548
15
1.9
16
93
6
53
36
3
20
40
1.69
38000--38030
6
5.2
6
100
0
62
35
48
16
0
1.46
38032--38061
5
6.0
5
96
0
51
23
36
40
0
1.55
38027--38061
15
2.3
15
85
0
52
25
34
37
2
1.71
45378--45770
193
2.0
193
96
0
723
27
15
22
35
1.94
61953--61995
18
2.4
18
88
0
59
72
0
4
23
1.04
63879--63994
60
1.9
60
96
0
214
31
26
5
37
1.78

Tables:   1

The End!