Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005427.1 Hibiscus syriacus cultivar Beakdansim tig00012443_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61615

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7893--7940
23
2.1
23
100
0
96
35
27
16
20
1.94
16097--16232
32
4.2
32
78
7
123
32
19
12
35
1.90
17765--17868
53
2.0
52
94
1
181
35
16
9
38
1.81
17847--18315
243
1.9
244
88
1
708
44
11
18
26
1.83
22261--22343
31
2.7
31
84
1
105
55
8
6
30
1.54
23450--23480
2
15.5
2
100
0
62
51
0
0
48
1.00
28990--29042
3
17.7
3
79
14
56
37
0
0
62
0.96
28987--29040
28
2.0
27
86
10
76
38
0
0
61
0.96
28993--29040
10
4.9
10
82
12
64
37
0
0
62
0.95
30314--30376
29
2.2
28
83
8
74
30
1
3
65
1.18
30697--30753
29
2.0
29
86
6
80
47
1
0
50
1.11
34573--34604
15
2.1
15
94
0
55
25
18
9
46
1.79
38380--38410
9
3.6
9
91
8
55
22
22
0
54
1.44
41925--41975
20
2.5
19
84
15
66
78
0
17
3
0.90
41925--41978
11
4.9
11
74
21
51
77
0
18
3
0.91
41925--41976
21
2.5
22
84
12
74
78
0
17
3
0.89
43484--44496
113
9.0
113
93
0
1767
36
15
19
28
1.93
44476--44731
103
2.4
104
83
10
299
39
16
17
26
1.90
44933--44985
3
17.7
3
79
14
56
37
0
0
62
0.96
44930--44983
28
2.0
27
86
10
76
38
0
0
61
0.96
44936--44983
10
4.9
10
82
12
64
37
0
0
62
0.95
46212--46274
29
2.2
28
83
8
74
30
1
4
63
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46596--46653
29
2.0
30
86
3
82
44
1
1
51
1.21
53046--53326
155
1.8
152
91
4
449
46
6
6
40
1.55
55440--55532
3
32.7
3
73
14
81
67
0
2
30
1.02
55453--55514
17
3.7
17
77
16
67
67
0
1
30
1.00
55449--55533
33
2.6
33
80
14
95
69
0
2
28
1.01
55880--56396
118
4.4
118
82
7
599
26
18
16
38
1.91
56600--56653
22
2.5
22
93
0
90
37
11
16
35
1.84
57276--57313
18
2.1
18
95
0
67
57
2
5
34
1.35

Tables:   1

The End!