Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005439.1 Hibiscus syriacus cultivar Beakdansim tig00012466_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52839
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:15427 original size:42 final size:42
Alignment explanation
Indices: 15381--15496 Score: 187
Period size: 42 Copynumber: 2.8 Consensus size: 42
15371 ATTATTTTCG
*
15381 TCACAAATCACCAACTAAGACTGGTGACAAAAACAATTATCA
1 TCACAAATCACCAACTAAGACTAGTGACAAAAACAATTATCA
* *
15423 TCACAAATCACAAACTAAGACTAGTTACAAAAACAATTATCA
1 TCACAAATCACCAACTAAGACTAGTGACAAAAACAATTATCA
* *
15465 TCACAAATCACCAAATAAGACTAGTGATAAAA
1 TCACAAATCACCAACTAAGACTAGTGACAAAA
15497 TATTTTCATC
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.51, C:0.22, G:0.08, T:0.20
Consensus pattern (42 bp):
TCACAAATCACCAACTAAGACTAGTGACAAAAACAATTATCA
Found at i:17222 original size:15 final size:15
Alignment explanation
Indices: 17199--17249 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
17189 CGCCCCGCAT
* *
17199 CCGCACCGCATCCAC
1 CCGCCCCGCATCCGC
17214 CCGCCCCGCATCCGC
1 CCGCCCCGCATCCGC
* *
17229 CCTCCCCACATCCGC
1 CCGCCCCGCATCCGC
17244 CCGCCC
1 CCGCCC
17250 AACTAAATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.12, C:0.67, G:0.14, T:0.08
Consensus pattern (15 bp):
CCGCCCCGCATCCGC
Found at i:20796 original size:7 final size:7
Alignment explanation
Indices: 20784--20808 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
20774 AAAAAATATT
20784 ATATTTC
1 ATATTTC
20791 ATATTTC
1 ATATTTC
20798 ATATTTC
1 ATATTTC
20805 ATAT
1 ATAT
20809 CATTTTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (7 bp):
ATATTTC
Found at i:20870 original size:14 final size:15
Alignment explanation
Indices: 20851--20882 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
20841 TATAACATAA
20851 TTTTACAATTAA-AT
1 TTTTACAATTAATAT
20865 TTTTACAATTAATAT
1 TTTTACAATTAATAT
20880 TTT
1 TTT
20883 AATAATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (15 bp):
TTTTACAATTAATAT
Found at i:21632 original size:20 final size:21
Alignment explanation
Indices: 21607--21658 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
21597 TTTTCCCAAT
*
21607 TCGCAATGCGAATAAG-TAAA
1 TCGCAATGCGAATAAGAAAAA
* **
21627 TCGCAACGCGAATTGGAAAAA
1 TCGCAATGCGAATAAGAAAAA
21648 TCGCAATGCGA
1 TCGCAATGCGA
21659 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATAAGAAAAA
Found at i:21672 original size:20 final size:20
Alignment explanation
Indices: 21647--21781 Score: 121
Period size: 20 Copynumber: 6.7 Consensus size: 20
21637 AATTGGAAAA
21647 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
*
21667 ATCGCAATGCGATACTTACT
1 ATCGCAATGCGATACTGACT
* *
21687 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
21708 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
21728 TTCGCAACGCGATTCTGACT
1 ATCGCAATGCGATACTGACT
* * *
21748 TTCGCAACGCGATAAT-ACAT
1 ATCGCAATGCGATACTGAC-T
21768 AATCGCAATGCGAT
1 -ATCGCAATGCGAT
21782 TTTCAAAGCG
Statistics
Matches: 96, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
19 4 0.04
20 66 0.69
21 24 0.25
22 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:21691 original size:61 final size:61
Alignment explanation
Indices: 21644--21775 Score: 183
Period size: 61 Copynumber: 2.2 Consensus size: 61
21634 GCGAATTGGA
* * * * *
21644 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * *
21705 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
*
21766 ATAATCGCAA
1 AAAATCGCAA
21776 TGCGATTTTC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:21977 original size:22 final size:22
Alignment explanation
Indices: 21949--21992 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
21939 CACTCTCTCA
21949 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
21971 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
21993 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:22299 original size:20 final size:20
Alignment explanation
Indices: 22255--22313 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
22245 GCGATTCTCT
**
22255 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
*
22275 CGTTGCGATAGTCATTTTCT
1 CGTTGCGATAGTCATTTTCG
* **
22295 TGTTGCGATTTTCATTTTC
1 CGTTGCGATAGTCATTTTC
22314 AGAAACTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.44
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:23654 original size:18 final size:18
Alignment explanation
Indices: 23633--23677 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
23623 TCCACTTCGG
*
23633 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
23651 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
23669 GAGCCATCA
1 GAGCCATCA
23678 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:24214 original size:19 final size:20
Alignment explanation
Indices: 24160--24226 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
24150 TAGTTTACTT
* *
24160 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
24180 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
24200 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
24219 TCGCAACG
1 TCGCAACG
24227 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:24253 original size:19 final size:19
Alignment explanation
Indices: 24199--24262 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
24189 GGAAATGGCT
*
24199 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAAAGAAA
*
24218 ATCGCAA--CG---ACAAA
1 ATCGCAATGCGAAAAGAAA
24232 ATCGCAATGCGAAAAGAAA
1 ATCGCAATGCGAAAAGAAA
24251 ATCGCAATGCGA
1 ATCGCAATGCGA
24263 TTTGTGTTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
14 10 0.27
16 2 0.05
17 2 0.05
19 23 0.62
ACGTcount: A:0.47, C:0.20, G:0.20, T:0.12
Consensus pattern (19 bp):
ATCGCAATGCGAAAAGAAA
Found at i:24293 original size:14 final size:14
Alignment explanation
Indices: 24274--24364 Score: 74
Period size: 14 Copynumber: 5.9 Consensus size: 14
24264 TTGTGTTTCG
24274 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
24288 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
24304 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
*
24320 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
24337 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
*
24353 CCTTGCGATTTT
1 CGTTGCGATTTT
24365 CATTTCGCAT
Statistics
Matches: 63, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
14 27 0.43
15 3 0.05
16 11 0.17
17 4 0.06
18 12 0.19
19 6 0.10
ACGTcount: A:0.11, C:0.19, G:0.22, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:24338 original size:33 final size:33
Alignment explanation
Indices: 24269--24380 Score: 199
Period size: 33 Copynumber: 3.4 Consensus size: 33
24259 GCGATTTGTG
*
24269 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
24301 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
*
24334 TTTCGCATTGCGATTTTGTCCTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
24367 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
24381 AGCCATTTCA
Statistics
Matches: 77, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
32 26 0.34
33 51 0.66
ACGTcount: A:0.12, C:0.20, G:0.21, T:0.47
Consensus pattern (33 bp):
TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
Found at i:24399 original size:20 final size:19
Alignment explanation
Indices: 24365--24420 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
24355 TTGCGATTTT
*
24365 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
24384 CATTTCAGCGTTGCGATAGT
1 CATTTC-GCGTTGCGATAGC
24404 CATTTTCGCGTTGCGAT
1 CA-TTTCGCGTTGCGAT
24421 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 6 0.18
20 23 0.70
21 4 0.12
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:24883 original size:41 final size:41
Alignment explanation
Indices: 24787--24874 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
24777 GACTCACCTG
* * *
24787 TCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCCCTA
1 TCATCCCTCAAGAGTCCCC-CCCACCGTTCAAGAGGCCACTA
* *
24829 TCCTCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTG
1 TCATCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTA
24870 TCATC
1 TCATC
24875 GTTGAAGAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 22 0.55
42 18 0.45
ACGTcount: A:0.22, C:0.43, G:0.15, T:0.20
Consensus pattern (41 bp):
TCATCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTA
Found at i:26307 original size:14 final size:14
Alignment explanation
Indices: 26288--26323 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
26278 ATTGTTTAAT
26288 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
26302 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
26316 TGATTTGT
1 TGATTTGT
26324 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:26463 original size:20 final size:20
Alignment explanation
Indices: 26428--26465 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26418 GCAAAACAGA
*
26428 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGAGAAAATGG
*
26448 CTATCGCAACTAGAAAAT
1 CTATCGCAACGAGAAAAT
26466 CGCAATGCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.18
Consensus pattern (20 bp):
CTATCGCAACGAGAAAATGG
Found at i:26562 original size:20 final size:20
Alignment explanation
Indices: 26539--26622 Score: 107
Period size: 20 Copynumber: 4.2 Consensus size: 20
26529 TTTCTAGTTA
26539 CGATAGCCATTTTCGCGTTG
1 CGATAGCCATTTTCGCGTTG
*** **
26559 CGATTTTTCA-TTTCGAATTG
1 CGA-TAGCCATTTTCGCGTTG
26579 CGATAGCCATTTTCGCGTTG
1 CGATAGCCATTTTCGCGTTG
26599 CGATAGCCATTTTCGCGTTG
1 CGATAGCCATTTTCGCGTTG
26619 CGAT
1 CGAT
26623 TTCCCCGTTG
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
19 3 0.06
20 46 0.88
21 3 0.06
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (20 bp):
CGATAGCCATTTTCGCGTTG
Found at i:26565 original size:34 final size:36
Alignment explanation
Indices: 26515--26602 Score: 90
Period size: 40 Copynumber: 2.4 Consensus size: 36
26505 GCGATTTTCA
* * *
26515 TTTCGCATTGCAATTTTC-T-AGTTACGATAGCCAT
1 TTTCGCGTTGCGATTTTCTTCAATTACGATAGCCAT
*
26549 TTTCGCGTTGCGATTTTTCATTTCGAATTGCGATAGCCAT
1 TTTCGCGTTGCGA-TTTTC--TTC-AATTACGATAGCCAT
26589 TTTCGCGTTGCGAT
1 TTTCGCGTTGCGAT
26603 AGCCATTTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
34 11 0.25
35 5 0.11
38 1 0.02
39 1 0.02
40 26 0.59
ACGTcount: A:0.18, C:0.20, G:0.19, T:0.42
Consensus pattern (36 bp):
TTTCGCGTTGCGATTTTCTTCAATTACGATAGCCAT
Found at i:26861 original size:20 final size:20
Alignment explanation
Indices: 26836--26885 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
26826 TTGAAGATGA
26836 TTGCGATTTTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
***
26856 TTGCGAAAGTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
26876 TTGCGATTTT
1 TTGCGATTTT
26886 GTATTATCTC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (20 bp):
TTGCGATTTTCAGAATCTCG
