Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005441.1 Hibiscus syriacus cultivar Beakdansim tig00012469_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66252
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:653 original size:31 final size:31
Alignment explanation
Indices: 598--702 Score: 104
Period size: 31 Copynumber: 3.4 Consensus size: 31
588 CGATAATTTA
* * * *
598 ATAATTTTGTAATAGTT-AATAAATTTAATT
1 ATAATTTTATAACAATTCAATAAATTTAATG
** *
628 ATTGTTTTATAACCATTCAATAAATTTAATG
1 ATAATTTTATAACAATTCAATAAATTTAATG
* *
659 ATAATTTTATAACAATTCGATAAATTGAATG
1 ATAATTTTATAACAATTCAATAAATTTAATG
* *
690 ATCATATTATAAC
1 ATAATTTTATAAC
703 TTTTAAAAGA
Statistics
Matches: 60, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
30 11 0.18
31 49 0.82
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.44
Consensus pattern (31 bp):
ATAATTTTATAACAATTCAATAAATTTAATG
Found at i:904 original size:22 final size:24
Alignment explanation
Indices: 876--919 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
866 GATTTTTTTA
876 TTTTATATTAAT-T-TATTTAAAT
1 TTTTATATTAATATATATTTAAAT
898 TTTTATATTAATATATATTTAA
1 TTTTATATTAATATATATTTAA
920 TTAATTTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 12 0.60
23 1 0.05
24 7 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTATATTAATATATATTTAAAT
Found at i:917 original size:28 final size:27
Alignment explanation
Indices: 870--923 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
860 GAAAATGATT
* *
870 TTTTTATTTTATATTAATTTATTTAAA
1 TTTTTATTTAATATTAATTTAATTAAA
897 TTTTTATATTAATA-TATATTTAATTAA
1 TTTTTAT-TTAATATTA-ATTTAATTAA
924 TTTAGTAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (27 bp):
TTTTTATTTAATATTAATTTAATTAAA
Found at i:2711 original size:23 final size:23
Alignment explanation
Indices: 2685--2732 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
2675 ATAAAGTACA
*
2685 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
2708 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
2731 AT
1 AT
2733 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:3173 original size:23 final size:23
Alignment explanation
Indices: 3138--3210 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
3128 ATAATTTACA
*
3138 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
3161 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* *
3184 ATATAAGCGCTATCTATTACATC
1 ATATAAGCGCTACCTATTACATT
3207 ATAT
1 ATAT
3211 TTATTATATT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:3599 original size:23 final size:23
Alignment explanation
Indices: 3573--3635 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
3563 ATATAACCAC
3573 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
3596 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
3619 TACCTATTACATCATAT
1 TACCTATTACATTATAT
3636 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:4027 original size:22 final size:23
Alignment explanation
Indices: 3999--4057 Score: 84
Period size: 22 Copynumber: 2.6 Consensus size: 23
3989 TAACCACTAC
3999 CTATTACATTATATAAACGATA-
1 CTATTACATTATATAAACGATAT
* *
4021 CTATTACATTATATAAGCGCTAT
1 CTATTACATTATATAAACGATAT
*
4044 CTATTACATCATAT
1 CTATTACATTATAT
4058 TTTTACCTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 20 0.61
23 13 0.39
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (23 bp):
CTATTACATTATATAAACGATAT
Found at i:4036 original size:45 final size:42
