Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005440.1 Hibiscus syriacus cultivar Beakdansim tig00012467_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57320
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:9660 original size:29 final size:32
Alignment explanation
Indices: 9592--9673 Score: 116
Period size: 33 Copynumber: 2.6 Consensus size: 32
9582 ACATGACATC
*
9592 TATTAATAATTCAAATTTATTTTATTAATATTT
1 TATTAATAACTCAAATTTA-TTTATTAATATTT
9625 TATTAATAACTCAAATTTA-TT-TTAATATTT
1 TATTAATAACTCAAATTTATTTATTAATATTT
9655 T-TTAATAACTCAAAGTTTA
1 TATTAATAACTCAAA-TTTA
9674 AATTACTTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
29 13 0.28
30 14 0.30
31 2 0.04
33 18 0.38
ACGTcount: A:0.40, C:0.06, G:0.01, T:0.52
Consensus pattern (32 bp):
TATTAATAACTCAAATTTATTTATTAATATTT
Found at i:9684 original size:29 final size:28
Alignment explanation
Indices: 9615--9685 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 28
9605 AATTTATTTT
*
9615 ATTAATATTTTATTAATAACTCAAATTTAT
1 ATTAAT-TTTT-TTAATAACTCAAATTTAA
*
9645 TTTAATATTTTTTAATAACTCAAAGTTTAA
1 ATTAAT-TTTTTTAATAACTCAAA-TTTAA
*
9675 ATTACTTTTTT
1 ATTAATTTTTT
9686 ATTTTAATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 18 0.50
30 18 0.50
ACGTcount: A:0.38, C:0.07, G:0.01, T:0.54
Consensus pattern (28 bp):
ATTAATTTTTTTAATAACTCAAATTTAA
Found at i:20775 original size:37 final size:37
Alignment explanation
Indices: 20733--20830 Score: 105
Period size: 36 Copynumber: 2.7 Consensus size: 37
20723 TATATTTTTT
20733 TATTATTTTCAGTTTTT-TATTTATTACTATTA-TATTA
1 TATTATTTTCA-TTTTTAT-TTTATTACTATTATTATTA
* * *
20770 TATTATTTTTATTTTTATTTTTTTATTATTATTATTA
1 TATTATTTTCATTTTTATTTTATTACTATTATTATTA
* *
20807 TA-TATTTT-ATTATTATTATATTAC
1 TATTATTTTCATTTTTATTTTATTAC
20831 CTACACTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
35 12 0.23
36 22 0.42
37 18 0.35
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.68
Consensus pattern (37 bp):
TATTATTTTCATTTTTATTTTATTACTATTATTATTA
Found at i:20778 original size:29 final size:30
Alignment explanation
Indices: 20746--20829 Score: 100
Period size: 29 Copynumber: 2.8 Consensus size: 30
20736 TATTTTCAGT
*
20746 TTTTTATTTATTACTATTATATTA-TATTA
1 TTTTTATTTATTATTATTATATTATTATTA
* *
20775 TTTTTATTT-TTATTTTTTTATTATTATTA
1 TTTTTATTTATTATTATTATATTATTATTA
*
20804 TTATATATTTTATTATTATTATATTA
1 TT-TTTA-TTTATTATTATTATATTA
20830 CCTACACTCA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
28 11 0.24
29 16 0.36
30 3 0.07
31 3 0.07
32 12 0.27
ACGTcount: A:0.29, C:0.01, G:0.00, T:0.70
Consensus pattern (30 bp):
TTTTTATTTATTATTATTATATTATTATTA
Found at i:20798 original size:3 final size:3
Alignment explanation
Indices: 20753--20829 Score: 74
Period size: 3 Copynumber: 27.0 Consensus size: 3
20743 AGTTTTTTAT
* * * *
20753 TTA TTA CTA TTA -TA TTA -TA TTA TTT TTA TTT TTA TT- TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
20798 TTA TTA TTA TATA TT- TTA TTA TTA TTA -TA TTA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
20830 CCTACACTCA
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
2 10 0.16
3 48 0.79
4 3 0.05
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:20811 original size:39 final size:39
Alignment explanation
Indices: 20747--20825 Score: 99
Period size: 39 Copynumber: 2.0 Consensus size: 39
20737 ATTTTCAGTT
* *
20747 TTTTATTTATTACTATTATATTATATTATTTTTATTTTTA
1 TTTTATTTATTACTATTATATTATATT-TTATTATTATTA
*
20787 TTTT-TTTATTATTATTAT-TATATATTTTATTATTATTA
1 TTTTATTTATTACTATTATAT-TATATTTTATTATTATTA
20825 T
1 T
20826 ATTACCTACA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
38 12 0.34
39 19 0.54
40 4 0.11
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (39 bp):
TTTTATTTATTACTATTATATTATATTTTATTATTATTA