Found at i:26977 original size:20 final size:21
Alignment explanation
Indices: 26912--26984 Score: 112
Period size: 21 Copynumber: 3.5 Consensus size: 21
26902 ATAGTCAGTA
26912 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
26933 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* **
26954 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCAAAT
26974 TCGCATTGCGA
1 TCGCATTGCGA
26985 ATTAGGAAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
20 17 0.35
21 32 0.65
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:26999 original size:41 final size:42
Alignment explanation
Indices: 26911--26999 Score: 99
Period size: 41 Copynumber: 2.1 Consensus size: 42
26901 AATAGTCAGT
* * *
26911 ATCGCATTGCGATTTTCCAAATTCGCATTGCGATTTTCCAAA
1 ATCGCATTGCGATTTTACAAATTCGCATTGCGAATTACCAAA
* ** **
26953 TTCGCATTGCGA-TTTACTTATTCGCATTGCGAATTAGGAAA
1 ATCGCATTGCGATTTTACAAATTCGCATTGCGAATTACCAAA
26994 ATCGCA
1 ATCGCA
27000 ACGCGATACT
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
41 27 0.71
42 11 0.29
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (42 bp):
ATCGCATTGCGATTTTACAAATTCGCATTGCGAATTACCAAA
Found at i:27796 original size:24 final size:24
Alignment explanation
Indices: 27769--27822 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
27759 GTATTTGAAA
*
27769 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCGGAC
* *
27793 TTTGATATTGGTCAATACTCGGAT
1 TTTGATATTGGTCAATACCCGGAC
27817 TTTGAT
1 TTTGAT
27823 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCGGAC
Found at i:28014 original size:12 final size:12
Alignment explanation
Indices: 27997--28033 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
27987 ATATAATCCT
27997 GAAGAAGAAAAA
1 GAAGAAGAAAAA
*
28009 GAAGAAGAAATA
1 GAAGAAGAAAAA
28021 GAAGAAGAAAAA
1 GAAGAAGAAAAA
28033 G
1 G
28034 TCCCCGAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.03
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:30347 original size:19 final size:19
Alignment explanation
Indices: 30325--30422 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
30315 GGAAATTACT
30325 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
30344 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
30358 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
30377 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
*
30391 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
30410 ATCGCAACGCGAA
1 ATCGCAATGCGAA
30423 TTTAATTTCG
Statistics
Matches: 60, Mismatches: 9, Indels: 20
0.67 0.10 0.22
Matches are distributed among these distances:
14 18 0.30
15 2 0.03
16 4 0.07
17 4 0.07
18 2 0.03
19 30 0.50
ACGTcount: A:0.43, C:0.20, G:0.21, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:30425 original size:33 final size:33
Alignment explanation
Indices: 30326--30425 Score: 157
Period size: 33 Copynumber: 3.0 Consensus size: 33
30316 GAAATTACTA
* *
30326 TCGCAATGCGAAATGAAAATCGCAACGAGAGA-A
1 TCGCAATGCGAAATGAAAATCGCAACGCGA-ATT
*
30359 TCGCAATGCGAAATGAAAATCGCAACGCTAATT
1 TCGCAATGCGAAATGAAAATCGCAACGCGAATT
30392 TCGCAATGCGAAATGAAAATCGCAACGCGAATT
1 TCGCAATGCGAAATGAAAATCGCAACGCGAATT
30425 T
1 T
30426 AATTTCGCGT
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
32 1 0.02
33 61 0.98
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.18
Consensus pattern (33 bp):
TCGCAATGCGAAATGAAAATCGCAACGCGAATT
Found at i:30450 original size:14 final size:14
Alignment explanation
Indices: 30433--30489 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
30423 TTTAATTTCG
30433 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
30447 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
30466 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
30480 CGTTGCGATT
1 CGTTGCGATT
30490 TTCATTTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:30469 original size:33 final size:33
Alignment explanation
Indices: 30418--30507 Score: 153
Period size: 33 Copynumber: 2.7 Consensus size: 33
30408 AAATCGCAAC
* *
30418 GCGAATTTAATTTCGCGTTGCGATTCTCTCGTT
1 GCGATTTTCATTTCGCGTTGCGATTCTCTCGTT
30451 GCGATTTTCATTTCGCGTTGCGATTCTCTCGTT
1 GCGATTTTCATTTCGCGTTGCGATTCTCTCGTT
*
30484 GCGATTTTCATTTCGCATTGCGAT
1 GCGATTTTCATTTCGCGTTGCGAT
30508 AGTACTTTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.13, C:0.22, G:0.21, T:0.43
Consensus pattern (33 bp):
GCGATTTTCATTTCGCGTTGCGATTCTCTCGTT
Found at i:30471 original size:19 final size:19
Alignment explanation
Indices: 30447--30507 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
30437 GCGATTCTCT
30447 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
30466 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
30480 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
30499 CATTGCGAT
1 CGTTGCGAT
30508 AGTACTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
14 10 0.29
16 3 0.09
17 3 0.09
19 18 0.53
ACGTcount: A:0.11, C:0.23, G:0.21, T:0.44
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:30633 original size:14 final size:14
Alignment explanation
Indices: 30614--30650 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
30604 CATCAATTAA
30614 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
30628 ACAAATCACCTTTT
1 ACAAATCAACTTTT
30642 ACAAATCAA
1 ACAAATCAA
30651 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:32051 original size:21 final size:21
Alignment explanation
Indices: 32027--32142 Score: 58