Alignment explanation
Indices: 3975--4057 Score: 103
Period size: 45 Copynumber: 1.9 Consensus size: 42
3965 AAAAAGGATA
*
3975 GATACTTTACAATATAACCACTACCTATTACATTATATAAAC
1 GATACTTTACAATATAACCACTACCTATTACATCATATAAAC
* * *
4017 GATACTATTACATTATATAAGCGCTATCTATTACATCATAT
1 GATACT-TTACA--ATATAACCACTACCTATTACATCATAT
4058 TTTTACCTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 6 0.18
43 5 0.15
45 23 0.68
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (42 bp):
GATACTTTACAATATAACCACTACCTATTACATCATATAAAC
Found at i:4307 original size:423 final size:425
Alignment explanation
Indices: 2799--4676 Score: 3027
Period size: 425 Copynumber: 4.4 Consensus size: 425
2789 TTACTTATAT
*
2799 TATTGAAAGTGTCCATACTTTTATAAAAAGGATCGATAC-TCTTTTAAAGTTATGTAATTTACGT
1 TATTGAAAGTGTCCATACTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGT
2863 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
66 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
2928 ACAAAAAATTATTTGATTGTTTTGATATTT-TATAAATAATATTTAGAATTTTAATTTAATAATA
131 ACAAAAAATTATTTGATTGTTTTGATATTTATA-AAATAATATTTAGAATTTTAATTTAATAATA
*
2992 ATATATATCGTAACGT--AAAA-AAATCATTGGACGCCTATAATTACTAAATTAATATCTTAAAA
195 ATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAA
*
3054 ACTCACTCAAAAGATAACCTTAAATTAATGTTTCCACAGCGAAAAAAAGTATGGACAC-TTTATA
260 ACTCACTCAAAAGATAACCTTAAATTAAT-TTTCCACAGTG-AAAAAAGTATGGACACTTTTATA
* * *
3118 AAAAGGATAGATAATTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACAT
323 AAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACAT
*
3183 TATATAAGCGCTATCTATTACATCATA-TTT---ATTA
388 TATATAAGCGCTACCTATTACATCATATTTTACCATTA
3217 TATTGAAAGTGTCCATACTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGT
1 TATTGAAAGTGTCCATACTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGT
*
3282 TTCAATTGTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
66 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
* *
3347 ACAAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAAAAATTTTAATTTAATAA
131 AC-AAAAAATTATTTGATTGTTTTGATA-TTTATAAAATAATATTT-AGAATTTTAATTTAATAA
*
3412 TAATATATATCGTAACATAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTT-A
193 TAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAA
* *
3476 AAACTCACTCAAATGATAACCTTAAATTAATATTTTCCACAATGAAAAAAGTATGGACACTTTTA
258 AAACTCACTCAAAAGATAACCTTAAATT-A-ATTTTCCACAGTGAAAAAAGTATGGACACTTTTA
3541 TAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTAC
321 TAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTAC
3606 ATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTA
386 ATTATATAAGCGCTACCTATTACATCATA-TTTTACC-ATTA
** *
3648 TATTGAAAGTGTCCATACATTTTATAAAAATAATCGATAATTCTTTTAAAGTTATGTAATTTATG
1 TATTGAAAGTGTCCATAC-TTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATG
*
3713 TTTCAATTTTTTTTTAATAGTGTTTCATGTTTTCCACCT--AATATTAATGTAATAA-TTCATTT
65 TTTCAA-TTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTT
*
3775 GCACAAAAAATTATTTGATTGTTTTGATATTTATAAATATATTA-TTAGAATTTTTAA-TTAATA
129 GCACAAAAAATTATTTGATTGTTTTGATATTTATAAA-ATAATATTTAGAA-TTTTAATTTAATA
3838 AT-A-ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAAATTAATATCTT
192 ATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT-AAATTAATATCTT
*
3901 -AAAA-TCACTC-AAGGATAACCTTAAATTAATTTTCCACAGTGAAAAAAAGTATGGACACTTTT
256 AAAAACTCACTCAAAAGATAACCTTAAATTAATTTTCCACAGTG-AAAAAAGTATGGACACTTTT
