genome.fa.s5416.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005416.1 Hibiscus syriacus cultivar Beakdansim tig00012424_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61622

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4378--4411	16	2.1	17	88	5	52	41	17	2	38	1.65
5112--5181	21	3.2	20	73	15	59	40	24	12	22	1.89
5227--5275	23	2.2	23	88	3	73	34	22	14	28	1.93
6175--6228	21	2.6	21	80	13	60	31	24	11	33	1.90
9493--9548	21	2.7	21	77	0	67	32	30	19	17	1.95
9565--9644	42	1.9	42	84	0	106	38	21	15	25	1.92
16056--16117	23	2.9	21	80	7	72	20	37	25	16	1.93
19943--19982	20	2.0	20	90	4	64	55	7	0	37	1.29
22994--23051	20	2.9	20	92	0	89	20	25	36	17	1.94
23083--23150	20	3.7	20	73	18	74	16	27	38	17	1.91
23088--23157	35	2.0	35	97	0	131	15	28	35	20	1.93
23347--23391	19	2.3	20	88	3	65	53	6	2	37	1.40
24605--24643	18	2.2	18	90	0	60	35	17	0	46	1.49
26521--26562	21	2.0	21	86	4	59	19	26	38	16	1.92
27932--27975	23	2.0	22	82	8	54	27	11	0	61	1.30
29925--29966	20	2.1	20	95	0	75	14	26	42	16	1.86
30228--30267	20	2.0	20	90	4	64	55	7	0	37	1.29
33672--33711	20	2.0	20	90	4	64	55	7	0	37	1.29
37133--37175	19	2.2	20	87	4	61	53	4	2	39	1.34
39339--39386	24	2.0	23	88	4	69	47	0	2	50	1.12
42653--42686	16	2.1	16	88	0	50	50	0	2	47	1.16
42726--42759	16	2.0	18	88	11	54	26	2	5	64	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43227--43473	129	1.9	130	91	0	406	35	12	15	36	1.86
43869--43944	35	2.2	35	92	0	125	35	1	23	39	1.63
54521--54569	25	2.0	26	84	8	66	46	0	16	36	1.47
57987--58035	22	2.3	22	89	3	73	32	26	14	26	1.94
61372--61402	14	2.2	14	94	0	53	32	16	32	19	1.94
61401--61438	14	2.7	14	91	0	58	26	21	28	23	1.99

Tables:   1

The End!