Period size: 21 Copynumber: 5.5 Consensus size: 21
32017 GTGGGAGAGA
32027 CCTCTTCAACGATGACAGTGG
1 CCTCTTCAACGATGACAGTGG
* * ** *
32048 CCTCTTGAACGGTGGGAGGGG
1 CCTCTTCAACGATGACAGTGG
* * *
32069 ACTC-TCAAGGAATGATAAG-GG
1 CCTCTTCAACG-ATGA-CAGTGG
*
32090 CCTCTTCAACGAT-AGGAGTGG
1 CCTCTTCAACGATGA-CAGTGG
* * **
32111 ACTCTTGAGGGATGACAGTGG
1 CCTCTTCAACGATGACAGTGG
*
32132 CCTCTTGAACG
1 CCTCTTCAACG
32143 GTGGGAGGGG
Statistics
Matches: 67, Mismatches: 23, Indels: 10
0.67 0.23 0.10
Matches are distributed among these distances:
20 7 0.10
21 52 0.78
22 8 0.12
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (21 bp):
CCTCTTCAACGATGACAGTGG
Found at i:32148 original size:84 final size:84
Alignment explanation
Indices: 32037--32212 Score: 316
Period size: 84 Copynumber: 2.1 Consensus size: 84
32027 CCTCTTCAAC
32037 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCAAGGAATGATAAGGGCCTCTTCAACGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCAAGGAATGATAAGGGCCTCTTCAACGA
32102 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
* * * *
32121 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGATGAATGATAGGGGCCTCTTCAATGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCAAGGAATGATAAGGGCCTCTTCAACGA
32186 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
32205 GATGACAG
1 GATGACAG
32213 GCGAGTCGGG
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 88 1.00
ACGTcount: A:0.24, C:0.17, G:0.36, T:0.22
Consensus pattern (84 bp):
GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCAAGGAATGATAAGGGCCTCTTCAACGA
TAGGAGTGGACTCTTGAGG
Found at i:32197 original size:42 final size:42
Alignment explanation
Indices: 32046--32209 Score: 166
Period size: 42 Copynumber: 3.9 Consensus size: 42
32036 CGATGACAGT
* * * * *
32046 GGCCTCTTGAACGGTGGGAGGGGACTCTCAAGGAATGATAAG
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
* * * * *
32088 GGCCTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAGT
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
* * * *
32130 GGCCTCTTGAACGGTGGGAGGGGACTCTCGATGAATGATAGG
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
* * * *
32172 GGCCTCTTCAATGATAGGAGTGGACTCTTGAGGGATGA
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGA
32210 CAGGCGAGTC
Statistics
Matches: 95, Mismatches: 27, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
42 95 1.00
ACGTcount: A:0.24, C:0.17, G:0.37, T:0.23
Consensus pattern (42 bp):
GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
Found at i:32558 original size:95 final size:89
Alignment explanation
Indices: 32434--32615 Score: 265
Period size: 91 Copynumber: 2.0 Consensus size: 89
32424 TCAAACTTTT
* * *
32434 AACCAAACGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGA
1 AACCAAAAGACAAAAAAAAGACAAATACTAACTTCACAGTGTT----AATAAACAGTTTAGCAGA
*
32499 ATTGGCAGCAACCGAATAAATTTACTTC
62 ATTGGCAGCAACCAAATAAATTTACTTC
*
32527 AACCAAAAGACAAAATAAAAAGACAAATACTAACTTCACAGTGTTAATAAACAGTTTAGCAGTAT
1 AACCAAAAGAC-AAA-AAAAAGACAAATACTAACTTCACAGTGTTAATAAACAGTTTAGCAGAAT
32592 TGGCAGCAACCAAATAAATTTACT
64 TGGCAGCAACCAAATAAATTTACT
32616 AAGCAATCTA
Statistics
Matches: 82, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
91 41 0.50
93 10 0.12
94 3 0.04
95 28 0.34
ACGTcount: A:0.48, C:0.19, G:0.12, T:0.21
Consensus pattern (89 bp):
AACCAAAAGACAAAAAAAAGACAAATACTAACTTCACAGTGTTAATAAACAGTTTAGCAGAATTG
GCAGCAACCAAATAAATTTACTTC
Found at i:34343 original size:20 final size:19
Alignment explanation
Indices: 34298--34443 Score: 96
Period size: 19 Copynumber: 8.1 Consensus size: 19
34288 TCTTTTGGTT
*
34298 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
34317 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
** *
34337 GGAAATGACTATCGTAA--C
1 -GAAATGAAAATCGCAACGC
*
34355 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** *
34371 GAAATGACTATCGCGA--C
1 GAAATGAAAATCGCAACGC
* *
34388 G--A-GAGAATCGCAATGC
1 GAAATGAAAATCGCAACGC
34404 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
34423 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
34442 GA
1 GA
34444 TTTTGGTTTC
Statistics
Matches: 98, Mismatches: 17, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
14 16 0.16
15 2 0.02
16 4 0.04
17 3 0.03
18 3 0.03
19 42 0.43
20 26 0.27
21 2 0.02
ACGTcount: A:0.42, C:0.19, G:0.25, T:0.14
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:34380 original size:33 final size:33
Alignment explanation
Indices: 34323--34421 Score: 144
Period size: 33 Copynumber: 3.0 Consensus size: 33
34313 ACGAGATAAT
*
34323 GAGAATCGCAACGCGGAAATGACTATCGTAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACGA
*
34357 GAGAATCGCAACGCGAAATGACTATCGCGACGA
1 GAGAATCGCAACGCGAAATGACTATCGCAACGA
* **
34390 GAGAATCGCAATGCGAAATGAAAATCGCAACG
1 GAGAATCGCAACGCGAAATGACTATCGCAACG
34422 CGAAATGAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 45 0.76
34 14 0.24
ACGTcount: A:0.39, C:0.21, G:0.26, T:0.13
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACGA
Found at i:34472 original size:19 final size:19
Alignment explanation
Indices: 34439--34483 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
34429 AAAATCGCAA
*
34439 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGATTTCGCGT
*
34458 TGCGATTTTTATTTCGCGT
1 TGCGATTTTGATTTCGCGT
34477 TGCGATT
1 TGCGATT
34484 CTCTCGTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.09, C:0.16, G:0.27, T:0.49