3963 ATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATA-CTATTA
320 ATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTA
*
4027 CATTATATAAGCGCTATCTATTACATCATATTTTTACC-TTA
385 CATTATATAAGCGCTACCTATTACATCATA-TTTTACCATTA
* *
4068 TATTGAAAGTGTTCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAATTTATG
1 TATTGAAAGTGTCCATAC-TTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATG
4133 TTTCAATTTTTTTTAAGTA-TG-TTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTT
65 TTTCAATTTTTTTTAA-TAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTT
4196 GCACAAAAAATTATTTGATTGTTTTGATATTTATAAAATAATATTTAGAATTTTTAATTTAATAA
129 GCACAAAAAATTATTTGATTGTTTTGATATTTATAAAATAATATTTAGAA-TTTTAATTTAATAA
4261 TAATATATATCGTAACGTAAAAAATAAATCATTAGA-GCCTATAATTACTAAATTAATATCTTAA
193 TAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAA
*
4325 AAACTCACTCAAACGATAACCTTAAATTAATGTTTTCCACAGTG-AAAAAGTATGGACACTTTTA
258 AAACTCACTCAAAAGATAACCTTAAATTAA--TTTTCCACAGTGAAAAAAGTATGGACACTTTTA
4389 TAAAAAGGATAGATACTTTAC-ATATAACCACTACCTATTACATTATATAAACGATACC-ATTAC
321 TAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTAC
4452 ATTATATAAGCGCTACCTA-TACATCATATTTTACCTATTA
386 ATTATATAAGCGCTACCTATTACATCATATTTTACC-ATTA
*
4492 TATTGAAA-TGTCCATACTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATG
1 TATTGAAAGTGTCCATACTTTTATAAAAAGGATCGATACTTCTTTT-AAAGTTATGTAATTTATG
* *
4556 TTTCAA-TTTTTTTAATAGTATTTCATGTTTTCCACCTACAATATTAATTTAATAATTT-ATTTA
65 TTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTG
* *
4619 CACACAAAATTATTTGA-TGTTTTGATATTTTATAAAAT-A-ATTTAGAATTTAAATTTAA
130 CACAAAAAATTATTTGATTGTTTTGATA-TTTATAAAATAATATTTAGAATTTTAATTTAA
4677 CAACATTAAC
Statistics
Matches: 1379, Mismatches: 38, Indels: 85
0.92 0.03 0.06
Matches are distributed among these distances:
418 55 0.04
419 112 0.08
420 125 0.09
421 83 0.06
422 185 0.13
423 175 0.13
424 171 0.12
425 252 0.18
426 20 0.01
427 26 0.02
428 16 0.01
429 31 0.02
430 11 0.01
431 37 0.03
432 49 0.04
433 31 0.02
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.41
Consensus pattern (425 bp):
TATTGAAAGTGTCCATACTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGT
TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
ACAAAAAATTATTTGATTGTTTTGATATTTATAAAATAATATTTAGAATTTTAATTTAATAATAA
TATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAAA
CTCACTCAAAAGATAACCTTAAATTAATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
AGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTAT
ATAAGCGCTACCTATTACATCATATTTTACCATTA
Found at i:4468 original size:22 final size:23
Alignment explanation
Indices: 4410--4480 Score: 83
Period size: 22 Copynumber: 3.2 Consensus size: 23
4400 GATACTTTAC
* *
4410 ATATAACCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
*
4433 ATATAAACGATACC-ATTACATT
1 ATATAAACGCTACCTATTACATT
* *
4455 ATATAAGCGCTACCTA-TACATC
1 ATATAAACGCTACCTATTACATT
4477 ATAT
1 ATAT
4481 TTTACCTATT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
22 29 0.71
23 12 0.29
ACGTcount: A:0.41, C:0.23, G:0.04, T:0.32
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:6045 original size:3 final size:3
Alignment explanation
Indices: 6030--6095 Score: 69
Period size: 3 Copynumber: 22.0 Consensus size: 3
6020 ACTTGTTTGG
* * * * *
6030 ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GTC AGC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* *