Found at i:21460 original size:12 final size:13
Alignment explanation
Indices: 21443--21474 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
21433 ATTCTATTAA
21443 TTCTATTT-TATT
1 TTCTATTTCTATT
21455 TTCTATTTCTATT
1 TTCTATTTCTATT
21468 TT-TATTT
1 TTCTATTT
21475 AGTTATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (13 bp):
TTCTATTTCTATT
Found at i:21603 original size:32 final size:32
Alignment explanation
Indices: 21524--21604 Score: 78
Period size: 32 Copynumber: 2.5 Consensus size: 32
21514 TTTATTTTCT
* *
21524 TTTCGTTTATTTTTTTACCTTTATCTTATTTA
1 TTTCATTTATTTTTTTACCTTTATCTCATTTA
* *
21556 TTTCATTT-TTATTTTTTCCTTTAT-TCATTTCC
1 TTTCATTTATT-TTTTTACCTTTATCTCATTT-A
21588 TTAT-ATTTATTTTTTTA
1 TT-TCATTTATTTTTTTA
21605 TGTTTTTTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
31 7 0.17
32 30 0.75
33 3 0.08
ACGTcount: A:0.16, C:0.12, G:0.01, T:0.70
Consensus pattern (32 bp):
TTTCATTTATTTTTTTACCTTTATCTCATTTA
Found at i:31696 original size:13 final size:13
Alignment explanation
Indices: 31678--31702 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31668 TGATAAAAAG
31678 AAAAAAATAAGGA
1 AAAAAAATAAGGA
31691 AAAAAAATAAGG
1 AAAAAAATAAGG
31703 TGGGTTTAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (13 bp):
AAAAAAATAAGGA
Found at i:32711 original size:116 final size:120
Alignment explanation
Indices: 32568--32857 Score: 392
Period size: 116 Copynumber: 2.4 Consensus size: 120
32558 CCAAATAATA
* *
32568 CTTGGATTTCAACTTCATGACGAAGGATATCCAATTCAAGACTCAAATTCACAACGAAGGGGTCA
1 CTTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGACTCAAATTCACAACAAAGGGGTCA
* * * *
32633 TCCACGATTTCAACTTCACGATGAAGGATATTGTG-C-C-AGCAAC-ATTCATCT
66 TCCACGATTTCAACTTCACAATGAAGGATATCGTGCCACAAGCAACAATACAACT
* * * *
32684 TTTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGATTCAATTTCACAACAAATGGGTCA
1 CTTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGACTCAAATTCACAACAAAGGGGTCA
*
32749 TCCACGATTTCAACTTCACAATGAAGGATATCGTGCCCACAAGCAGCAATACAACT
66 TCCACGATTTCAACTTCACAATGAAGGATATCGTG-CCACAAGCAACAATACAACT
* * * *
32805 CTTGGATTTCAATTTCACGACGAATGATATTCAATTCAA-AGCTCAACTTCACA
1 CTTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGA-CTCAAATTCACA
32858 GCGGAGGAGC
Statistics
Matches: 151, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
116 92 0.61
118 1 0.01
119 1 0.01
120 6 0.04
121 51 0.34
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.27
Consensus pattern (120 bp):
CTTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGACTCAAATTCACAACAAAGGGGTCA
TCCACGATTTCAACTTCACAATGAAGGATATCGTGCCACAAGCAACAATACAACT
Found at i:34151 original size:150 final size:150
Alignment explanation
Indices: 33880--34179 Score: 528
Period size: 150 Copynumber: 2.0 Consensus size: 150
33870 AATACATAGC
33880 AAATAGTAAGATCTAAGTACTCAAAGCTTGTAACATTCGAAAGCAGAAAGAAATAAAAAGGTATA
1 AAATAGTAAGATCTAAGTACTCAAAGCTTGTAACATTCGAAAGCAGAAAGAAATAAAAAGGTATA
**
33945 TTTTACCTTGATTCGGTGTTTTAGCCTTTTGCATGTCGCTTTTCTCATATTTTTTTTCGTTTTTG
66 TTTTACCTTGATTCGGTGTTTTAGCCTTTTAAATGTCGCTTTTCTCATATTTTTTTTCGTTTTTG
34010 CTTCGAGATGGCCGATGAAA
131 CTTCGAGATGGCCGATGAAA
* *
34030 AAATAGTAAGATCTAAGTACTCAAAGCTTGTAACATTCGAAAGCAGAAAGAAATAAGAATGTATA
1 AAATAGTAAGATCTAAGTACTCAAAGCTTGTAACATTCGAAAGCAGAAAGAAATAAAAAGGTATA
* * * *
34095 TTTTACCTTGATTCGGTGTTTTAGCCTTTTAAATGTTGTTTTTCTCATCTTTTTTTTCGTTTTTT
66 TTTTACCTTGATTCGGTGTTTTAGCCTTTTAAATGTCGCTTTTCTCATATTTTTTTTCGTTTTTG
34160 CTTCGAGATGGCCGATGAAA
131 CTTCGAGATGGCCGATGAAA
34180 GGGGGCATTT
Statistics
Matches: 142, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
150 142 1.00
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (150 bp):
AAATAGTAAGATCTAAGTACTCAAAGCTTGTAACATTCGAAAGCAGAAAGAAATAAAAAGGTATA
TTTTACCTTGATTCGGTGTTTTAGCCTTTTAAATGTCGCTTTTCTCATATTTTTTTTCGTTTTTG