Consensus pattern (19 bp):
TGCGATTTTGATTTCGCGT
Found at i:35062 original size:20 final size:20
Alignment explanation
Indices: 35037--35089 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
35027 GTGCTATGTA
35037 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
35057 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
* *
35077 TATCTCGTTGCGA
1 AATCGCGTTGCGA
35090 TTTTGTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (20 bp):
AATCGCGTTGCGAAAGTCAG
Found at i:35123 original size:20 final size:20
Alignment explanation
Indices: 35098--35151 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
35088 GATTTTGTAT
35098 TATCGCATTGCGATAGTAAG
1 TATCGCATTGCGATAGTAAG
*
35118 TATCGCATTGCGATAGTCAG
1 TATCGCATTGCGATAGTAAG
35138 TATCGCATTGCGAT
1 TATCGCATTGCGAT
35152 TTTCCCAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (20 bp):
TATCGCATTGCGATAGTAAG
Found at i:35136 original size:61 final size:61
Alignment explanation
Indices: 35038--35154 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
35028 TGCTATGTAA
* * * * *
35038 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
* * *
35099 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT
35155 CCCAATTCGC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (61 bp):
ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
Found at i:35170 original size:61 final size:61
Alignment explanation
Indices: 35038--35172 Score: 155
Period size: 61 Copynumber: 2.2 Consensus size: 61
35028 TGCTATGTAA
* * * * * ** *
35038 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
* * *
35099 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT-CCAAT
35161 -TCGCGTTGCGAT
1 ATCGCGTTGCGAT
35173 TTACTTATTC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
61 59 0.97
62 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (61 bp):
ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
Found at i:35262 original size:21 final size:21
Alignment explanation
Indices: 35222--35262 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
35212 ACTGTAGACC
**
35222 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
35243 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
35263 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:38476 original size:22 final size:22
Alignment explanation
Indices: 38445--38489 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
38435 TACTAGATAA
38445 AAATTCCTTAGCTTTACAGGTT
1 AAATTCCTTAGCTTTACAGGTT
* *
38467 AAATTTCTTAGTTTTACAGGTT
1 AAATTCCTTAGCTTTACAGGTT
38489 A
1 A
38490 GGCTGTATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (22 bp):
AAATTCCTTAGCTTTACAGGTT
Found at i:39911 original size:18 final size:18
Alignment explanation
Indices: 39884--39919 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
39874 TATGCAATCA
*
39884 ATAAATATCTAAATTTAT
1 ATAAAAATCTAAATTTAT
*
39902 ATAAAAATCTTAATTTAT
1 ATAAAAATCTAAATTTAT
39920 CACACGTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (18 bp):
ATAAAAATCTAAATTTAT
Found at i:41717 original size:34 final size:35
Alignment explanation
Indices: 41661--41728 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 35
41651 TGTGAAAATT
* *
41661 AAATAAATAATAATAATAATATAACCTAATATATA
1 AAATAAATAATAAAAATAATATAACATAATATATA
*
41696 AAAT-AATAATAAAAACT-ATATAACATATTATAT
1 AAATAAATAATAAAAA-TAATATAACATAATATAT
41729 TTCCAAAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
34 24 0.83
35 5 0.17
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (35 bp):
AAATAAATAATAAAAATAATATAACATAATATATA
Found at i:41754 original size:29 final size:29
Alignment explanation
Indices: 41706--41797 Score: 125
Period size: 30 Copynumber: 3.2 Consensus size: 29
41696 AAATAATAAT
41706 AAAAACTATATAAC--ATATTATATTTCC
1 AAAAACTATATAACATATATTATATTTCC
41733 AAAAACTATATAACATATATTATATTTCC
1 AAAAACTATATAACATATATTATATTTCC
* * *
41762 AAAAAACTATATAATATATTAATATATTTTC
1 -AAAAACTATATAACATA-TATTATATTTCC
41793 AAAAA
1 AAAAA
41798 TCATTTTCAA
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
27 14 0.24
29 13 0.22
30 21 0.36
31 10 0.17
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (29 bp):
AAAAACTATATAACATATATTATATTTCC
Found at i:41848 original size:32 final size:32
Alignment explanation
Indices: 41790--41892 Score: 127
Period size: 33 Copynumber: 3.1 Consensus size: 32
41780 TTAATATATT
41790 TTCAAAAATCATTTTCAAAAACCATATTATACG
1 TTCAAAAATCATTTTC-AAAACCATATTATACG
*
41823 TTCAAAAATCACTTTCAAAACCATATTATACG
1 TTCAAAAATCATTTTCAAAACCATATTATACG
* *
41855 TTTTCCAAAAT-GTTTTCAAAACCATATACTATACG
1 --TTCAAAAATCATTTTCAAAACCATAT--TATACG
41890 TTC
1 TTC
41893 TCAAAACGTT
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
32 16 0.26
33 32 0.52
34 8 0.13
35 6 0.10
ACGTcount: A:0.41, C:0.20, G:0.04, T:0.35
Consensus pattern (32 bp):
TTCAAAAATCATTTTCAAAACCATATTATACG
Found at i:41888 original size:35 final size:35
Alignment explanation
Indices: 41788--42040 Score: 166
Period size: 36 Copynumber: 7.3 Consensus size: 35
41778 TATTAATATA
* *
41788 TTTTCAAAAATCATTTTCAAAAACC--ATATTATACG
1 TTTTCAAAAAT-GTTTT-TAAAACCATATATTATACG
** *
41823 --TTCAAAAATCACTTTCAAAACC--ATATTATACG
1 TTTTCAAAAAT-GTTTTTAAAACCATATATTATACG
* * *
41855 TTTTCCAAAATGTTTTCAAAACCATATACTATACG
1 TTTTCAAAAATGTTTTTAAAACCATATATTATACG
* * *
41890 TTCTC-AAAACGTTTTTAAAAAACCATATATTATATG
1 TTTTCAAAAATGTTTTT--AAAACCATATATTATACG
