genome.fa.s5411.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005411.1 Hibiscus syriacus cultivar Beakdansim tig00012409_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70920

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3986--4037	24	2.2	24	82	6	61	34	15	21	28	1.94
4885--4974	40	2.2	41	88	2	128	18	5	18	56	1.60
5173--5230	23	2.5	23	81	13	66	50	1	0	48	1.11
5199--5277	28	3.0	28	82	10	87	49	2	0	48	1.14
5352--5407	26	2.2	26	81	12	62	51	1	1	44	1.22
5427--5473	22	2.1	23	92	4	78	57	0	0	42	0.98
5750--5818	15	4.7	15	76	5	52	40	13	0	46	1.43
5751--5812	29	2.1	29	81	0	70	40	14	0	45	1.45
6588--6638	19	2.6	19	87	3	66	33	31	13	21	1.92
6649--6695	17	2.5	20	73	20	55	44	19	17	19	1.87
6796--7059	146	1.8	146	89	1	422	26	17	19	36	1.94
6929--7217	104	2.8	104	74	13	295	30	19	19	31	1.96
7430--7494	20	3.2	20	77	0	76	26	13	13	46	1.81
7432--7513	40	2.0	40	86	4	112	26	15	13	43	1.84
7483--7613	60	2.2	59	78	9	140	16	16	21	46	1.84
7511--7615	20	5.3	20	84	5	133	13	15	22	48	1.79
9323--9377	22	2.5	22	81	0	65	23	21	20	34	1.97
23246--23293	13	3.8	12	82	15	53	43	6	0	50	1.27
23940--23978	21	1.9	21	89	5	62	46	2	10	41	1.51
36144--36300	78	2.0	78	91	4	255	29	14	21	33	1.93
36758--36803	23	2.0	22	83	4	56	58	8	0	32	1.28
41863--41907	21	2.1	21	91	0	72	51	0	13	35	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41987--42025	18	2.0	20	85	9	55	53	2	2	41	1.28
43264--43307	23	1.9	23	86	9	63	50	13	13	22	1.77
54634--54684	24	2.2	23	85	3	66	45	7	0	47	1.32
54687--54740	2	27.5	2	96	3	101	50	0	0	50	1.00

Tables:   1

The End!