CTTCGAGATGGCCGATGAAA
Found at i:34894 original size:38 final size:36
Alignment explanation
Indices: 34852--34943 Score: 96
Period size: 35 Copynumber: 2.5 Consensus size: 36
34842 TTATTTTCGG
*
34852 TTTATTTATTTATTACTATTGTATTATATTATTTTTAT
1 TTTATTT-TTTATTACTATTGTATT-TATTATTATTAT
* * *
34890 TTTATTTTTTAAT-CTTTTGTCTTTATTATTATTAT
1 TTTATTTTTTATTACTATTGTATTTATTATTATTAT
* * *
34925 TATATATTTTATTATTATT
1 TTTATTTTTTATTACTATT
34944 ATACTACCTA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
35 21 0.48
36 11 0.25
37 5 0.11
38 7 0.16
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.70
Consensus pattern (36 bp):
TTTATTTTTTATTACTATTGTATTTATTATTATTAT
Found at i:34920 original size:3 final size:3
Alignment explanation
Indices: 34912--34945 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
34902 TCTTTTGTCT
34912 TTA TTA TTA TTA TTA TATA TT- TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
34946 ACTACCTACA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 24 0.83
4 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:35122 original size:19 final size:18
Alignment explanation
Indices: 35074--35124 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
35064 ACTTTCTTTT
*
35074 TTTTGTTTTATTCTTTTAA
1 TTTTATTTTATT-TTTTAA
*
35093 TTTTATCTTATTTTTT-A
1 TTTTATTTTATTTTTTAA
35110 TTTCTACTTTTATTT
1 TTT-TA-TTTTATTT
35125 AGTTATTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 4 0.15
18 6 0.22
19 17 0.63
ACGTcount: A:0.16, C:0.08, G:0.02, T:0.75
Consensus pattern (18 bp):
TTTTATTTTATTTTTTAA
Found at i:35182 original size:5 final size:5
Alignment explanation
Indices: 35163--35205 Score: 50
Period size: 5 Copynumber: 7.8 Consensus size: 5
35153 TTTTTATCCG
35163 TTTAT TTTAT ATTTAT TTTAT TTCCTAT TATTAT TTTAT TTTA
1 TTTAT TTTAT -TTTAT TTTAT TT--TAT T-TTAT TTTAT TTTA
35206 ATATTTTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
5 20 0.59
6 9 0.26
7 4 0.12
8 1 0.03
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (5 bp):
TTTAT
Found at i:35184 original size:16 final size:16
Alignment explanation
Indices: 35163--35211 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 16
35153 TTTTTATCCG
35163 TTTATTTTATATTTAT
1 TTTATTTTATATTTAT
35179 TTTATTTCCTAT-TATTAT
1 TTTATTT--TATAT-TTAT
35197 TTTATTTTAATATTT
1 TTTATTTT-ATATTT
35212 TTTAAAAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
16 8 0.29
17 5 0.18
18 15 0.54
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTATTTTATATTTAT
Found at i:35723 original size:39 final size:38
Alignment explanation
Indices: 35648--35725 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 38
35638 TTTCTTTTAA
* *
35648 TTTTATTTTTTTCCTTTATTCATTTCCTTATATTTATT
1 TTTTATTTTTTTACTTTATTCATTTACTTATATTTATT
35686 TTTTATGTTTTTTACTTTCATTC-TTTAACTTAT-TTTATT
1 TTTTAT-TTTTTTACTTT-ATTCATTT-ACTTATATTTATT
35725 T
1 T
35726 ATTGCACTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
38 6 0.17
39 20 0.57
40 9 0.26
ACGTcount: A:0.17, C:0.12, G:0.01, T:0.71
Consensus pattern (38 bp):
TTTTATTTTTTTACTTTATTCATTTACTTATATTTATT
Found at i:35740 original size:43 final size:43
Alignment explanation
Indices: 35693--35784 Score: 107
Period size: 43 Copynumber: 2.1 Consensus size: 43
35683 ATTTTTTATG
*
35693 TTTTTTACTTTCATTCTTTAAC-TTATTTTATTTA-TTGCACTTA
1 TTTTTTA-TTTCATTATTTAACTTTATTTTATTTATTTGCA-TTA
** *
35736 TTTTTTATTTTTTTATTTTACTTTATTTTATTTATTTGCATTA
1 TTTTTTATTTCATTATTTAACTTTATTTTATTTATTTGCATTA
*
35779 CTTTTT
1 TTTTTT
35785 CCTCTAGTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
42 10 0.24
43 27 0.64
44 5 0.12
ACGTcount: A:0.18, C:0.10, G:0.02, T:0.70
Consensus pattern (43 bp):
TTTTTTATTTCATTATTTAACTTTATTTTATTTATTTGCATTA
Found at i:35758 original size:24 final size:24
