genome.fa.s5424.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005424.1 Hibiscus syriacus cultivar Beakdansim tig00012440_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85668

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24539--24601	31	2.1	30	87	3	90	39	9	9	41	1.70
26892--26988	45	2.2	45	98	0	185	41	16	8	34	1.78
26898--26971	24	3.2	24	64	24	68	43	17	9	29	1.81
27216--27328	35	3.2	34	85	5	145	43	21	0	34	1.59
27658--27700	20	2.2	19	83	4	50	51	4	0	44	1.22
28380--28491	35	3.2	34	89	2	161	34	0	22	41	1.60
28598--28655	29	1.9	30	86	6	82	29	6	29	34	1.83
46526--46573	21	2.3	21	96	0	87	25	8	12	54	1.65
53025--53113	23	3.8	24	73	18	80	29	23	26	20	1.99
53561--53738	54	3.3	54	92	0	284	23	17	29	29	1.97
56072--57228	575	2.0	572	90	4	1848	39	12	12	36	1.80
58030--58162	52	2.6	52	97	0	248	28	18	11	41	1.85
59300--59357	20	2.8	20	92	2	89	32	24	10	32	1.89
60261--60431	20	8.2	20	73	12	114	41	22	19	16	1.90
60323--60428	20	5.1	20	78	15	117	37	25	19	16	1.93
60318--60428	42	2.7	42	88	2	163	38	24	19	17	1.92
60527--60570	6	7.5	6	97	2	81	31	52	15	0	1.44
61059--61092	12	3.1	11	91	8	52	0	17	52	29	1.45
61089--61113	6	4.2	6	100	0	50	32	0	32	36	1.58
61206--61418	40	5.2	40	87	7	286	16	19	26	37	1.93
61213--61413	20	9.8	20	85	11	232	17	18	27	35	1.94
61425--61475	19	2.6	20	78	12	52	11	19	25	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61685--61716	15	2.1	15	94	0	55	46	12	12	28	1.78
77104--77150	23	2.0	23	87	0	67	40	8	17	34	1.79
77109--77237	23	5.9	22	70	12	68	44	7	11	35	1.70
77090--77312	87	2.6	87	88	1	340	43	9	13	33	1.76
77265--77312	23	2.1	23	88	0	69	35	10	18	35	1.85
77330--78026	198	3.5	197	83	5	866	31	14	14	39	1.86
78273--78313	21	2.0	21	90	0	64	41	19	0	39	1.52
78371--78575	109	1.9	108	86	3	295	37	14	16	32	1.88

Tables:   1

The End!