6078 TTC ATC GTC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC
6096 GTAATCTTCA
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:6047 original size:12 final size:12
Alignment explanation
Indices: 6031--6119 Score: 88
Period size: 12 Copynumber: 7.4 Consensus size: 12
6021 CTTGTTTGGA
* *
6031 TCATCTTCATCA
1 TCATCGTCATCT
* *
6043 TCATCATCATCA
1 TCATCGTCATCT
* *
6055 TCGTCATCATCT
1 TCATCGTCATCT
*
6067 TCATCGTCAGCT
1 TCATCGTCATCT
*
6079 TCATCGTCATCA
1 TCATCGTCATCT
*
6091 TCATCGTAATCT
1 TCATCGTCATCT
*
6103 TCATCGTCAGCT
1 TCATCGTCATCT
6115 TCATC
1 TCATC
6120 TTCTACGACC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 65 1.00
ACGTcount: A:0.22, C:0.33, G:0.08, T:0.37
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:6083 original size:36 final size:36
Alignment explanation
Indices: 6043--6119 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
6033 ATCTTCATCA
* *
6043 TCATCATCATCATCGTCATCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATAATCTTCATCGTCAGCT
* *
6079 TCATCGTCATCATCATCGTAATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATAATCTTCATCGTCAGCT
6115 TCATC
1 TCATC
6120 TTCTACGACC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.22, C:0.32, G:0.09, T:0.36
Consensus pattern (36 bp):
TCATCATCATCATCATCATAATCTTCATCGTCAGCT
Found at i:8107 original size:194 final size:194
Alignment explanation
Indices: 7693--8877 Score: 1717
Period size: 194 Copynumber: 6.2 Consensus size: 194
7683 GATGTTTTTG
** * *
7693 GGATCGACACTTTATAGG-TGCACCCTGTT-TTCACTTCATTCTGGACCAAAAATATCGACACCA
1 GGATCGACACTTTAT-GGTTGCACCCTGTTGGCCA-TTCATTCTGGA-AAAAAATATCGACACAA
*
7756 ACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG--TACTTGTACCGGTT
63 ACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACCGGTATACTTGTACCGGTT
*
7819 AGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATCGACACTTTTAT
128 AGATTGAAAAATTACA-ATTACATTATACTTTT-GGTTCGATGTTTTTGGGATCGACACTTTTAT
7884 ATAT
191 ATAT
** *
7888 GGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAAAAAATATCGATACAAACT
1 GGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAAAAAAATATCGACACAAACT
7953 AAAATAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACCGGTAT-CTTGTACC-GTTAG
66 AAAA-AGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACCGGTATACTTGTACCGGTTAG
8016 ATTGAAAAATTAC-ATTACATTATACTTTTGGATTCGATGTTTTTGGGATCGACACTTTTTATAT
130 ATTGAAAAATTACAATTACATTATACTTTTGG-TTCGATGTTTTTGGGATCGACAC-TTTTATAT
8080 AT
193 AT
* *
8082 GGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGACCAAAAATATCGACACCAAC
1 GGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGA-AAAAAATATCGACACAAAC
* * *
8147 TAAAAAGTGTCGACACATTATTTAGACATAATCTCTCATAAAACCGATATACTTGTACC-GTTAG
65 TAAAAAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACCGGTATACTTGTACCGGTTAG
8211 ATTGAAAAATTACATATTACATTATACTTTTAGGTTCGATGTTTTTGGGATCGACAC---T-T-T
130 ATTGAAAAATTACA-ATTACATTATACTTTT-GGTTCGATGTTTTTGGGATCGACACTTTTATAT
8271 AT
193 AT
* *
8273 GG-TTG-CAC-CT-T-G-T------T-TT--CCATTCATTCTGGAACAAAAATATCGACACAAAC
1 GGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAA-AAAAATATCGACACAAAC
8323 TAAAATAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACC-GTATACTTGTACCGGTTA
65 TAAAA-AGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACCGGTATACTTGTACCGGTTA
8387 GATTGAAAAATTACATATTACATTATACTTTTGGTTCGATG-TTTTGGGATCGACACTTTT-TAT
