genome.fa.s5413.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005413.1 Hibiscus syriacus cultivar Beakdansim tig00012411_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60114

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14140--14380	41	5.9	41	75	12	192	29	15	22	31	1.95
14146--14456	81	3.8	81	86	5	373	29	16	22	31	1.96
14323--14455	41	3.3	40	68	17	112	28	18	23	29	1.98
15923--16142	43	5.1	43	81	2	174	30	21	20	27	1.98
15923--16142	86	2.6	85	80	6	221	30	21	20	27	1.98
18036--18089	22	2.7	19	81	15	72	70	5	9	14	1.31
18039--18086	22	2.2	22	96	0	87	72	4	8	14	1.23
18743--18781	19	1.9	19	85	10	51	69	0	15	15	1.20
20185--20301	56	2.1	56	98	0	225	35	8	17	37	1.81
28079--28130	21	2.5	21	96	0	95	23	19	9	48	1.78
28092--28137	21	2.2	21	88	0	65	21	17	10	50	1.77
31219--31261	20	2.2	20	86	0	59	30	20	16	32	1.95
38964--39006	20	2.2	20	86	0	59	30	20	16	32	1.95
38216--39826	803	2.0	804	92	0	2693	30	23	18	27	1.98
41153--41276	64	1.9	65	88	4	189	57	14	0	28	1.38
41214--41323	19	5.8	19	70	16	59	57	13	0	29	1.37
41225--41272	25	2.0	24	83	4	60	60	14	0	25	1.34
41252--41313	32	1.9	32	84	12	83	62	11	0	25	1.28
41221--41368	76	2.0	75	86	6	210	57	11	0	30	1.39
45948--45973	4	6.5	4	100	0	52	53	0	0	46	1.00
46563--46681	64	1.9	63	89	5	186	55	14	0	30	1.39
46604--46778	76	2.3	75	81	5	192	57	10	1	31	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52726--52754	15	1.9	15	100	0	58	62	3	27	6	1.37
54537--54641	36	2.9	36	88	1	140	34	20	22	21	1.97
55288--55348	23	2.7	23	86	0	95	27	27	26	18	1.98
55994--56149	63	2.5	64	83	5	165	28	19	17	33	1.95
56029--56149	64	1.9	63	87	1	179	28	18	18	35	1.94

Tables:   1

The End!