Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005418.1 Hibiscus syriacus cultivar Beakdansim tig00012430_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54273

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14442--14606
31
5.3
31
77
0
168
15
24
29
30
1.96
14442--14592
62
2.4
62
79
0
185
15
25
29
29
1.96
23732--23771
21
1.9
21
85
10
55
37
5
2
55
1.35
25852--25898
22
2.1
23
88
4
69
44
2
0
53
1.12
25837--25925
30
2.8
32
77
14
87
47
2
0
50
1.13
28106--28146
22
1.9
22
90
5
66
31
0
0
68
0.90
28424--28458
11
3.3
11
88
8
54
57
2
0
40
1.14
28660--28716
23
2.5
24
85
5
82
59
1
0
38
1.08
29934--29973
14
2.7
15
88
7
55
15
7
17
60
1.57
30458--30501
17
2.6
17
96
0
79
54
36
9
0
1.32
31482--31552
7
9.5
8
71
11
53
28
2
0
69
1.03
31482--31519
15
2.5
15
83
12
51
26
0
0
73
0.83
31584--31675
10
9.3
9
69
21
60
23
4
2
69
1.17
31585--31689
19
5.3
19
73
13
70
22
3
1
71
1.12
31617--31660
22
2.1
20
83
8
52
22
6
0
70
1.11
31652--31722
36
2.0
35
83
2
88
22
2
4
70
1.18
35558--35818
95
2.7
97
85
8
327
34
17
15
31
1.92
36726--37028
110
2.8
110
88
2
434
35
22
17
24
1.95
36944--37095
67
2.3
67
89
2
234
31
23
18
26
1.97
36836--37205
177
2.1
177
90
0
578
34
23
17
24
1.96
37013--37215
110
1.8
110
87
2
300
32
23
19
25
1.98
37689--37838
36
4.1
36
89
4
239
26
22
15
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37788--37938
67
2.2
67
87
6
207
29
20
12
37
1.90
39086--39133
2
24.0
2
100
0
96
50
0
0
50
1.00
39531--39576
18
2.6
18
75
24
53
26
2
0
71
0.97
39545--39603
21
2.7
21
80
15
66
25
5
1
67
1.20
39587--39703
3
35.7
3
73
19
58
26
5
1
66
1.22
39532--39604
22
3.6
21
80
10
71
27
4
1
67
1.17
39637--39758
44
2.7
44
80
12
117
24
3
1
70
1.11
41744--41783
20
2.0
20
100
0
80
25
10
35
30
1.88
48659--48724
23
2.9
22
75
4
60
21
27
19
31
1.97
50410--50588
43
4.2
42
85
2
214
24
23
19
32
1.97
52464--52488
12
2.1
12
100
0
50
76
8
0
16
1.02
52729--52891
81
2.0
83
95
4
296
28
22
23
25
2.00

Tables:   1

The End!