Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005415.1 Hibiscus syriacus cultivar Beakdansim tig00012420_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147792

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107--246
62
2.2
62
87
5
201
32
25
17
25
1.97
15--342
165
2.0
165
88
5
493
33
24
17
24
1.96
167--359
103
1.9
102
84
3
262
31
24
18
25
1.98
545--899
82
4.4
81
77
9
271
30
23
19
26
1.98
6462--6494
2
16.5
2
100
0
66
48
0
0
51
1.00
7150--7196
2
23.5
2
95
0
85
53
0
0
46
1.00
8507--8635
64
2.0
63
96
1
240
38
13
17
29
1.89
11895--11965
37
1.9
37
100
0
142
30
11
12
45
1.77
14952--15065
31
3.7
31
83
5
142
21
14
7
56
1.63
21311--21345
3
12.0
3
87
6
54
31
2
0
65
1.07
23050--23088
16
2.5
15
76
8
51
61
5
7
25
1.44
23695--24000
152
2.0
154
91
1
499
49
10
10
29
1.71
25201--26023
128
6.4
128
79
5
759
29
18
25
25
1.98
25338--26059
385
1.9
384
88
2
1099
29
19
26
24
1.98
26099--26235
67
2.1
65
88
2
202
45
15
10
28
1.78
29827--29898
2
36.0
2
97
0
135
50
1
0
48
1.09
30851--30919
27
2.6
27
88
4
95
55
10
18
15
1.68
30871--30931
12
4.8
12
80
11
68
52
9
21
16
1.72
30851--30932
12
6.2
13
73
16
62
53
10
19
15
1.71
33136--33440
152
2.0
154
93
1
524
48
10
11
29
1.71
33974--34365
186
2.1
186
92
1
644
42
2
7
46
1.46
34974--34998
13
1.9
13
100
0
50
8
32
40
20
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37971--40165
733
3.0
733
98
0
4291
31
14
22
31
1.94
47854--47887
16
2.1
16
94
0
59
32
26
8
32
1.87
48336--48365
15
2.0
15
93
0
51
46
16
6
30
1.73
59092--59136
20
2.2
20
88
7
65
71
2
6
20
1.20
59419--59455
19
1.9
19
100
0
74
21
21
45
10
1.82
60816--61174
106
3.5
106
83
9
470
21
17
25
35
1.95
60971--61167
99
2.0
98
88
2
295
19
18
24
37
1.94
62303--62346
7
6.0
7
94
5
70
0
13
4
81
0.83
62301--62345
8
5.9
8
84
10
58
0
13
4
82
0.82
62383--62418
16
2.2
16
90
9
56
0
11
2
86
0.68
62311--62454
75
2.0
72
84
6
191
11
20
10
57
1.62
73518--73557
21
1.9
21
89
0
62
25
40
25
10
1.86
82684--82717
3
11.0
3
87
6
50
64
0
2
32
1.08
82733--82777
20
2.3
20
88
3
74
68
4
6
20
1.29
85676--85738
2
31.5
2
100
0
126
50
0
49
0
1.00
86535--86561
2
13.5
2
100
0
54
48
0
0
51
1.00
88479--88542
25
2.6
25
97
2
121
54
0
9
35
1.33
93653--93756
28
3.7
28
91
5
174
30
15
12
41
1.84
94893--94977
24
4.0
22
74
15
81
32
18
22
25
1.97
96395--96515
57
2.1
57
98
0
233
23
14
19
42
1.87
99475--99534
30
2.0
30
96
0
111
45
16
18
20
1.86
114125--114155
2
15.5
2
100
0
62
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114353--114420
3
22.7
3
100
0
136
66
0
0
33
0.92
120031--120062
15
2.1
15
94
0
55
6
25
15
53
1.65
122347--122384
19
2.0
19
85
10
51
52
13
0
34
1.40
123094--123324
43
5.3
42
72
14
134
28
19
20
31
1.97
123661--123790
21
6.2
21
85
1
109
1
39
20
39
1.62
132818--132978
41
4.0
41
84
7
213
30
19
14
34
1.92
132819--132977
82
2.0
81
92
3
266
30
20
14
35
1.92
132964--133188
42
5.4
42
75
9
167
24
20
20
33
1.97
141635--142016
178
2.1
180
90
5
594
42
2
9
45
1.50
142047--142077
11
2.8
11
100
0
62
38
25
16
19
1.92
143726--143751
13
2.0
13
100
0
52
46
30
7
15
1.74
146428--146452
2
12.5
2
100
0
50
0
48
0
52
1.00

Tables:   1

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