Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005412.1 Hibiscus syriacus cultivar Beakdansim tig00012410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53666
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Found at i:129 original size:62 final size:60
Alignment explanation
Indices: 32--153 Score: 226
Period size: 62 Copynumber: 2.0 Consensus size: 60
22 AAAGAAATAT
32 ATTTTTGTAACGGTAAGGGAATGGTAATACAAATTAAGGTGGTCCAAAGAAGCAAGCATGGG
1 ATTTTTGTAACGGTAAGGGAATGGTAATACAAATTAAGGTGG-CC-AAGAAGCAAGCATGGG
94 ATTTTTGTAACGGTAAGGGAATGGTAATACAAATTAAGGTGGCCAAGAAGCAAGCATGGG
1 ATTTTTGTAACGGTAAGGGAATGGTAATACAAATTAAGGTGGCCAAGAAGCAAGCATGGG
154 GCGCAGCATT
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
60 16 0.27
61 2 0.03
62 42 0.70
ACGTcount: A:0.37, C:0.10, G:0.30, T:0.24
Consensus pattern (60 bp):
ATTTTTGTAACGGTAAGGGAATGGTAATACAAATTAAGGTGGCCAAGAAGCAAGCATGGG
Found at i:10761 original size:32 final size:29
Alignment explanation
Indices: 10725--10783 Score: 82
Period size: 32 Copynumber: 1.9 Consensus size: 29
10715 TCATAGTGAC
*
10725 TATTTTATAACTAGTTTAATAAATTTAATGTT
1 TATTTTATAA-TA-TTTAA-AAATCTAATGTT
10757 TATTTTATAATATTTAAAAATCTAATG
1 TATTTTATAATATTTAAAAATCTAATG
10784 ACCGAACAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 9 0.35
30 5 0.19
31 2 0.08
32 10 0.38
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (29 bp):
TATTTTATAATATTTAAAAATCTAATGTT
Found at i:16105 original size:32 final size:32
Alignment explanation
Indices: 16064--16128 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
16054 ACTTAAAATA
16064 ATGTTTAGTATGAGTTTGGAGTATTTTTTTGT
1 ATGTTTAGTATGAGTTTGGAGTATTTTTTTGT
16096 ATGTTTAGTATGAGTTTGGAGTATTTTTTTGT
1 ATGTTTAGTATGAGTTTGGAGTATTTTTTTGT
16128 A
1 A
16129 ATGTAACATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.20, C:0.00, G:0.25, T:0.55
Consensus pattern (32 bp):
ATGTTTAGTATGAGTTTGGAGTATTTTTTTGT
Found at i:16140 original size:31 final size:31
Alignment explanation
Indices: 16073--16141 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 31
16063 AATGTTTAGT
**
16073 ATGAGTTTGGAGTATTTTTTTGTATGTTTAGT
1 ATGAGTTTGGAGTATTTTTTTGTATG-TTAAC
16105 ATGAGTTTGGAGTATTTTTTTGTAATG-TAAC
1 ATGAGTTTGGAGTATTTTTTTGT-ATGTTAAC
16136 ATGAGT
1 ATGAGT
16142 ATCGATACCA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
31 8 0.24
32 23 0.68
33 3 0.09
ACGTcount: A:0.23, C:0.01, G:0.25, T:0.51
Consensus pattern (31 bp):
ATGAGTTTGGAGTATTTTTTTGTATGTTAAC
Found at i:16280 original size:21 final size:21
Alignment explanation
Indices: 16228--16274 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
16218 GTTTCTAGAT
*
16228 TCGCAACGCGAATTTCGACTA
1 TCGCAACGCGAACTTCGACTA
16249 TCGCAACGCGAACTTCGACTA
1 TCGCAACGCGAACTTCGACTA
16270 TCGCA
1 TCGCA
16275 TTGCGATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (21 bp):
TCGCAACGCGAACTTCGACTA
Found at i:16299 original size:21 final size:21
Alignment explanation
Indices: 16270--16383 Score: 81
Period size: 21 Copynumber: 5.6 Consensus size: 21
16260 ACTTCGACTA
*
16270 TCGCATTGCGATTTTCCAAAT
1 TCGCGTTGCGATTTTCCAAAT
* * *
16291 TCGTGTTGCGA-TTTACATAT
1 TCGCGTTGCGATTTTCCAAAT
* ** *
16311 TCGCATTGCGATAGTCCAAGT
1 TCGCGTTGCGATTTTCCAAAT
* ** ** *
16332 TCGCATTGCGATAGTCGGAGT
1 TCGCGTTGCGATTTTCCAAAT
16353 TCGCGTTGCGATTTTCCAAAT
1 TCGCGTTGCGATTTTCCAAAT
16374 T--CGTTGCGAT
1 TCGCGTTGCGAT
16384 AGTTGAAGTT
Statistics
Matches: 73, Mismatches: 19, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
19 9 0.12
20 16 0.22
21 48 0.66
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (21 bp):
TCGCGTTGCGATTTTCCAAAT
