Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005436.1 Hibiscus syriacus cultivar Beakdansim tig00012463_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54411

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1628--1825
91
2.2
90
81
6
231
17
12
11
58
1.62
1628--1848
30
7.4
30
76
7
182
18
12
11
57
1.64
1650--1854
59
3.4
59
76
9
184
18
12
11
58
1.62
5571--5595
12
2.1
12
100
0
50
20
16
24
40
1.91
10006--10030
12
2.1
12
100
0
50
20
16
24
40
1.91
11124--11168
21
2.1
21
87
0
63
31
28
24
15
1.96
11836--11960
31
4.0
31
94
2
207
20
19
23
37
1.94
15291--15335
21
2.1
21
91
0
72
33
28
22
15
1.95
16001--16125
31
4.0
31
90
2
189
21
18
22
37
1.94
19220--19258
20
2.0
20
100
0
78
25
5
15
53
1.62
20688--20762
32
2.4
31
82
6
89
40
26
16
17
1.90
20793--20863
16
4.4
16
89
0
97
21
26
14
38
1.91
21099--21145
14
3.7
14
71
26
50
44
0
4
51
1.21
21098--21147
23
2.1
24
96
3
93
48
0
4
48
1.20
21387--21426
17
2.3
18
86
4
55
37
2
2
57
1.26
21609--21652
20
2.2
20
88
4
63
29
22
2
45
1.65
21773--21827
2
27.5
2
85
7
76
52
1
1
43
1.22
22274--22302
2
14.5
2
100
0
58
48
0
0
51
1.00
22399--22453
19
2.9
18
84
7
58
41
1
32
23
1.65
22409--22453
20
2.3
20
88
3
65
42
2
35
20
1.64
22682--22735
7
7.7
7
83
8
56
48
29
0
22
1.51
22681--22742
14
4.5
14
78
9
65
50
29
0
20
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22682--22746
20
3.2
19
77
14
67
49
29
0
21
1.50
25979--26035
23
2.8
20
75
19
55
21
24
29
24
1.99
31879--31963
2
44.0
2
71
19
56
45
3
2
48
1.32
31882--32010
66
2.0
66
86
6
183
44
3
2
49
1.33
32017--32219
15
14.1
14
65
23
77
42
4
6
46
1.51
32082--32236
18
8.2
18
72
20
113
43
2
5
48
1.40
32017--32251
15
17.3
13
66
20
74
42
4
5
47
1.47
32054--32232
98
1.8
98
95
0
322
43
4
5
46
1.47
32118--32255
62
2.2
65
79
12
144
42
2
5
50
1.36
47341--47419
31
2.7
31
83
11
96
44
15
2
37
1.60
49307--49368
23
2.7
23
94
0
115
33
8
24
33
1.85
51224--51269
23
2.0
23
91
0
74
39
8
19
32
1.82
51309--51382
23
3.2
23
92
0
121
37
8
20
33
1.82
51224--51460
110
2.2
110
93
0
402
40
10
16
32
1.83
51410--51459
23
2.2
23
85
0
64
40
12
16
32
1.84
51752--51807
19
2.9
19
73
5
51
48
0
3
48
1.19
51786--51881
28
3.1
30
75
17
83
47
1
1
50
1.15
51786--51876
29
3.0
30
73
15
80
49
1
1
48
1.15

Tables:   1

The End!