Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000544.1 Hibiscus syriacus cultivar Beakdansim tig00001055_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84706

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4046--4096
10
5.7
10
82
17
60
43
0
0
56
0.99
4050--4098
12
4.0
12
86
2
71
44
0
0
55
0.99
12113--12274
20
8.1
20
87
0
198
22
16
19
41
1.90
12323--12789
190
2.4
189
85
4
609
36
15
20
26
1.93
13089--13143
10
5.7
10
73
16
53
45
0
0
54
0.99
34530--34716
102
1.8
102
81
2
232
36
20
12
30
1.90
42171--42211
22
1.9
21
90
5
64
26
14
34
24
1.94
42086--42264
95
1.9
93
84
8
238
31
15
24
29
1.95
42639--42850
55
3.9
55
90
0
325
30
20
19
29
1.97
42769--42900
55
2.4
54
83
1
138
29
18
21
29
1.97
49041--49092
22
2.5
21
85
11
72
26
19
28
25
1.98
49007--49182
95
1.9
95
82
2
228
33
18
22
25
1.96
49005--49206
95
2.1
96
78
4
221
33
17
23
26
1.96
53558--53605
19
2.6
18
81
12
53
72
0
10
16
1.10
53550--53600
20
2.6
19
79
17
59
70
0
13
15
1.17
61393--61631
55
4.3
55
85
1
309
28
20
22
28
1.98
61393--61661
110
2.5
110
86
3
355
29
20
21
28
1.98
66538--66589
20
2.6
20
90
0
86
42
11
23
23
1.86
66997--67388
54
7.2
54
84
2
464
33
12
15
37
1.86
66991--67388
162
2.5
162
85
1
537
34
12
15
37
1.86
69099--69139
22
2.0
22
90
9
68
29
34
2
34
1.71
69374--69410
17
2.2
17
95
0
65
27
13
21
37
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70370--70421
20
2.6
20
90
0
86
42
23
7
26
1.81
70568--70617
23
2.2
23
89
10
77
34
4
16
46
1.65
75834--75886
27
2.0
27
100
0
106
7
7
35
49
1.60
80981--81090
44
2.4
45
83
9
132
39
21
10
28
1.87
82318--82372
28
2.0
28
85
3
76
47
10
0
41
1.39
84062--84193
2
66.0
2
100
0
264
50
0
0
50
1.00

Tables:   1

The End!