genome.fa.s5422.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005422.1 Hibiscus syriacus cultivar Beakdansim tig00012438_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162166

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912--978	18	3.4	20	89	10	102	31	22	16	29	1.96
912--979	20	3.5	20	90	10	104	30	23	16	29	1.96
990--1108	61	1.9	62	84	3	159	36	21	19	23	1.95
1658--1758	17	5.8	17	76	20	102	20	20	28	29	1.98
1680--1784	17	5.5	19	80	16	119	22	21	26	28	1.99
1657--1771	37	3.2	37	92	7	186	21	21	27	28	1.99
7367--7438	30	2.4	30	92	0	117	30	26	19	23	1.98
7430--7550	30	3.9	30	76	11	93	31	20	17	30	1.96
8686--8736	19	2.7	19	96	0	93	23	25	25	25	2.00
10766--10886	63	1.9	63	89	0	188	34	20	21	23	1.97
11451--11506	18	2.9	19	79	10	78	19	23	30	26	1.98
11451--11507	20	3.0	20	82	7	82	21	22	29	26	1.99
16133--16173	21	2.0	21	95	0	73	26	29	19	24	1.98
16242--16332	31	3.0	30	93	6	157	42	16	6	34	1.74
25481--25510	6	5.0	6	100	0	60	33	0	66	0	0.92
38456--38489	15	2.2	15	89	5	50	5	26	17	50	1.69
38764--38805	17	2.5	17	96	0	75	11	4	33	50	1.60
43150--43263	35	3.1	36	69	20	94	35	22	14	27	1.93
47909--48018	35	3.1	35	64	23	84	35	22	13	28	1.92
53120--53200	42	1.9	42	89	0	126	23	20	28	27	1.99
60160--60190	2	15.5	2	100	0	62	51	0	0	48	1.00
60210--60375	85	2.0	84	83	7	210	29	18	21	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60347--60401	13	4.2	13	88	0	83	36	16	21	25	1.94
60347--60401	26	2.1	26	96	0	101	36	16	21	25	1.94
64557--64598	21	2.0	21	90	0	66	30	16	23	28	1.96
65545--65612	23	3.0	23	84	0	91	19	26	25	29	1.98
70729--70786	23	2.5	23	80	5	73	22	29	20	27	1.99
75886--75949	29	2.2	29	94	0	110	45	20	20	14	1.85
76946--77039	25	3.6	25	72	17	82	45	1	1	52	1.15
76947--77066	55	2.2	55	89	4	181	44	0	1	53	1.16
76955--77039	27	3.1	27	70	11	82	44	0	1	54	1.07
76947--77081	55	2.4	56	86	6	177	45	1	1	51	1.19
77062--77123	19	3.3	19	78	15	58	37	1	0	61	1.06
79284--79436	45	3.4	46	81	7	179	30	19	16	33	1.94
85151--85209	21	2.7	22	78	5	66	27	22	25	25	2.00
85132--85212	23	3.6	22	78	8	92	24	24	24	25	2.00
87462--87513	22	2.4	22	80	3	70	36	0	42	21	1.53
87868--87977	46	2.4	46	84	6	152	30	20	16	31	1.95
89600--89918	130	2.4	131	82	3	345	23	15	32	28	1.95
89955--90009	28	2.0	28	88	0	83	43	12	16	27	1.84
89967--90043	28	2.6	28	80	13	84	46	10	15	27	1.78
90785--90885	36	2.9	34	82	4	114	46	10	15	26	1.79
90785--90885	33	2.9	34	80	10	107	46	10	15	26	1.79
91198--91230	14	2.3	15	94	5	59	21	3	27	48	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94918--94977	31	2.0	30	90	3	93	65	8	8	18	1.45
96025--96058	17	2.0	17	100	0	68	47	5	5	41	1.52
98285--98311	3	9.0	3	100	0	54	66	0	0	33	0.92
99385--99411	14	1.9	14	100	0	54	7	29	40	22	1.81
102031--102147	35	3.2	36	90	6	175	43	19	5	31	1.73
102079--102139	21	3.2	21	65	29	64	42	21	4	31	1.74
102046--102174	35	3.6	36	85	9	142	41	18	6	32	1.77
106211--106243	16	2.1	16	94	0	57	33	27	6	33	1.81
106642--106760	35	3.3	36	90	5	179	43	18	5	32	1.72
112320--112353	5	6.4	5	87	12	50	17	0	5	76	0.98
112320--112353	11	3.2	10	88	12	50	17	0	5	76	0.98
112320--112353	16	2.1	16	100	0	68	17	0	5	76	0.98
122381--122432	22	2.4	22	83	0	68	9	25	0	65	1.23
122961--123005	20	2.2	20	96	0	81	28	20	26	24	1.99
123388--123415	12	2.3	12	100	0	56	50	0	14	35	1.43
130717--130798	40	2.0	40	95	0	146	35	8	10	45	1.70
131010--131052	12	3.5	12	81	6	50	58	0	2	39	1.11
131176--131219	21	2.1	21	87	8	63	59	0	0	40	0.98
131175--131212	18	2.1	18	85	9	51	57	0	0	42	0.98
131946--131979	17	1.9	18	88	5	52	58	0	8	32	1.29
132490--132528	20	1.9	20	84	5	51	43	17	12	25	1.85
133691--133722	7	4.6	7	100	0	64	28	0	59	12	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147460--147537	23	3.3	23	81	1	93	32	23	20	24	1.98
147548--147762	104	2.1	103	93	0	367	38	24	11	26	1.89
160644--160704	23	2.7	23	89	0	86	29	26	22	21	1.99
160727--160944	103	2.1	103	94	0	382	37	23	12	26	1.91

Tables:   1

The End!