129 GATTGAAAAATTACA-ATTACATTATACTTTTGGTTCGATGTTTTTGGGATCGACACTTTTATAT
8450 AT
193 AT
8452 GGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAACAAAAATATCGACACAAAC
1 GGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAA-AAAAATATCGACACAAAC
*
8517 TAAAAAGTGTCGACACATTATTTAGACATATTCTCTC-ATAAACCGGTATACTTGTACCGGTTAG
65 TAAAAAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACCGGTATACTTGTACCGGTTAG
8581 ATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATG-TTTTGGGATCGACACTTTTTAT
130 ATTGAAAAATTACA-ATTACATTATACTTTTGG--TTCGATGTTTTTGGGATCGACAC-TTTTAT
8645 ATAT
191 ATAT
*
8649 GGTTCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAACAAAAATATCG--ACAAAC
1 GGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAA-AAAAATATCGACACAAAC
8712 TAAAAAGTGTCGACACATT-TTTAGACATATTCTCTC--AAAACCGGTATACTTGTACCGGTTAG
65 TAAAAAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACCGGTATACTTGTACCGGTTAG
8774 ATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGATCGACACTTTTTAT
130 ATTGAAAAATTACA-ATTACATTATACTTTTGG--TTCGATGTTTTTGGGATCGACAC-TTTTAT
8839 ATAT
191 ATAT
*
8843 GGTTCGACACTTTATGGTTGCACCCTGTTGGCCAT
1 GGATCGACACTTTATGGTTGCACCCTGTTGGCCAT
8878 ATTGTAAATT
Statistics
Matches: 924, Mismatches: 26, Indels: 81
0.90 0.03 0.08
Matches are distributed among these distances:
175 15 0.02
176 57 0.06
177 74 0.08
178 4 0.00
179 6 0.01
180 2 0.00
181 3 0.00
182 1 0.00
183 1 0.00
184 1 0.00
185 2 0.00
186 1 0.00
187 1 0.00
188 1 0.00
189 3 0.00
190 2 0.00
191 6 0.01
192 11 0.01
193 191 0.21
194 235 0.25
195 189 0.20
196 15 0.02
197 101 0.11
198 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (194 bp):
GGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAAAAAAATATCGACACAAACT
AAAAAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACCGGTATACTTGTACCGGTTAGA
TTGAAAAATTACAATTACATTATACTTTTGGTTCGATGTTTTTGGGATCGACACTTTTATATAT
Found at i:8582 original size:370 final size:373
Alignment explanation
Indices: 7888--8877 Score: 1537
Period size: 370 Copynumber: 2.6 Consensus size: 373
7878 TTTTATATAT
*
7888 GGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAA-AAAAATATCGATACAAAC
1 GGATCGACACTTTATGGTTGCACCTTGTTTTCCATTCATTCTGGAACAAAAATATCGA-ACAAAC
7952 TAAAATAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACCGGTAT-CTTGTACC-GTTA
65 TAAAATAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACCGGTATACTTGTACCGGTTA
*
8015 GATTGAAAAATTAC--ATTACATTATACTTTTGGATTCGATGTTTTTGGGATCGACACTTTTTAT
130 GATTGAAAAATTACATATTACATTATACTTTTGGTTTCGATGTTTTTGGGATCGACACTTTTTAT
*
8078 ATATGGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGACCAAAAATATCGACAC
195 ATATGGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAACAAAAATATCGACAC
*
8143 CAACTAAAAAGTGTCGACACATTATTTAGACATAATCTCTCATAAAACCGATATACTTGTACCGT
260 AAACTAAAAAGTGTCGACACATTATTTAGACATAATCTCTCATAAAACCGATATACTTGTACCGT
8208 TAGATTGAAAAATTACATATTACATTATACTTTTAGG-TTCGATGTTTTTG
325 TAGATTGAAAAATTACATATTACATTATACTTTT-GGTTTCGATG-TTTTG
8258 GGATCGACACTTTATGGTTGCACCTTGTTTTCCATTCATTCTGGAACAAAAATATCGACACAAAC
1 GGATCGACACTTTATGGTTGCACCTTGTTTTCCATTCATTCTGGAACAAAAATATCGA-ACAAAC
8323 TAAAATAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACC-GTATACTTGTACCGGTTA
65 TAAAATAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACCGGTATACTTGTACCGGTTA
8387 GATTGAAAAATTACATATTACATTATACTTTTGG-TTCGATG-TTTTGGGATCGACAC-TTTT-T
130 GATTGAAAAATTACATATTACATTATACTTTTGGTTTCGATGTTTTTGGGATCGACACTTTTTAT
