genome.fa.s5438.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005438.1 Hibiscus syriacus cultivar Beakdansim tig00012465_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72380

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
772--857	29	2.9	30	86	8	113	48	8	0	43	1.32
1299--1948	178	3.7	180	84	6	790	42	13	16	26	1.86
3870--3917	22	2.3	20	78	7	51	50	0	4	45	1.21
4284--4327	21	2.1	21	86	0	61	45	11	29	13	1.79
4365--4456	32	3.0	30	84	7	114	31	0	43	25	1.55
6151--6206	19	3.0	19	94	2	96	33	3	10	51	1.54
6551--7870	200	6.6	198	84	4	1591	36	14	17	31	1.90
10401--10441	11	3.5	11	81	18	55	36	9	7	46	1.65
10400--10451	25	2.1	25	96	0	95	34	7	9	48	1.65
10749--11839	200	5.5	199	81	4	1203	39	13	15	31	1.85
10749--11839	201	5.5	198	82	3	1249	39	13	15	31	1.85
10749--11841	400	2.7	400	88	2	1588	39	13	15	31	1.85
15987--16902	201	4.6	196	81	7	992	40	13	15	31	1.85
16636--16674	20	2.0	20	85	10	53	43	7	15	33	1.75
15987--16878	400	2.2	399	84	5	1135	40	13	15	31	1.85
16924--17077	64	2.4	64	89	2	229	33	11	9	45	1.72
17043--17100	23	2.5	23	82	0	71	36	15	5	43	1.69
19756--19799	12	3.7	11	82	11	52	27	0	0	72	0.85
24778--24832	22	2.5	22	93	0	92	10	12	21	54	1.68
25442--25487	12	3.6	12	81	16	56	45	17	19	17	1.85
25448--25488	12	3.1	13	80	19	57	46	14	17	21	1.84
27776--27815	21	1.9	21	94	0	71	30	15	7	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27810--27908	33	3.0	33	94	1	164	32	7	15	45	1.73
27894--27948	13	4.2	13	75	13	58	34	3	12	49	1.59
28278--28330	15	3.4	15	75	10	61	33	7	11	47	1.68
28424--28455	16	2.0	17	88	11	50	43	21	21	12	1.86
30176--30268	21	4.5	21	78	4	100	39	18	24	17	1.91
30176--30268	41	2.3	41	100	0	186	39	18	24	17	1.91
30195--30329	41	3.3	41	83	4	139	37	21	21	19	1.94
30299--30351	20	2.7	20	93	0	88	24	28	20	26	1.99
30904--30948	19	2.4	19	92	0	72	48	26	15	8	1.74
30944--31075	19	7.1	19	80	11	130	12	22	21	42	1.87
33074--33196	42	2.9	42	80	2	122	22	36	17	22	1.95
33130--33196	21	3.2	21	66	6	55	23	35	20	19	1.95
34556--34591	14	2.6	14	95	0	63	30	0	25	44	1.54
34770--34920	19	8.7	19	64	21	80	15	22	20	41	1.89
34774--34900	33	3.9	32	87	8	193	14	22	19	42	1.88
34767--34899	66	2.0	66	97	0	248	16	22	19	41	1.90
37190--37214	12	2.1	12	100	0	50	0	28	0	72	0.86
37389--37442	24	2.2	24	90	0	81	38	20	16	24	1.92
38511--38568	20	2.9	20	92	0	89	37	22	20	18	1.94
38591--38664	19	4.5	16	83	16	66	13	20	18	47	1.82
38587--38654	19	3.8	19	87	12	101	13	22	17	47	1.82
38568--38682	52	2.2	52	82	0	131	19	21	20	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40674--40729	20	2.9	19	84	5	85	35	21	25	17	1.95
40671--40740	19	3.6	19	78	3	68	41	20	21	17	1.90
40713--40791	32	2.4	33	89	2	115	49	21	17	11	1.78
40729--40786	14	3.9	14	77	16	53	51	22	15	10	1.73
40743--40802	18	3.5	17	76	19	63	50	25	16	8	1.73
40821--40877	14	3.8	14	80	17	69	10	15	22	50	1.74
40803--40893	32	2.8	33	91	3	148	12	17	20	49	1.78
40878--40932	20	2.8	19	83	8	65	16	23	23	36	1.94
41408--41452	18	2.5	18	88	0	72	13	15	44	26	1.83
43072--43115	22	2.0	22	95	0	79	18	15	45	20	1.85
43323--43400	41	1.9	41	86	0	111	21	16	21	39	1.92
43283--43397	20	5.7	20	76	5	79	23	16	23	36	1.94
43323--43418	41	2.3	41	80	3	104	20	19	21	37	1.94
71017--71053	2	18.5	2	100	0	74	51	0	0	48	1.00

Tables:   1

The End!