Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005429.1 Hibiscus syriacus cultivar Beakdansim tig00012446_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158755

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9588--9652
30
2.1
31
88
2
96
29
6
6
58
1.47
11991--12038
21
2.7
16
79
20
51
50
2
0
47
1.12
21792--21841
8
6.2
8
97
0
91
36
24
14
26
1.93
21795--21841
4
11.8
4
81
0
58
34
25
14
25
1.94
27274--27308
15
2.4
14
90
9
52
51
0
0
48
1.00
27268--27316
21
2.2
23
85
7
66
46
2
0
51
1.12
30515--30568
7
7.7
7
100
0
108
44
40
0
14
1.46
30517--30575
7
8.1
8
96
1
67
45
38
0
15
1.46
33423--33466
20
2.1
22
87
8
65
36
29
0
34
1.58
33455--33496
2
21.0
2
100
0
84
50
0
0
50
1.00
33794--33843
17
3.1
17
68
26
54
20
6
22
52
1.68
37875--37946
29
2.4
30
86
2
92
45
6
18
29
1.75
40998--41155
76
2.1
76
100
0
316
22
20
25
31
1.98
42259--42301
6
6.8
6
87
10
59
46
0
0
53
1.00
43502--43568
29
2.3
30
82
5
75
28
4
19
47
1.68
44463--44585
62
2.0
63
82
4
151
18
28
27
25
1.98
44602--44654
25
2.1
25
85
0
70
26
7
18
47
1.75
45313--45430
60
2.0
60
84
3
139
35
17
16
29
1.93
46280--46411
60
2.2
60
82
5
151
40
4
20
34
1.73
68948--68990
23
2.0
23
86
9
63
72
0
0
27
0.85
72860--72904
7
6.4
7
85
10
65
68
0
2
28
1.01
73213--73252
21
1.9
21
84
0
53
35
10
5
50
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74727--74779
7
7.4
7
82
4
52
16
0
22
60
1.36
74698--74773
22
3.5
21
78
1
71
22
0
21
56
1.42
75113--75137
7
3.6
7
100
0
50
16
12
44
28
1.83
75270--75311
22
2.0
21
90
4
66
38
0
2
59
1.10
75939--76057
58
2.1
58
100
0
238
38
13
8
39
1.75
93492--93574
29
2.8
29
92
1
139
43
9
14
32
1.78
98264--98346
29
2.8
29
92
1
139
43
9
14
32
1.78
111297--111359
33
1.9
33
81
12
76
60
6
3
30
1.37
112156--112210
27
2.0
27
96
0
101
32
21
21
23
1.98
115567--115812
129
1.9
130
89
0
386
36
15
12
36
1.84
115580--115843
129
2.0
129
78
5
273
40
13
12
34
1.82
116143--116205
28
2.3
27
78
8
63
46
1
3
49
1.27
130260--130290
16
1.9
16
93
0
53
29
9
0
61
1.28
131932--131988
3
19.7
3
75
7
55
31
1
3
63
1.22
131932--131988
17
3.3
17
82
2
69
31
1
3
63
1.22
138301--138332
2
16.0
2
100
0
64
50
0
0
50
1.00
142322--142361
20
2.0
20
100
0
80
10
15
25
50
1.74
143155--143275
44
2.8
42
82
6
161
27
24
22
25
2.00
152974--153031
31
1.9
31
92
3
100
25
13
3
56
1.53
158095--158127
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!