Alignment explanation
Indices: 35715--35772 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
35705 ATTCTTTAAC
*
35715 TTATTTTATTTATTGCACTTATTTT
1 TTATTTTATTTATTGCACTT-TATT
**
35740 TTATTTT-TTTATTTTACTTTATT
1 TTATTTTATTTATTGCACTTTATT
35763 TTA-TTTATTT
1 TTATTTTATTT
35773 GCATTACTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 3 0.10
23 9 0.31
24 10 0.34
25 7 0.24
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (24 bp):
TTATTTTATTTATTGCACTTTATT
Found at i:44728 original size:33 final size:33
Alignment explanation
Indices: 44686--44761 Score: 152
Period size: 33 Copynumber: 2.3 Consensus size: 33
44676 ACCACTCGTC
44686 GTTAACAGGCATGACGAAAAACACACGTGGACT
1 GTTAACAGGCATGACGAAAAACACACGTGGACT
44719 GTTAACAGGCATGACGAAAAACACACGTGGACT
1 GTTAACAGGCATGACGAAAAACACACGTGGACT
44752 GTTAACAGGC
1 GTTAACAGGC
44762 TTACCCGAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.16
Consensus pattern (33 bp):
GTTAACAGGCATGACGAAAAACACACGTGGACT
Found at i:48180 original size:17 final size:16
Alignment explanation
Indices: 48148--48191 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
48138 ATGGTAATAA
48148 AATATTA-TTTTAAAT
1 AATATTATTTTTAAAT
48163 AAT-TATATTTTTATAAT
1 AATAT-TATTTTTA-AAT
48180 AATATTATTTTT
1 AATATTATTTTT
48192 CATCCCATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 1 0.04
15 5 0.20
16 5 0.20
17 13 0.52
18 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
AATATTATTTTTAAAT
Found at i:56822 original size:19 final size:19
Alignment explanation
Indices: 56800--56845 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
56790 CGATATACCA
*
56800 GGTAAAATATGATAAAACC
1 GGTAAAAAATGATAAAACC
56819 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
*
56839 GTTAAAA
1 GGTAAAA
56846 CGTTACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.54, C:0.11, G:0.15, T:0.20
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:57060 original size:182 final size:179
Alignment explanation
Indices: 56590--57060 Score: 637
Period size: 177 Copynumber: 2.6 Consensus size: 179
56580 TCAATCCAAA
* * ** **
56590 TTAAAAATGTATCGATCCAAAACGATATAACAGGTAAAACTATGACCAAACCGGTATTGAAATGA
1 TTAAAAATATATCGATCC-AAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGA
* * * * *
56655 TAAAACCGGTAAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACT
65 TAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACT
*
56720 TCGTGAATTTAAAAGAGAAGTAGTTTTAAATCCTATAAGTGTCGATACTT
130 TCGTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAGTGTCGATACTT
* *
56770 TTAAAAA-ATATCGATCCAAACGATATACCAGGT-AAAATATGATAAAACCGGTAACAAAATGAT
1 TTAAAAATATATCGATCCAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGAT
* *
56833 AAAACCGTTAAAACGTTACCGGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGACACTT
66 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTT
* *
56897 TGTGAATTTAAAAGAGAAGCAGTTTTAGCA-CCTATAATGTGTCGATA-TT
131 CGTGAATTTAAAAGAGAAGCAGTTTTA-AATCCTATAA-GTGTCGATACTT
* * *
56946 TTAAAAAAAATATATTGATCCACAACGATATAACATGTAAAAATATGATAAAACCGATATCAAAA
1 TT---AAAAATATATCGATCCA-AACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAA
* *
57011 TGATAAAACCGGTAAAATGATATCGGATATATTGAAAGTGTCGATACTTT
62 TGATAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
57061 CGTAAGTACG
Statistics
Matches: 257, Mismatches: 26, Indels: 14
0.87 0.09 0.05
Matches are distributed among these distances:
176 54 0.21
177 74 0.29
178 15 0.06
179 14 0.05
180 17 0.07
181 13 0.05
182 70 0.27
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (179 bp):
TTAAAAATATATCGATCCAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGAT
AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTT
CGTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAGTGTCGATACTT
Done.