Found at i:16402 original size:21 final size:21
Alignment explanation
Indices: 16310--16442 Score: 103
Period size: 21 Copynumber: 6.5 Consensus size: 21
16300 GATTTACATA
*
16310 TTCGCATTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
* **
16331 TTCGCATTGCGATAGTCGGAG
1 TTCGCGTTGCGATAGTCCAAG
** *
16352 TTCGCGTTGCGATTTTCCAAA
1 TTCGCGTTGCGATAGTCCAAG
**
16373 TT--CGTTGCGATAGTTGAAG
1 TTCGCGTTGCGATAGTCCAAG
* * *
16392 TTCGTGTTGCGAT-TTACATA-
1 TTCGCGTTGCGATAGTCCA-AG
* *
16412 TTCGCATTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
16433 TTCGCGTTGC
1 TTCGCGTTGC
16443 CCAAAATCGC
Statistics
Matches: 84, Mismatches: 23, Indels: 10
0.72 0.20 0.09
Matches are distributed among these distances:
19 14 0.17
20 14 0.17
21 56 0.67
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.35
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCCAAG
Found at i:17297 original size:21 final size:20
Alignment explanation
Indices: 17268--17339 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 20
17258 GCGATTTTGG
*
17268 GCAACGCGAACTTCGACTATC
1 GCAATGCGAACTTCGA-TATC
*
17289 GCAATGCGAA-TAT-GTAAATC
1 GCAATGCGAACT-TCG-ATATC
*
17309 GCAAAGCGAACTTCGATTATC
1 GCAATGCGAACTTCGA-TATC
17330 GCAATGCGAA
1 GCAATGCGAA
17340 TATGTAAATC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
20 16 0.39
21 25 0.61
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.21
Consensus pattern (20 bp):
GCAATGCGAACTTCGATATC
Found at i:17311 original size:20 final size:21
Alignment explanation
Indices: 17286--17376 Score: 82
Period size: 20 Copynumber: 4.4 Consensus size: 21
17276 AACTTCGACT
17286 ATCGCAATGCGAATAT-GTAA
1 ATCGCAATGCGAATATCGTAA
* *
17306 ATCGCAAAGCGAACT-TCG-ATT
1 ATCGCAATGCGAA-TATCGTA-A
17327 ATCGCAATGCGAATAT-GTAA
1 ATCGCAATGCGAATATCGTAA
* * * *
17347 ATCGCAACGCGAATTTGGAAA
1 ATCGCAATGCGAATATCGTAA
17368 ATCGCAATG
1 ATCGCAATG
17377 TGATAGTCGA
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
20 30 0.53
21 27 0.47
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (21 bp):
ATCGCAATGCGAATATCGTAA
Found at i:17330 original size:41 final size:41
Alignment explanation
Indices: 17268--17359 Score: 166
Period size: 41 Copynumber: 2.2 Consensus size: 41
17258 GCGATTTTGG
17268 GCAACGCGAACTTCGACTATCGCAATGCGAATATGTAAATC
1 GCAACGCGAACTTCGACTATCGCAATGCGAATATGTAAATC
* *
17309 GCAAAGCGAACTTCGATTATCGCAATGCGAATATGTAAATC
1 GCAACGCGAACTTCGACTATCGCAATGCGAATATGTAAATC
17350 GCAACGCGAA
1 GCAACGCGAA
17360 TTTGGAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.21
Consensus pattern (41 bp):
GCAACGCGAACTTCGACTATCGCAATGCGAATATGTAAATC
Found at i:17372 original size:41 final size:41
Alignment explanation
Indices: 17268--17376 Score: 164
Period size: 41 Copynumber: 2.7 Consensus size: 41
17258 GCGATTTTGG
*
17268 GCAACGCGAACTTCGACTATCGCAATGCGAATATGTAAATC
1 GCAACGCGAACTTCGAATATCGCAATGCGAATATGTAAATC
* *
17309 GCAAAGCGAACTTCGATTATCGCAATGCGAATATGTAAATC
1 GCAACGCGAACTTCGAATATCGCAATGCGAATATGTAAATC
* * *
17350 GCAACGCGAATTTGGAAAATCGCAATG
1 GCAACGCGAACTTCGAATATCGCAATG
17377 TGATAGTCGA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (41 bp):
GCAACGCGAACTTCGAATATCGCAATGCGAATATGTAAATC
Found at i:17942 original size:26 final size:26
Alignment explanation
Indices: 17911--17996 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
17901 AAAAAGTCTA
17911 ATTAATAATTATTAATTTCCTAATTT
1 ATTAATAATTATTAATTTCCTAATTT
** ** **
17937 ATTAATTTTTATTAATTTATTAATAA
1 ATTAATAATTATTAATTTCCTAATTT
* * *
17963 ATTATTGATTAATAATTATCACTAATTT
1 ATTAATAATTATTAATT-TC-CTAATTT
17991 ATTAAT
1 ATTAAT
17997 TTTTTAATAT
Statistics