8448 ATATGGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAACAAAAATATCGACAC
195 ATATGGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAACAAAAATATCGACAC
* *
8513 AAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCAT-AAACCGGTATACTTGTACCGG
260 AAACTAAAAAGTGTCGACACATTATTTAGACATAATCTCTCATAAAACCGATATACTTGTACC-G
8577 TTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTG
324 TTAGATTGAAAAATTACATATTACATTATACTTTTGG-TTTCGATGTTTTG
*
8628 GGATCGACACTTTTTATATATGGTTCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGG
1 GGATCGACAC----T-T-TATGGTT-G-CAC-CT-T-G-T------T-TT--CCATTCATTCTGG
8693 AACAAAAATATCG-ACAAACTAAAA-AGTGTCGACACATT-TTTAGACATATTCTCTC--AAAAC
45 AACAAAAATATCGAACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAAC
8753 CGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTT
110 CGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-TTTCGATGTT
*
8818 TTTGGGATCGACACTTTTTATATATGGTTCGACACTTTATGGTTGCACCCTGTTGGCCAT
174 TTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTGGCCAT
8878 ATTGTAAATT
Statistics
Matches: 577, Mismatches: 8, Indels: 49
0.91 0.01 0.08
Matches are distributed among these distances:
369 20 0.03
370 206 0.36
371 82 0.14
372 33 0.06
373 7 0.01
374 19 0.03
375 1 0.00
376 7 0.01
377 1 0.00
378 3 0.01
379 1 0.00
380 1 0.00
381 1 0.00
382 1 0.00
385 6 0.01
386 52 0.09
387 17 0.03
388 22 0.04
389 28 0.05
390 4 0.01
391 65 0.11
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (373 bp):
GGATCGACACTTTATGGTTGCACCTTGTTTTCCATTCATTCTGGAACAAAAATATCGAACAAACT
AAAATAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACCGGTATACTTGTACCGGTTAG
ATTGAAAAATTACATATTACATTATACTTTTGGTTTCGATGTTTTTGGGATCGACACTTTTTATA
TATGGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAACAAAAATATCGACACA
AACTAAAAAGTGTCGACACATTATTTAGACATAATCTCTCATAAAACCGATATACTTGTACCGTT
AGATTGAAAAATTACATATTACATTATACTTTTGGTTTCGATGTTTTG
Found at i:8591 original size:193 final size:195
Alignment explanation
Indices: 8258--8877 Score: 1083
Period size: 193 Copynumber: 3.2 Consensus size: 195
8248 GATGTTTTTG
* **
8258 GGATCGACACTTTATGGTTGCACCTTGTTTTCCATTCATTCTGGAACAAAAATATCGACACAAAC
1 GGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAACAAAAATATCGACACAAAC
8323 TAAAATAGTGTCGACACATTATTTAGACATATTCTCTCAAAAAACC-GTATACTTGTACCGGTTA
66 TAAAA-AGTGTCGACACATTATTTAGACATATTCTCTC--AAAACCGGTATACTTGTACCGGTTA
8387 GATTGAAAAATTACATATTACATTATACTTTTGG-TTCGATGTTTTGGGATCGACAC-TTTT-TA
128 GATTGAAAAATTACATATTACATTATACTTTTGGTTTCGATGTTTTGGGATCGACACTTTTTATA
8449 TAT
193 TAT
8452 GGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAACAAAAATATCGACACAAAC
1 GGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAACAAAAATATCGACACAAAC
8517 TAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAACCGGTATACTTGTACCGGTTAGA
66 TAAAAAGTGTCGACACATTATTTAGACATATTCTCTCA-AAACCGGTATACTTGTACCGGTTAGA
8582 TTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTGGGATCGACACTTTTTATAT
130 TTGAAAAATTACATATTACATTATACTTTTGG-TTTCGATGTTTTGGGATCGACACTTTTTATAT
8647 AT
194 AT
*
8649 GGTTCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAACAAAAATATCG--ACAAAC
1 GGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAACAAAAATATCGACACAAAC
8712 TAAAAAGTGTCGACACATT-TTTAGACATATTCTCTCAAAACCGGTATACTTGTACCGGTTAGAT
66 TAAAAAGTGTCGACACATTATTTAGACATATTCTCTCAAAACCGGTATACTTGTACCGGTTAGAT
