Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005435.1 Hibiscus syriacus cultivar Beakdansim tig00012461_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112395

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7484--7523
20
2.0
20
90
0
62
5
5
50
40
1.46
7909--7948
2
20.0
2
100
0
80
50
0
0
50
1.00
9055--9095
2
20.5
2
100
0
82
51
0
0
48
1.00
12627--12681
28
2.0
28
88
0
83
30
14
25
29
1.95
25127--25282
67
2.3
67
89
5
242
26
16
18
37
1.92
26773--26826
21
2.6
21
93
0
90
9
35
7
48
1.63
32632--32684
26
2.0
26
82
7
63
24
20
15
39
1.91
43313--43371
26
2.3
26
82
5
66
44
0
3
52
1.17
43367--43435
30
2.2
30
80
14
77
44
1
1
52
1.19
43565--43620
23
2.3
23
84
6
67
50
1
0
48
1.11
50682--50727
24
2.0
22
87
8
65
15
4
4
76
1.11
51971--52036
29
2.3
29
97
0
123
19
27
3
50
1.63
62237--62297
23
2.6
23
86
2
86
16
18
16
49
1.80
65461--65515
2
27.5
2
100
0
110
49
0
0
50
1.00
65509--65559
21
2.6
19
79
11
57
23
5
0
70
1.09
68762--68813
22
2.4
21
84
12
70
78
5
15
0
0.92
68762--68830
20
3.3
20
84
8
75
78
5
14
1
1.01
69438--69488
22
2.3
22
96
0
93
35
27
11
25
1.91
70347--70451
36
2.9
36
88
2
156
26
22
13
37
1.91
70347--70449
37
2.8
37
91
1
154
26
22
13
37
1.91
70558--70655
36
2.7
36
88
4
135
24
19
16
39
1.91
70614--70788
67
2.6
65
84
6
217
32
21
9
36
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70605--70787
68
2.7
67
84
4
219
30
21
9
38
1.85
70939--71005
29
2.3
29
76
7
73
44
10
16
28
1.80
71392--72564
105
11.3
104
90
3
1658
33
25
18
22
1.97
71392--72564
205
5.7
206
91
3
1681
33
25
18
22
1.97
71392--72564
305
3.8
311
92
3
1796
33
25
18
22
1.97
73619--73649
2
15.5
2
93
0
53
45
0
0
54
0.99
73719--73763
2
22.5
2
100
0
90
48
0
0
51
1.00
73757--73808
21
2.5
21
83
0
59
23
5
0
71
1.07
73795--73829
16
2.1
18
89
10
56
25
8
0
65
1.21
74797--74841
16
2.8
16
100
0
90
31
6
20
42
1.77
78798--78897
46
2.2
46
83
1
121
41
5
13
41
1.65
84476--84519
15
2.9
15
77
16
54
34
2
2
61
1.21
87209--87407
81
2.4
82
80
9
190
38
19
12
30
1.88
93194--93226
16
2.2
16
89
10
52
27
0
6
66
1.15
98502--98579
32
2.5
31
79
6
93
15
26
30
26
1.96
102191--102737
257
2.1
251
86
8
734
40
19
12
27
1.87
103619--103705
38
2.3
38
90
2
140
35
40
11
12
1.79
105060--105131
32
2.2
32
85
0
90
33
36
8
22
1.84
110525--111140
256
2.4
251
81
9
699
41
19
12
26
1.87

Tables:   1

The End!