Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005421.1 Hibiscus syriacus cultivar Beakdansim tig00012435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109268

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5438--5467
11
2.7
11
100
0
60
83
0
0
16
0.65
5559--5598
20
2.1
19
85
4
53
37
7
30
25
1.83
17619--17652
2
17.0
2
100
0
68
50
0
0
50
1.00
21542--21629
28
3.1
28
91
4
142
57
14
3
23
1.52
28263--28297
17
2.1
17
100
0
70
17
37
5
40
1.73
28695--28806
35
3.2
35
85
0
152
42
20
0
35
1.58
29856--29967
35
3.2
34
86
5
143
38
0
17
42
1.56
30087--30142
29
1.9
29
85
7
78
35
5
25
33
1.79
35145--35231
35
2.5
34
80
12
97
54
10
8
27
1.62
37460--37497
18
2.2
18
90
4
60
63
5
0
31
1.17
37790--37828
18
2.2
18
90
4
62
61
5
0
33
1.18
37274--37938
331
2.0
331
97
0
1267
46
9
11
31
1.73
52794--52836
14
3.2
12
81
18
50
4
25
0
69
1.07
59488--59534
24
2.0
24
84
12
62
46
0
8
44
1.33
71250--71319
31
2.3
31
82
7
88
21
20
14
44
1.86
71348--71423
30
2.5
31
97
2
145
28
23
9
38
1.86
71593--71665
30
2.4
30
83
2
83
39
17
5
36
1.73
73103--73183
31
2.6
31
80
1
101
58
3
6
32
1.41
73612--73725
35
3.3
35
87
0
156
42
21
0
35
1.60
75056--75167
35
3.2
35
87
0
152
35
0
22
41
1.60
75392--75442
2
25.5
2
100
0
102
49
0
0
50
1.00
89734--89773
20
2.0
20
100
0
80
40
5
10
45
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91074--91131
31
1.9
30
85
3
80
20
10
6
62
1.50
91465--91489
2
12.5
2
100
0
50
52
0
0
48
1.00
91880--91919
18
2.2
19
86
8
57
27
0
5
67
1.11
91882--91938
17
3.4
16
82
4
51
33
3
3
59
1.31
92235--92287
18
2.8
19
80
8
63
41
0
1
56
1.10
94510--94573
23
2.8
23
82
0
92
34
26
23
15
1.95
94803--94861
30
2.0
29
83
3
73
33
22
6
37
1.80
96022--96075
20
2.7
20
91
0
90
22
37
14
25
1.93
96092--96146
21
2.6
21
94
0
92
29
27
20
23
1.99
98334--98558
64
3.5
64
81
6
217
32
20
20
26
1.97
99215--99401
31
6.0
31
94
2
324
19
18
23
38
1.93
101912--101961
25
2.0
25
96
0
91
36
24
18
22
1.95
102380--102413
6
6.0
6
93
6
54
52
0
0
47
1.00
102415--102505
2
48.0
2
70
10
57
50
0
0
49
1.00
102402--102505
37
2.8
37
89
4
156
50
0
0
49
1.00
102872--102930
11
5.7
11
84
15
90
35
0
15
49
1.45
102871--102932
20
3.1
20
100
0
124
33
0
14
51
1.43
103278--103323
24
1.9
24
82
8
58
32
0
6
60
1.22

Tables:   1

The End!