8776 TGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATAT
131 TGAAAAATTACATATTACATTATACTTTTGG-TTTCGATG-TTTTGGGATCGACACTTTTTATAT
8841 AT
194 AT
*
8843 GGTTCGACACTTTATGGTTGCACCCTGTTGGCCAT
1 GGATCGACACTTTATGGTTGCACCCTGTTGGCCAT
8878 ATTGTAAATT
Statistics
Matches: 415, Mismatches: 4, Indels: 14
0.96 0.01 0.03
Matches are distributed among these distances:
191 1 0.00
192 5 0.01
193 151 0.36
194 146 0.35
195 47 0.11
196 4 0.01
197 61 0.15
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (195 bp):
GGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGAACAAAAATATCGACACAAAC
TAAAAAGTGTCGACACATTATTTAGACATATTCTCTCAAAACCGGTATACTTGTACCGGTTAGAT
TGAAAAATTACATATTACATTATACTTTTGGTTTCGATGTTTTGGGATCGACACTTTTTATATAT
Found at i:9034 original size:19 final size:19
Alignment explanation
Indices: 8988--9036 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
8978 TTATATTCAC
*
8988 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
*
9007 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
9026 ATACAAAATTA
1 ATACAAAATTA
9037 ACCCTACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:10864 original size:33 final size:33
Alignment explanation
Indices: 10827--10892 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
10817 CATCTTAATA
*
10827 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
10860 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
10893 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:13025 original size:24 final size:24
Alignment explanation
Indices: 12988--13040 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
12978 CCGTTCTATC
12988 TATTTTCAGAGGATAT-TTAGCTTA
1 TATTTTCAGAGGATATGTTA-CTTA
** *
13012 TATTTTCATCGGATATGTTATTTA
1 TATTTTCAGAGGATATGTTACTTA
13036 TATTT
1 TATTT
13041 AATCGATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (24 bp):
TATTTTCAGAGGATATGTTACTTA
Found at i:13202 original size:17 final size:18
Alignment explanation
Indices: 13180--13222 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
13170 ATATATCCGG
13180 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
13197 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
13217 TATCAT
1 TATCAT
13223 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:13240 original size:20 final size:19
Alignment explanation
Indices: 13185--13231 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
13175 TCCGGTATCA
13185 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
13204 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
13225 TTTTACC
1 TTTTACC
13232 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:13964 original size:229 final size:228
Alignment explanation
Indices: 13514--14004 Score: 860
Period size: 229 Copynumber: 2.1 Consensus size: 228
13504 ACTTTTATAC
*
13514 GTATGGACACTTTTATAAAAATGATATATA-TATTTTTTAAAGTTATGTAATTTATGTTTCAATT
1 GTATGAACACTTTTATAAAAATGATATATACT-TTTTTTAAAGTTATGTAATTTATGTTTCAATT
* *
13578 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATATTTTCATTTACACAAAAAA
65 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATGTACACAAAAAA
13643 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
130 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
*
13708 GATAATAATAAATATGTTTTCCACAGTGAAATAA
195 GATAATAATAAATATATTTTCCACAGTGAAATAA
*
13742 GTATGAACATTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGAACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TT
*
