genome.fa.s5434.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005434.1 Hibiscus syriacus cultivar Beakdansim tig00012460_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125156

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1206--1354	7	19.9	7	68	21	56	77	2	14	6	1.05
1253--1295	17	2.7	15	89	7	59	83	0	6	9	0.80
1253--1355	23	4.5	23	70	12	77	79	2	11	5	1.01
4464--5081	139	4.5	139	89	4	921	36	17	21	24	1.94
4450--5081	277	2.3	276	90	2	966	36	17	20	25	1.95
5054--5098	17	2.6	17	96	0	81	46	8	22	22	1.79
5277--5325	18	2.8	18	78	3	55	53	6	10	30	1.59
10582--10801	105	2.1	105	82	3	264	41	11	11	35	1.77
12971--13011	21	2.0	21	85	0	55	31	14	14	39	1.87
18904--18964	16	3.8	16	95	0	104	9	13	19	57	1.63
22399--22590	57	3.4	57	81	0	224	38	9	17	34	1.83
22775--22940	68	2.7	59	75	17	154	31	12	25	30	1.93
22813--22978	67	2.5	68	89	1	262	28	13	27	30	1.94
22957--22996	19	2.1	19	100	0	80	17	15	32	35	1.91
22882--23064	87	2.1	86	90	1	285	25	13	27	32	1.94
22814--23131	154	2.1	154	90	1	494	27	13	27	31	1.94
22968--23385	68	6.2	68	87	1	561	29	14	25	30	1.95
23529--23717	45	4.2	45	92	0	288	46	5	20	27	1.73
23639--23710	22	3.2	22	69	18	67	47	6	19	26	1.74
23648--23833	45	4.1	44	77	10	155	41	7	20	30	1.80
31898--31950	23	2.3	23	90	0	79	32	26	18	22	1.97
32760--32811	19	2.5	22	84	12	74	25	25	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36092--36145	19	2.6	22	85	8	78	33	16	18	31	1.93
36494--36679	57	3.3	57	82	4	232	37	9	17	35	1.82
36855--37398	68	8.0	68	87	1	734	30	13	25	30	1.94
37513--37826	45	6.9	45	87	2	337	43	7	21	27	1.79
41970--42025	16	3.6	16	80	4	78	39	5	17	37	1.73
41954--42023	31	2.3	31	89	0	104	38	5	20	35	1.76
41954--42023	16	4.5	15	80	5	77	38	5	20	35	1.76
42724--42778	16	3.3	16	79	18	51	65	0	3	30	1.10
42737--42775	18	2.1	19	90	4	62	64	0	2	33	1.08
42807--42856	23	2.2	23	82	7	57	70	2	2	26	1.09
44925--44989	5	12.8	5	77	9	60	70	3	4	21	1.19
44926--44988	19	3.2	19	81	6	63	69	3	4	22	1.21
44953--44996	15	3.0	15	90	3	63	70	2	9	18	1.24
47319--47365	23	2.0	23	100	0	94	25	21	23	29	1.99
47898--47937	18	2.5	15	88	12	53	75	0	7	17	1.03
48377--48420	12	3.8	12	81	3	54	63	2	20	13	1.40
55086--55125	9	4.1	9	84	15	53	75	12	2	10	1.15
60212--60295	21	3.9	21	74	20	73	55	4	25	14	1.58
61440--61470	15	2.1	15	100	0	62	25	12	12	48	1.77
63314--63353	17	2.4	17	91	4	64	35	17	5	42	1.71
67742--67808	3	22.7	3	81	3	82	37	0	1	61	1.05
67730--67808	6	12.8	6	75	10	52	40	0	1	58	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67729--67808	18	4.5	18	90	3	117	40	0	1	58	1.06
69377--69402	2	13.0	2	100	0	52	50	0	0	50	1.00
75246--75341	9	10.0	10	73	17	62	80	0	15	4	0.86
75248--75345	11	8.8	11	75	12	67	80	0	15	4	0.85
75268--75341	20	3.7	20	77	16	66	81	0	13	5	0.86
75248--75341	48	1.9	48	87	6	136	80	0	14	4	0.85
77396--77719	54	6.0	54	89	0	461	35	13	24	26	1.92
78083--78192	22	5.0	22	93	2	145	36	11	13	38	1.82
78088--78192	44	2.4	44	91	3	167	37	10	14	38	1.80
78823--79421	223	2.7	223	88	0	871	32	18	19	29	1.96
79278--79611	177	1.9	177	88	2	501	32	18	19	28	1.96
79501--79698	87	2.3	87	90	0	306	34	17	21	26	1.95
80135--80241	3	36.0	3	80	1	126	33	0	2	63	1.09
81659--81699	21	1.9	22	90	5	66	39	0	2	58	1.11
81805--81872	2	34.0	2	100	0	136	50	0	0	50	1.00
82561--82599	17	2.3	17	95	0	69	48	25	0	25	1.51
83234--83337	52	2.0	53	90	1	165	32	3	8	54	1.49
88565--88601	16	2.3	16	100	0	74	21	35	16	27	1.94
89040--89107	5	13.8	5	73	3	57	70	2	2	23	1.15
89056--89107	20	2.6	20	90	0	86	69	3	0	26	1.06
90170--90208	18	2.2	18	95	0	69	20	35	0	43	1.52
95144--95170	8	3.4	8	100	0	54	74	14	0	11	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95390--95428	18	2.2	18	90	0	60	20	33	0	46	1.51
98251--98276	6	4.3	6	100	0	52	0	15	50	34	1.45
98859--98900	6	7.0	6	100	0	84	50	16	33	0	1.46
99156--99268	60	1.9	60	84	0	154	35	9	16	38	1.82
99143--99281	60	2.3	59	76	4	143	33	12	17	35	1.88
99479--99591	60	1.9	60	84	0	154	38	14	13	34	1.85
106751--106826	26	2.9	26	78	0	89	42	6	2	48	1.43
110699--110737	16	2.3	16	86	8	51	58	2	0	38	1.12
110711--110745	16	2.2	16	94	0	61	60	5	0	34	1.21
110960--110999	19	2.0	20	95	4	73	30	15	5	50	1.65
114288--114463	90	2.0	88	89	2	271	35	9	6	48	1.61
123262--123304	17	2.4	18	92	3	70	46	0	0	53	1.00

Tables:   1

The End!