** ** * *
41926 TTTTGGAAACCGTTTTTTAAAACTATATATTAAACG
1 TTTTCAAAAATG-TTTTTAAAACCATATATTATACG
*
41962 TTTTCAAAACAAT-TTTTTAAAACTATATATTATACG
1 TTTTC-AAA-AATGTTTTTAAAACCATATATTATACG
* * * *
41998 TGTTCGAAACTGTTTTTTAAA-C-TATATTATACG
1 TTTTCAAAAATGTTTTTAAAACCATATATTATACG
42031 TTTTCAAAAA
1 TTTTCAAAAA
42041 AAGTACGTTT
Statistics
Matches: 177, Mismatches: 30, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
32 16 0.09
33 42 0.24
34 19 0.11
35 23 0.13
36 64 0.36
37 7 0.04
38 6 0.03
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.40
Consensus pattern (35 bp):
TTTTCAAAAATGTTTTTAAAACCATATATTATACG
Found at i:41898 original size:34 final size:32
Alignment explanation
Indices: 41801--41909 Score: 112
Period size: 34 Copynumber: 3.3 Consensus size: 32
41791 TCAAAAATCA
* *
41801 TTTTCAAAAACCATATTATACGTTC-AAAAATCA
1 TTTTC-AAAACCATATTATACGTTCTCAAAAT-G
* *
41834 CTTTCAAAACCATATTATACGTTTTCCAAAATG
1 TTTTCAAAACCATATTATACGTTCT-CAAAATG
*
41867 TTTTCAAAACCATATACTATACGTTCTCAAAACG
1 TTTTCAAAACCATAT--TATACGTTCTCAAAATG
*
41901 TTTTTAAAA
1 TTTTCAAAA
41910 AACCATATAT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
32 18 0.28
33 18 0.28
34 19 0.30
35 9 0.14
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (32 bp):
TTTTCAAAACCATATTATACGTTCTCAAAATG
Found at i:41917 original size:36 final size:36
Alignment explanation
Indices: 41845--42040 Score: 172
Period size: 36 Copynumber: 5.6 Consensus size: 36
41835 TTTCAAAACC
* *
41845 ATATTATACGTTTTCCAAAATG-TTTTCAAAACCAT
1 ATATTATACGTTTTCCAAAACGTTTTTTAAAACCAT
* * *
41880 ATACTATACGTTCT-CAAAACGTTTTTAAAAAACCAT
1 ATATTATACGTTTTCCAAAACGTTTTT-TAAAACCAT
* ** * *
41916 ATATTATATGTTTTGGAAACCGTTTTTTAAAACTAT
1 ATATTATACGTTTTCCAAAACGTTTTTTAAAACCAT
* * *
41952 ATATTAAACGTTTT-CAAAACAATTTTTTAAAACTAT
1 ATATTATACGTTTTCCAAAAC-GTTTTTTAAAACCAT
* *
41988 ATATTATACGTGTT-CGAAACTGTTTTTT-AAA-C-T
1 ATATTATACGTTTTCCAAAAC-GTTTTTTAAAACCAT
*
42021 ATATTATACGTTTTCAAAAA
1 ATATTATACGTTTTCCAAAA
42041 AAGTACGTTT
Statistics
Matches: 131, Mismatches: 25, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
33 14 0.11
34 9 0.07
35 23 0.18
36 75 0.57
37 10 0.08
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.41
Consensus pattern (36 bp):
ATATTATACGTTTTCCAAAACGTTTTTTAAAACCAT
Found at i:41969 original size:72 final size:71
Alignment explanation
Indices: 41845--42039 Score: 200
Period size: 72 Copynumber: 2.8 Consensus size: 71
41835 TTTCAAAACC
* * ** * * * *
41845 ATATTATACGTTTTCCAAAATG-TTTTCAAAACCATATACTATACGTTCTCAAAAC-GTTTTTAA
1 ATATTATACGTGTTCGAAACCGTTTTTTAAAA-CATATATTATACGTTTTCAAAACAATTTTT-A
41908 AAAACCAT
64 AAAACCAT
* * * * *
41916 ATATTATATGTTTTGGAAACCGTTTTTTAAAACTATATATTAAACGTTTTCAAAACAATTTTTTA
1 ATATTATACGTGTTCGAAACCGTTTTTTAAAAC-ATATATTATACGTTTTCAAAACAATTTTTAA
*
41981 AAACTAT
65 AAACCAT
*
41988 ATATTATACGTGTTCGAAACTGTTTTTT-AAAC-TATATTATACGTTTTCAAAA
1 ATATTATACGTGTTCGAAACCGTTTTTTAAAACATATATTATACGTTTTCAAAA
42040 AAAGTACGTT
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
69 19 0.18
71 22 0.21
72 58 0.56
73 5 0.05
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (71 bp):
ATATTATACGTGTTCGAAACCGTTTTTTAAAACATATATTATACGTTTTCAAAACAATTTTTAAA
AACCAT
Found at i:42080 original size:38 final size:38
Alignment explanation
Indices: 42016--42121 Score: 162
Period size: 38 Copynumber: 2.8 Consensus size: 38
42006 ACTGTTTTTT
*
42016 AAACTATAT-TATACGTTTTCAAAAAAAGTACGTTTTCAA
1 AAACTATATATATATGTTTTC-AAAAAA-TACGTTTTCAA
42055 AAACTATATATATATGTTTTCAAAAAATACGTTTTCAA
1 AAACTATATATATATGTTTTCAAAAAATACGTTTTCAA
*
42093 AAACTATATAT-TATGTTTTCAAAACATAC
1 AAACTATATATATATGTTTTCAAAAAATAC
42122 ACTATATACT
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
37 17 0.27
38 22 0.34
39 15 0.23
40 10 0.16
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (38 bp):
AAACTATATATATATGTTTTCAAAAAATACGTTTTCAA
Found at i:45685 original size:25 final size:26
Alignment explanation
Indices: 45640--45689 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
45630 TGAAAATAAA
*
45640 ATAAAAATTGCATAACACATACATAC
1 ATAAAAATTACATAACACATACATAC
45666 ATAAAAATGTACAT-AC-CATACATA
1 ATAAAAAT-TACATAACACATACATA
45690 AAATAGTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 8 0.36
26 10 0.45
27 4 0.18
ACGTcount: A:0.54, C:0.18, G:0.04, T:0.24
Consensus pattern (26 bp):
ATAAAAATTACATAACACATACATAC
Found at i:47919 original size:54 final size:54
Alignment explanation
Indices: 47851--48465 Score: 352
Period size: 51 Copynumber: 11.8 Consensus size: 54
47841 ATATGTGTTC
*
47851 GCTCCCTATTTCTTCAAAGAGTATAAGACTCGAACAATCTTCAACATCGCTTCT
1 GCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACATCGCTTCT
* * *
47905 GCTCTCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACATCGCGTCT
1 GCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACATCGCTTCT
* *
47959 GCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACATTCTTCAACA-C-CTTGTCT
1 GCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACATCGC-T-TCT
* *
48013 GCTCCCTATTTCTTCAGAGAG--TAAGACTCGAAC-ATCTTCAA-A-CGGGTT-A
1 GCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACATC-GCTTCT
* * * *
48062 GCTCCCTCTTTCTTTAGGGAGTAT-AGAACTCGAAC-ATCTTCAA-A-CGGGTTC-
1 GCTCCCTATTTCTTCAGAGAGTATAAG-ACTCGAACAATCTTCAACATC-GCTTCT
* * * *
48113 GCTCCCTCTTTC-TCTAGGGAGTAT-GGAACTCGAACAATCTTCAA-A-CGGGTTC-
1 GCTCCCTATTTCTTC-AGAGAGTATAAG-ACTCGAACAATCTTCAACATC-GCTTCT
* * * *
