genome.fa.s5433.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005433.1 Hibiscus syriacus cultivar Beakdansim tig00012455_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81736

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8503--8529	14	1.9	14	100	0	54	11	7	0	81	0.87
9948--10049	35	2.9	36	98	1	197	42	17	17	22	1.89
14234--14472	114	2.1	113	78	7	252	31	12	24	30	1.93
18219--18556	112	2.9	117	81	9	376	31	13	8	45	1.74
19864--19927	23	3.0	21	79	18	62	60	0	4	34	1.17
20203--20237	18	1.9	18	88	0	52	28	0	2	68	1.04
22552--23422	6	150.0	6	87	10	1305	49	17	0	32	1.48
24237--24282	16	2.8	17	86	6	67	54	6	0	39	1.26
31499--31554	26	2.1	27	90	6	87	50	5	16	28	1.67
34394--34427	18	1.9	18	88	5	52	29	14	5	50	1.67
42831--42855	12	2.1	12	100	0	50	0	8	48	44	1.32
43872--44005	21	6.5	21	78	4	139	41	17	23	17	1.90
43872--44005	41	3.3	41	98	0	259	41	17	23	17	1.90
43994--44088	20	4.7	20	80	2	91	34	24	17	23	1.96
43973--44068	41	2.3	41	82	3	113	38	21	18	20	1.93
43872--44041	20	8.3	20	67	11	78	41	18	21	18	1.90
44276--44319	22	2.0	22	95	0	79	20	45	15	18	1.85
44583--44620	20	1.9	20	88	0	58	13	15	21	50	1.78
45940--45984	18	2.5	18	88	0	72	26	44	15	13	1.83
46457--46523	20	3.4	20	81	2	73	38	23	22	14	1.92
46512--46569	14	3.9	14	79	16	71	48	24	17	10	1.78
46496--46586	32	2.8	33	94	3	166	47	21	18	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46603--46642	14	2.9	14	100	0	80	7	15	27	50	1.70
46631--46697	19	3.5	19	83	4	89	14	23	23	37	1.93
46643--46697	20	2.8	19	89	5	83	16	25	23	34	1.95
48674--48712	19	2.0	19	85	5	51	41	28	17	12	1.87
48715--48782	19	3.8	19	85	14	101	47	17	22	13	1.82
48803--48876	19	3.8	19	92	1	112	16	22	24	36	1.94
49933--49986	24	2.2	24	90	0	81	24	16	20	38	1.92
50284--50320	14	2.6	14	91	0	65	45	24	0	29	1.53
51677--51743	21	3.2	21	68	4	55	19	20	35	23	1.95
51677--51799	42	2.9	40	80	9	104	22	17	37	22	1.94
53791--53942	19	8.1	19	80	11	152	43	22	21	12	1.86
53938--54004	19	3.5	19	85	2	89	10	16	25	47	1.78
54521--54572	20	2.6	20	96	0	95	26	17	28	26	1.97
54558--54658	20	4.9	21	71	12	59	18	19	18	42	1.89
54521--54614	20	4.7	20	81	2	89	24	17	24	34	1.96
54542--54676	41	3.3	41	81	4	130	19	20	20	39	1.93
54603--54695	20	4.6	20	75	4	87	17	23	18	40	1.90
54603--54678	21	3.7	21	78	3	91	15	23	18	42	1.89
54603--54695	41	2.3	41	98	0	177	17	23	18	40	1.90
66754--66819	31	2.2	31	88	2	98	42	6	7	43	1.57
69064--69116	27	2.0	27	85	10	74	43	0	7	49	1.31
71918--71955	20	1.9	20	94	0	67	39	15	21	23	1.92

Tables:   1

The End!