genome.fa.s5420.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005420.1 Hibiscus syriacus cultivar Beakdansim tig00012433_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63655

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2933--2966	3	11.3	3	100	0	68	64	0	0	35	0.94
10529--10590	26	2.4	26	94	0	106	43	22	3	30	1.69
11853--11916	24	2.7	23	70	15	58	29	9	1	59	1.38
12590--12652	21	3.0	21	83	0	63	25	19	25	30	1.98
12612--12659	21	2.3	21	85	0	60	29	22	20	27	1.99
14336--14377	22	1.9	22	90	9	68	47	4	16	30	1.67
14336--14383	22	2.1	22	85	11	62	41	8	14	35	1.76
15146--15179	16	2.1	17	88	5	52	29	2	11	55	1.50
15509--15626	41	2.8	42	72	19	120	34	15	18	31	1.92
15394--15738	83	4.2	82	77	4	291	34	14	18	32	1.91
15374--15761	83	4.7	81	71	10	228	32	14	18	34	1.91
17617--17687	31	2.4	29	76	6	79	46	12	7	33	1.69
18617--18656	18	2.2	18	100	0	80	12	50	5	32	1.62
24118--24259	44	3.2	44	82	0	176	26	28	19	26	1.99
24073--24259	88	2.1	87	80	6	198	28	25	18	27	1.98
24223--24388	42	4.0	41	77	5	163	33	22	16	27	1.96
24223--24400	43	4.2	42	77	6	171	34	23	16	26	1.95
24407--24443	14	2.7	14	84	15	51	10	24	32	32	1.90
24649--24748	51	2.0	51	93	0	173	49	5	7	39	1.52
24822--24862	17	2.4	16	92	8	64	24	0	2	73	0.96
24891--24942	26	2.0	26	85	7	70	34	17	5	42	1.73
25827--25863	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27282--27325	21	2.1	21	82	0	52	50	22	0	27	1.50
27380--27442	7	9.0	7	79	6	65	49	26	0	23	1.51
27380--27442	14	4.5	14	83	0	72	49	26	0	23	1.51
27375--27439	21	3.1	21	86	4	78	50	26	0	23	1.49
30336--30403	24	2.9	24	84	2	75	27	25	22	25	1.99
30362--30418	24	2.4	24	90	0	87	24	28	21	26	1.99
30616--30646	16	1.9	16	100	0	62	35	32	19	12	1.90
31084--31109	2	13.0	2	100	0	52	50	0	0	50	1.00
34990--35110	32	3.8	31	81	4	143	18	26	27	28	1.98
34989--35130	63	2.2	64	84	1	178	16	27	26	28	1.97
36068--36100	16	2.1	16	88	5	50	69	0	3	27	1.03
36552--36663	59	1.9	59	83	3	145	33	23	3	40	1.72
37883--37934	27	1.9	26	88	7	77	67	7	0	25	1.17
39280--39368	42	2.1	42	85	0	115	21	44	14	19	1.86
39420--40148	114	6.4	114	97	0	1352	24	44	13	18	1.85
39954--40184	36	6.2	36	73	9	169	24	43	11	19	1.85
40087--40151	21	3.4	21	62	24	52	23	44	10	21	1.83
41218--41250	17	2.0	17	88	5	50	45	3	0	51	1.16
43013--43047	2	18.0	2	88	5	54	45	2	0	51	1.16
43231--43264	17	2.0	17	88	0	50	41	0	5	52	1.25
47138--47176	20	2.0	20	89	0	60	33	23	10	33	1.88
50838--50943	40	2.5	43	77	8	112	33	26	21	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58661--58725	26	2.5	26	89	0	103	15	15	30	38	1.88
59295--59341	18	2.7	17	86	3	67	27	29	8	34	1.87
61933--61973	21	1.9	22	85	5	57	26	19	14	39	1.90
62705--62801	3	32.0	3	83	6	124	39	0	0	60	0.97

Tables:   1

The End!