genome.fa.s5419.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005419.1 Hibiscus syriacus cultivar Beakdansim tig00012432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82777

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12041--12110	18	3.9	18	72	7	61	57	1	2	38	1.23
12075--12132	26	2.2	26	78	0	62	55	0	3	41	1.17
12662--12752	20	4.4	20	75	14	87	23	20	18	37	1.94
12679--12770	41	2.2	41	94	0	166	20	20	22	35	1.96
12699--12770	21	3.5	21	73	17	69	20	20	23	34	1.96
13596--13728	21	6.5	21	72	11	105	34	26	19	19	1.96
13596--13767	81	2.1	81	83	9	208	36	23	19	20	1.95
13763--13809	21	2.2	21	96	0	85	21	19	31	27	1.97
13911--13971	32	1.9	32	100	0	122	55	24	0	19	1.43
28833--28884	25	2.2	22	83	16	61	38	5	0	55	1.24
29963--30088	63	2.0	63	100	0	252	23	28	9	38	1.86
31852--31892	20	2.0	20	86	9	57	19	26	19	34	1.96
38375--38410	2	18.5	2	94	5	65	50	0	0	50	1.00
43252--43279	14	2.0	14	100	0	56	50	7	0	42	1.30
43549--43578	10	3.0	10	95	0	51	3	20	10	66	1.35
45591--45640	2	26.0	2	86	8	68	50	0	0	50	1.00
47884--47926	2	21.5	2	100	0	86	48	0	0	51	1.00
52932--53184	31	8.2	31	96	0	461	32	15	12	38	1.86
53694--53919	64	3.5	65	80	4	217	28	18	20	32	1.96
56855--57106	31	8.2	31	94	0	443	33	15	11	38	1.84
57616--57839	64	3.5	64	83	4	213	28	18	20	33	1.96
58605--58679	34	2.2	34	97	0	141	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59878--59954	39	2.0	39	82	10	95	42	5	7	44	1.55
62164--62214	6	8.8	6	87	12	56	29	0	68	1	1.00
64878--65004	11	10.6	11	70	12	65	30	21	21	26	1.98
65712--65742	3	10.3	3	92	0	53	3	29	0	67	1.06
66378--66407	14	2.1	15	93	6	53	16	0	33	50	1.46
66680--66709	14	2.1	14	93	0	51	43	0	6	50	1.28
72415--72458	19	2.4	19	81	7	56	43	0	2	54	1.12
72371--72475	33	3.2	32	74	15	81	35	0	3	60	1.15
74215--74307	21	4.5	21	89	8	120	18	34	26	20	1.96
74242--74298	20	2.8	20	94	2	96	19	35	22	22	1.96
74817--74913	33	2.9	34	85	3	124	56	4	2	37	1.30
74815--74920	34	3.2	32	82	8	122	55	4	1	37	1.32
75311--77054	506	3.5	508	94	2	2998	31	20	25	22	1.98
75311--77063	127	13.9	128	92	4	2958	31	19	25	22	1.98
80638--80690	22	2.5	22	84	9	65	58	0	0	41	0.98

Tables:   1

The End!