48165 GCTCCCTCTTTC-TCTAGGGAGTAT-GGAACTCGAAC-ATCTTCAA-A-CGGGTTC-
1 GCTCCCTATTTCTTC-AGAGAGTATAAG-ACTCGAACAATCTTCAACATC-GCTTCT
* * * *
48216 GCTCCCTCTTTATAT-AGGGAGTAT-AGAACTCGAAC-ATCTTCAA-A-CGGGTTC-
1 GCTCCCTATTTCT-TCAGAGAGTATAAG-ACTCGAACAATCTTCAACATC-GCTTCT
* * *
48267 GCTCCCTCTTTC-TCTAGAGAGTAT-AGAACTCGAACAATCTTCGAAC--GGGTTC-
1 GCTCCCTATTTCTTC-AGAGAGTATAAG-ACTCGAACAATCTTC-AACATCGCTTCT
* * * *
48319 GCTCCCTCTTTCTCTAAG-GAGTAT-AGAACTCGAA-AATCTTCAA-ATGGGTTC-
1 GCTCCCTATTTCT-TCAGAGAGTATAAG-ACTCGAACAATCTTCAACATCGCTTCT
* * * *
48370 GCTCCCTCTTTC-TCTAGGGAGTAT-GGAACTCGAACAATCTTCAA-A-CGGGTTC-
1 GCTCCCTATTTCTTC-AGAGAGTATAAG-ACTCGAACAATCTTCAACATC-GCTTCT
* *
48422 GCTCCCTCTTTC-TCTAGGGAGTAT-AGAACTCGAACAATCTTCAA
1 GCTCCCTATTTCTTC-AGAGAGTATAAG-ACTCGAACAATCTTCAA
48466 ACGGGTTCGC
Statistics
Matches: 510, Mismatches: 26, Indels: 52
0.87 0.04 0.09
Matches are distributed among these distances:
49 20 0.04
50 10 0.02
51 195 0.38
52 160 0.31
53 6 0.01
54 119 0.23
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (54 bp):
GCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACATCGCTTCT
Found at i:48096 original size:51 final size:51
Alignment explanation
Indices: 48038--49075 Score: 1591
Period size: 51 Copynumber: 20.3 Consensus size: 51
48028 AGAGAGTAAG
* * *
48038 ACTCGAACATCTTCAAACGGGTTAGCTCCCTCTTTCTTTAGGGAGTATAGA
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
48089 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
48140 ACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
1 ACTCGAAC-ATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
* * *
48192 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTATATAGGGAGTATAGA
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
* *
48243 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGAGAGTATAGA
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
* * *
48294 ACTCGAACAATCTTCGAACGGGTTCGCTCCCTCTTTCTCTAAGGAGTATAGA
1 ACTCGAAC-ATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
* *
48346 ACTCGAAAATCTTCAAATGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
*
48397 ACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGA
1 ACTCGAAC-ATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
48449 ACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTAT-GA
1 ACTCGAAC-ATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
* * * *
48500 ACCCGAACATCTTTAAAC-AGTTCGCTCCCTCTTTCTCTAAGGAGTATGGA
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
* * *
48550 ACTCGAACATCTTTAAACAGGTTCGCTCCCTCTTTCTATAGGGAGTATGGA
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
* * * *
48601 ACTCAAACATCTTCAAACGGATTCGTTCCCTCTTTCTTTAGGGAGTATGGA
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
*
48652 ACTTCGAACATCTTCAAACGGGTTTGCTCCCTCTTTCTCTAGGGAGTATGGA
1 AC-TCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
** * * * *
48704 ACTTAAACATCTTCAAACGGGTTCGTTCCCTCTTTATTTAGGGAGTATAGA
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
* *
48755 ACTCGAACATCTTTAAATGGGTTCGCTCCCT-TTTCTCTAGGGAGTATGGA
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
* *
48805 ACTCGAACAATCTTCAAAAGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGA
1 ACTCGAAC-ATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
48857 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
* *
48908 ACTCGAATAATCTTCAAAAGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
1 ACTCGAA-CATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
*
48960 ACTCGAACATCTTCAAACGGGTTCGCTCCCTC-TT-TCTAGGGAGTATAGA
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
* * *
49009 ACTCGAAAATCTTTAAACGGGTTCGCTCCCTCTTTCTGTAGGGAGTATGGA
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
49060 ACTCGAACAATCTTCA
1 ACTCGAAC-ATCTTCA
49076 CTGGCTTCAC
Statistics
Matches: 905, Mismatches: 70, Indels: 23
0.91 0.07 0.02
Matches are distributed among these distances:
49 71 0.08
50 56 0.06
51 463 0.51
52 315 0.35
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (51 bp):
ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGA
Found at i:48144 original size:154 final size:154
Alignment explanation
Indices: 48038--49075 Score: 1631
Period size: 154 Copynumber: 6.8 Consensus size: 154
48028 AGAGAGTAAG
* *
48038 ACTCGAACATCTTCAAACGGGTTAGCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACATCTTC
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTC
48103 AAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATCTTCAAACGGGTTCGCT
66 AAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATCTTCAAACGGGTTCGCT
48168 CCCTCTTTCTCTAGGGAGTATGGA
131 CCCTCTTTCTCTAGGGAGTATGGA
* *
48192 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTATATAGGGAGTATAGAACTCGAACATCTTC
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTC
* * *
48257 AAACGGGTTCGCTCCCTCTTTCTCTAGAGAGTATAGAACTCGAACAATCTTCGAACGGGTTCGCT
66 AAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATCTTCAAACGGGTTCGCT
* *
48322 CCCTCTTTCTCTAAGGAGTATAGA
131 CCCTCTTTCTCTAGGGAGTATGGA
* * *
48346 ACTCGAAAATCTTCAAATGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATCTT
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAAC-ATCTT
*
48411 CAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACAATCTTCAAACGGGTTCGC
65 CAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATCTTCAAACGGGTTCGC
48476 TCCCTCTTTCTCTAGGGAGTAT-GA
130 TCCCTCTTTCTCTAGGGAGTATGGA