Matches: 43, Mismatches: 15, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
26 33 0.77
27 1 0.02
28 9 0.21
ACGTcount: A:0.41, C:0.05, G:0.01, T:0.53
Consensus pattern (26 bp):
ATTAATAATTATTAATTTCCTAATTT
Found at i:17952 original size:18 final size:18
Alignment explanation
Indices: 17931--17997 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
17921 ATTAATTTCC
*
17931 TAATTTATTAATTTTTAT
1 TAATTTATTAATTATTAT
*
17949 TAATTTATTAATAAATTAT
1 TAATTTATTAAT-TATTAT
* * * *
17968 TGA-TTAATAATTATCAC
1 TAATTTATTAATTATTAT
17985 TAATTTATTAATT
1 TAATTTATTAATT
17998 TTTTAATATA
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
17 5 0.13
18 27 0.71
19 6 0.16
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.55
Consensus pattern (18 bp):
TAATTTATTAATTATTAT
Found at i:29100 original size:21 final size:20
Alignment explanation
Indices: 29076--29115 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
29066 AAAAATTTAT
29076 AGTTATCCAAGTTGCTATTTG
1 AGTTATCCAAGTTG-TATTTG
* *
29097 AGTTATTCGAGTTGTATTT
1 AGTTATCCAAGTTGTATTT
29116 TATAACTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.10, G:0.20, T:0.47
Consensus pattern (20 bp):
AGTTATCCAAGTTGTATTTG
Found at i:35281 original size:13 final size:13
Alignment explanation
Indices: 35252--35286 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
35242 ATAACTAATA
*
35252 ATATTAAAT-ATT
1 ATATTAAATAAAT
35264 ATATTAAATAAAT
1 ATATTAAATAAAT
35277 ATATTAAATA
1 ATATTAAATA
35287 TATTTATGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
ATATTAAATAAAT
Found at i:38294 original size:8 final size:8
Alignment explanation
Indices: 38281--38321 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
38271 CTCATTTTCA
38281 GAGAATTT
1 GAGAATTT
38289 GAGAATTT
1 GAGAATTT
*
38297 -AGAGTTT
1 GAGAATTT
*
38304 GGGAATTT
1 GAGAATTT
38312 GAGAATTT
1 GAGAATTT
38320 GA
1 GA
38322 AAGATTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (8 bp):
GAGAATTT
Found at i:38639 original size:126 final size:126
Alignment explanation
Indices: 38389--38869 Score: 908
Period size: 126 Copynumber: 3.8 Consensus size: 126
38379 CTATAATCGG
*
38389 TTCACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGT
1 TTCACTATTCACGTGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATA--T
38454 TATCATTGCCCTATTATGTCATTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTAT
64 TATCATTGCCCTATTATGTCATTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTAT
*
38517 TTCACTATTCACGTGAAGGAGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATTA
1 TTCACTATTCACGTGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATTA
38582 TCATTGCCCTATTATGTCATTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTAT
66 TCATTGCCCTATTATGTCATTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTAT
38643 TTCACTATTCACGTGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATTA
1 TTCACTATTCACGTGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATTA
*
38708 TCATTGTCCTATTATGTCATTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTAT
66 TCATTGCCCTATTATGTCATTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTAT
38769 TTCACTATTCACGTGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATTA
1 TTCACTATTCACGTGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATTA
*
38834 TCATTGCCCTATTATGTCACTCATGTCCCTCGGGGA
66 TCATTGCCCTATTATGTCATTCATGTCCCTCGGGGA
38870 ATAACTTAAA
Statistics
Matches: 347, Mismatches: 6, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
126 287 0.83
128 60 0.17
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (126 bp):
TTCACTATTCACGTGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATTA
TCATTGCCCTATTATGTCATTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTAT
Found at i:39955 original size:21 final size:21
Alignment explanation
Indices: 39867--39960 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
39857 TATGGTATAA
*
39867 AACCCTGCGGGCTAGGCATGT
1 AACCCTGCGGGCTAGGAATGT
*
39888 AA-CCTGGCGGGCTAGGCATGT
1 AACCCT-GCGGGCTAGGAATGT
39909 AA-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGAATGT
*
39930 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGAATGT
39951 AACCCTGCGG
1 AACCCTGCGG
39961 AGATGGCATA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
20 3 0.04
21 63 0.91
22 3 0.04
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:39990 original size:21 final size:21
Alignment explanation
Indices: 39964--40011 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
39954 CCTGCGGAGA
*
39964 TGGCATATAAACTGGTGGGCT
1 TGGCATATAAACTGGAGGGCT
* *
39985 TGGCATATGAAGTGGAGGGCT
1 TGGCATATAAACTGGAGGGCT
*
40006 GGGCAT
1 TGGCAT
40012 GTACCCCTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.12, G:0.40, T:0.25
Consensus pattern (21 bp):
TGGCATATAAACTGGAGGGCT
Found at i:41774 original size:34 final size:31
Alignment explanation
Indices: 41729--41816 Score: 95
Period size: 31 Copynumber: 2.7 Consensus size: 31
41719 TTAATAATTC
*
41729 TAAATAAATAATAATTATATAAATATTATTTTAA
1 TAAAAAAATAATAATTATATAAATA-TA--TTAA
* *
41763 TAAAAAAATAATATTTACATAAATATATTAA
1 TAAAAAAATAATAATTATATAAATATATTAA
* * *
41794 TATAAAAATAATAACTATTTAAA
1 TAAAAAAATAATAATTATATAAA
41817 AAAATACTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
31 22 0.48
33 2 0.04
34 22 0.48
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (31 bp):
TAAAAAAATAATAATTATATAAATATATTAA
Found at i:41806 original size:31 final size:33
Alignment explanation
Indices: 41729--41807 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 33
41719 TTAATAATTC
* *
41729 TAAATAAATAATAATTATATAAATATTATTTTAA
1 TAAAAAAATAATAATTACATAAATATTA-TTTAA
*
41763 TAAAAAAATAATATTTACATAAATA-TA-TTAA
1 TAAAAAAATAATAATTACATAAATATTATTTAA
*
41794 TATAAAAATAATAA
1 TAAAAAAATAATAA
41808 CTATTTAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
31 16 0.40
33 2 0.05
34 22 0.55
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (33 bp):
TAAAAAAATAATAATTACATAAATATTATTTAA
Found at i:41832 original size:33 final size:34
Alignment explanation
Indices: 41762--41837 Score: 95
Period size: 33 Copynumber: 2.3 Consensus size: 34
41752 TATTATTTTA
* * *
41762 ATAAAAA-AATAATATTTACATAAATATATTAAT
1 ATAAAAATAATAATATTTACATAAAAATACTAAC
41795 ATAAAAATAATAACTATTTA-A-AAAAATACTAAC
1 ATAAAAATAATAA-TATTTACATAAAAATACTAAC
41828 ATAAAAATAA
1 ATAAAAATAA
41838 ATTTCTTACC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 26 0.68
34 6 0.16
35 6 0.16
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.30
Consensus pattern (34 bp):
ATAAAAATAATAATATTTACATAAAAATACTAAC
Found at i:44490 original size:2 final size:2
Alignment explanation
Indices: 44485--44515 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
44475 ATTAACTACA
44485 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
44516 ATGTTTCGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:48218 original size:15 final size:16
Alignment explanation
Indices: 48180--48220 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
48170 ACATAGCCTC
*
48180 TGAATCATTCAGCATT
1 TGAATCATTCAGCACT
*
48196 TGAATCATTCAGCGCT
1 TGAATCATTCAGCACT
48212 T-AATCATTC
1 TGAATCATTC
48221 TGAAATAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (16 bp):
TGAATCATTCAGCACT
Done.