genome.fa.s5417.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005417.1 Hibiscus syriacus cultivar Beakdansim tig00012427_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80564

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6093--6132	21	1.9	21	89	0	62	37	5	2	55	1.35
6158--6202	20	2.2	20	88	0	63	66	6	8	17	1.40
10731--10793	27	2.2	28	81	13	76	57	1	0	41	1.08
10747--10808	27	2.3	28	81	13	76	58	1	3	37	1.24
13755--13798	21	2.1	21	100	0	88	27	4	18	50	1.66
25717--25847	60	2.2	60	82	5	149	36	13	3	45	1.62
26782--26820	21	1.9	21	89	5	62	17	25	23	33	1.96
26783--26881	10	10.3	9	72	12	63	18	28	24	29	1.98
26783--26881	29	3.4	29	79	8	103	18	28	24	29	1.98
26782--26879	19	5.1	20	76	17	64	19	26	24	29	1.98
26877--26915	17	2.3	17	100	0	78	17	46	23	12	1.83
28463--28607	60	2.4	60	81	5	150	37	14	1	46	1.53
28960--29018	3	20.0	3	96	3	111	67	0	0	32	0.91
29017--29058	3	14.0	3	100	0	84	33	0	0	66	0.92
38626--38660	18	1.9	18	88	0	52	54	0	17	28	1.43
39783--39821	12	3.3	12	82	7	53	15	17	20	46	1.84
39787--39827	12	3.5	11	83	9	55	14	17	19	48	1.81
40018--40082	2	32.0	2	89	3	94	47	1	1	49	1.20
42045--42091	18	2.6	18	93	0	85	17	46	21	14	1.83
43411--43445	18	1.9	18	88	0	52	54	0	17	28	1.43
44544--44607	23	2.7	23	80	2	74	20	15	18	45	1.86
44530--44637	47	2.3	48	80	6	121	21	12	18	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44544--44639	24	4.0	24	76	8	81	20	11	18	48	1.79
44821--44860	2	20.0	2	100	0	80	50	0	0	50	1.00
46839--46880	13	3.2	13	82	0	57	19	42	16	21	1.89
48182--48219	18	2.1	18	90	0	58	52	0	18	28	1.45
49319--49403	12	7.3	11	70	17	55	20	15	16	48	1.81
49316--49403	24	3.7	23	79	7	88	20	14	17	47	1.82
49302--49411	24	4.6	24	74	8	84	20	15	17	46	1.84
49593--49648	2	29.0	2	92	7	98	48	0	0	51	1.00
69062--69156	48	2.0	48	91	0	154	32	13	16	36	1.88
74403--74454	24	2.2	24	82	6	61	34	15	21	28	1.94
75308--75399	42	2.2	41	86	1	121	19	5	18	56	1.60
75593--75655	23	2.6	24	78	19	60	50	1	0	47	1.10
75621--75743	31	4.1	30	70	22	82	47	1	0	49	1.16
75854--75900	22	2.1	23	92	4	78	57	0	0	42	0.98
76182--76243	29	2.1	29	81	0	70	40	16	1	41	1.57
77018--77068	19	2.6	19	87	3	66	33	31	13	21	1.92
77079--77125	17	2.5	20	73	20	55	44	19	17	19	1.87
77226--77488	145	1.8	145	89	1	420	26	17	19	36	1.94
77381--77689	104	3.0	101	74	11	293	29	18	19	33	1.95
77358--77646	104	2.8	104	74	13	295	30	19	19	31	1.96
77860--77924	20	3.2	20	77	0	76	26	13	13	46	1.81
77862--77943	40	2.0	40	86	4	112	26	15	13	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77913--78043	60	2.2	59	78	9	140	16	16	21	46	1.84
77941--78045	20	5.3	20	84	5	133	13	15	22	48	1.79
78570--78614	15	2.9	16	83	9	58	66	4	2	26	1.22
79764--79820	22	2.5	22	80	5	60	24	21	19	35	1.96

Tables:   1

The End!