* * * * * *
48500 ACCCGAACATCTTTAAAC-AGTTCGCTCCCTCTTTCTCTAAGGAGTATGGAACTCGAACATCTTT
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTC
* * * * *
48564 AAACAGGTTCGCTCCCTCTTTCTATAGGGAGTATGGAACTCAAAC-ATCTTCAAACGGATTCGTT
66 AAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATCTTCAAACGGGTTCGCT
*
48628 CCCTCTTTCTTTAGGGAGTATGGA
131 CCCTCTTTCTCTAGGGAGTATGGA
* * **
48652 ACTTCGAACATCTTCAAACGGGTTTGCTCCCTCTTTCTCTAGGGAGTATGGAACTTAAACATCTT
1 AC-TCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTT
* * * * * *
48717 CAAACGGGTTCGTTCCCTCTTTATTTAGGGAGTATAGAACTCGAAC-ATCTTTAAATGGGTTCGC
65 CAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATCTTCAAACGGGTTCGC
48781 TCCCT-TTTCTCTAGGGAGTATGGA
130 TCCCTCTTTCTCTAGGGAGTATGGA
*
48805 ACTCGAACAATCTTCAAAAGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTT
1 ACTCGAAC-ATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTT
* *
48870 CAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAATAATCTTCAAAAGGGTTCGC
65 CAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATCTTCAAACGGGTTCGC
48935 TCCCTCTTTCTCTAGGGAGTATGGA
130 TCCCTCTTTCTCTAGGGAGTATGGA
* *
48960 ACTCGAACATCTTCAAACGGGTTCGCTCCCTC-TT-TCTAGGGAGTATAGAACTCGAAAATCTTT
1 ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTC
*
49023 AAACGGGTTCGCTCCCTCTTTCTGTAGGGAGTATGGAACTCGAACAATCTTCA
66 AAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATCTTCA
49076 CTGGCTTCAC
Statistics
Matches: 811, Mismatches: 66, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
151 37 0.05
152 134 0.17
153 166 0.20
154 358 0.44
155 116 0.14
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (154 bp):
ACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTC
AAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATCTTCAAACGGGTTCGCT
CCCTCTTTCTCTAGGGAGTATGGA
Found at i:48153 original size:103 final size:102
Alignment explanation
Indices: 47923--49075 Score: 1594
Period size: 103 Copynumber: 11.2 Consensus size: 102
47913 TTTCTTCAGA
* * *
47923 GAGTAT-GAGACTCGAACAATCTTCAACATCGCG-TCTGCTCCCTATTTCT-TCAGAGAGTAT-G
1 GAGTATAGA-ACTCGAAC-ATCTTCAA-A-CGGGTTC-GCTCCCTCTTTCTCT-AGGGAGTATGG
** * *
47984 AGACTCGAACATTCTTCAACAC-CTTGTCTGCTCCCTATTTCT-TCAGA
60 A-ACTCGAACA-TCTTCAA-ACGGGT-TC-GCTCCCTCTTTCTCT-AGG
* * *
48031 GAGTA-AG-ACTCGAACATCTTCAAACGGGTTAGCTCCCTCTTTCTTTAGGGAGTATAGAACTCG
1 GAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCG
48094 AACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
66 AACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
*
48131 GAGTATGGAACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTC
1 GAGTATAGAACTCGAAC-ATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTC
* *
48196 GAACATCTTCAAACGGGTTCGCTCCCTCTTTATATAGG
65 GAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* *
48234 GAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGAGAGTATAGAACTCG
1 GAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCG
* *
48299 AACAATCTTCGAACGGGTTCGCTCCCTCTTTCTCTAAG
66 AAC-ATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* *
48337 GAGTATAGAACTCGAAAATCTTCAAATGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCG
1 GAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCG
48402 AACAATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
66 AAC-ATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
*
48440 GAGTATAGAACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTAT-GAACCC
1 GAGTATAGAACTCGAAC-ATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTC
* * *
48504 GAACATCTTTAAAC-AGTTCGCTCCCTCTTTCTCTAAG
65 GAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* * * * *
48541 GAGTATGGAACTCGAACATCTTTAAACAGGTTCGCTCCCTCTTTCTATAGGGAGTATGGAACTCA
1 GAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCG
* * *
48606 AACATCTTCAAACGGATTCGTTCCCTCTTTCTTTAGG
66 AACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* * *
48643 GAGTATGGAACTTCGAACATCTTCAAACGGGTTTGCTCCCTCTTTCTCTAGGGAGTATGGAACTT
1 GAGTATAGAAC-TCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTC
* * * *
48708 AAACATCTTCAAACGGGTTCGTTCCCTCTTTATTTAGG
65 GAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* *
48746 GAGTATAGAACTCGAACATCTTTAAATGGGTTCGCTCCCT-TTTCTCTAGGGAGTATGGAACTCG
1 GAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCG
*
48810 AACAATCTTCAAAAGGGTTCGCTCCCTCTTTCTCTAGG
66 AAC-ATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
48848 GAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCG
1 GAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCG
* *
48913 AATAATCTTCAAAAGGGTTCGCTCCCTCTTTCTCTAGG
66 AA-CATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* *
48951 GAGTATGGAACTCGAACATCTTCAAACGGGTTCGCTCCCTC-TT-TCTAGGGAGTATAGAACTCG
1 GAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCG
* * *
49014 AAAATCTTTAAACGGGTTCGCTCCCTCTTTCTGTAGG
66 AACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
*
49051 GAGTATGGAACTCGAACAATCTTCA
1 GAGTATAGAACTCGAAC-ATCTTCA
49076 CTGGCTTCAC
Statistics
Matches: 957, Mismatches: 70, Indels: 43
0.89 0.07 0.04
Matches are distributed among these distances:
100 105 0.11
101 113 0.12
102 199 0.21
103 474 0.50
104 44 0.05
105 8 0.01
106 8 0.01
108 6 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (102 bp):
GAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCG
AACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
Done.