Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005425.1 Hibiscus syriacus cultivar Beakdansim tig00012441_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61413

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2081--2114
9
3.9
9
84
7
52
35
0
2
61
1.11
2080--2118
17
2.4
17
95
4
71
33
0
5
61
1.18
2064--2136
16
4.6
16
79
5
58
28
0
2
68
1.03
6959--7038
3
27.3
3
87
5
119
37
0
1
61
1.04
8264--8305
22
1.9
22
85
0
57
30
2
2
64
1.19
8340--8406
23
3.0
22
81
12
82
26
5
1
65
1.24
8661--8706
23
2.0
22
83
4
56
47
10
2
39
1.51
8847--8884
2
19.0
2
100
0
76
50
0
0
50
1.00
8557--8852
155
1.9
152
80
10
341
39
7
7
45
1.60
11189--11282
49
1.9
49
100
0
188
39
7
24
28
1.82
11661--11713
21
2.6
20
88
8
72
18
11
7
62
1.52
11661--11713
20
2.6
20
87
3
70
18
11
7
62
1.52
17286--17345
22
2.7
22
89
5
86
36
13
13
36
1.84
18029--18119
45
2.0
46
89
8
141
23
25
23
28
1.99
18051--18420
76
4.9
76
91
1
584
24
20
21
33
1.97
18051--18420
151
2.5
152
91
1
593
24
20
21
33
1.97
18354--18467
45
2.5
45
87
5
158
26
22
20
30
1.98
18278--18566
121
2.4
121
89
2
424
28
21
20
29
1.98
18709--18761
3
18.0
3
88
3
81
35
0
1
62
1.06
19901--19942
22
1.9
22
85
0
57
30
2
2
64
1.19
19977--20043
23
3.0
22
76
6
71
28
5
2
62
1.33
20053--20119
2
33.5
2
100
0
134
50
0
0
49
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20064--20369
151
2.0
152
80
6
336
42
5
6
46
1.51
30351--30384
13
2.6
13
85
0
50
23
2
2
70
1.15
30398--30484
33
2.5
35
83
9
108
20
2
14
62
1.43
30403--30490
34
2.6
33
85
7
106
19
1
15
63
1.37
30481--30565
35
2.5
33
76
14
82
27
7
10
55
1.60
33518--33548
16
1.9
16
93
0
53
64
0
3
32
1.09
36235--36275
2
20.5
2
100
0
82
51
0
0
48
1.00
39699--39747
2
24.5
2
100
0
98
51
0
0
48
1.00
40676--40708
15
2.1
17
88
11
52
45
0
15
39
1.46
41336--41382
24
1.9
24
83
12
60
48
4
0
46
1.21
41601--41651
26
2.0
26
84
0
66
43
9
13
33
1.77
44357--44523
83
2.0
83
100
0
334
23
22
21
31
1.98
45080--45112
3
11.0
3
100
0
66
66
0
0
33
0.92
46337--46374
20
1.9
20
94
0
67
44
10
23
21
1.83
46338--46380
20
2.3
19
84
8
52
48
9
20
20
1.77
48517--48551
18
1.9
18
88
11
54
40
8
11
40
1.72
57632--57664
2
16.5
2
100
0
66
51
0
0
48
1.00
60738--60777
16
2.5
16
100
0
80
50
0
40
10
1.36

Tables:   1

The End!