13807 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATGTACACACAAAA
65 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATGTACACAAAAAA
*
13872 TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
130 TTATTTGATT-ATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
13937 AGATAATAATAAATATATTTT-CACAGTGAAATAA
194 AGATAATAATAAATATATTTTCCACAGTGAAATAA
* *
13971 GTATGAACACTTTTATAAAAAGGATAGATACTTT
1 GTATGAACACTTTTATAAAAATGATATATACTTT
14005 ACAATATAAC
Statistics
Matches: 250, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
228 58 0.23
229 119 0.48
230 73 0.29
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.45
Consensus pattern (228 bp):
GTATGAACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATGTACACAAAAAAT
TATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
ATAATAATAAATATATTTTCCACAGTGAAATAA
Found at i:18599 original size:23 final size:23
Alignment explanation
Indices: 18545--18619 Score: 96
Period size: 23 Copynumber: 3.2 Consensus size: 23
18535 TATATTTTCA
*
18545 TTTATGTTCGTTTATTGTATTCG
1 TTTATGTTCGTTTATTGTGTTCG
***
18568 TTCGCGTTCGTTTATTGTGTTCG
1 TTTATGTTCGTTTATTGTGTTCG
*
18591 TTTATGTTCGTTCATTTGTGTTCG
1 TTTATGTTCGTTTA-TTGTGTTCG
18615 TTTAT
1 TTTAT
18620 CATTTAAATG
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
23 29 0.67
24 14 0.33
ACGTcount: A:0.09, C:0.12, G:0.20, T:0.59
Consensus pattern (23 bp):
TTTATGTTCGTTTATTGTGTTCG
Found at i:18973 original size:25 final size:26
Alignment explanation
Indices: 18939--18990 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
18929 AAGAAGATCG
18939 ATTTTGCTTATAATTATAA-ATTATA
1 ATTTTGCTTATAATTATAATATTATA
*
18964 ATTTTGCTTATAGTTATAATATTATA
1 ATTTTGCTTATAATTATAATATTATA
18990 A
1 A
18991 AAAGATCGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (26 bp):
ATTTTGCTTATAATTATAATATTATA
Found at i:19141 original size:21 final size:18
Alignment explanation
Indices: 19116--19171 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
19106 CAGCGTAATT
19116 ATTTATTTAATTTTGCTTATA
1 ATTTATTTAA-TTT-C-TATA
*
19137 ATTTATTTTATTTCTATA
1 ATTTATTTAATTTCTATA
19155 ATTTA--TAATTT-TATA
1 ATTTATTTAATTTCTATA
19170 AT
1 AT
19172 ATTAATATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 6 0.18
16 5 0.15
18 9 0.27
19 1 0.03
20 3 0.09
21 9 0.27
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (18 bp):
ATTTATTTAATTTCTATA
Found at i:19204 original size:22 final size:21
Alignment explanation
Indices: 19163--19205 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
19153 TAATTTATAA
19163 TTTTATAATATTAATATTTAT
1 TTTTATAATATTAATATTTAT
19184 TTTTA-AATATTAAGATATTTAT
1 TTTTATAATATT-A-ATATTTAT
19206 AAAATGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 6 0.30
22 8 0.40
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTATAATATTAATATTTAT
Found at i:24540 original size:33 final size:32
Alignment explanation
Indices: 24503--24586 Score: 114
Period size: 33 Copynumber: 2.6 Consensus size: 32
24493 TTTTCACCCT
*
24503 AAACCCGACACGACATGAATATCACACTTAAAA
1 AAACCCGACACGACCTGAATATCACAC-TAAAA
** *
24536 AAACCCGATTCGACCCGAATATCACACTAAAA
1 AAACCCGACACGACCTGAATATCACACTAAAA
*
24568 AAACCCGACCCGACCTGAA
1 AAACCCGACACGACCTGAA
24587 CAAAATAAAG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
32 21 0.48
33 23 0.52
ACGTcount: A:0.44, C:0.32, G:0.11, T:0.13
Consensus pattern (32 bp):
AAACCCGACACGACCTGAATATCACACTAAAA
Found at i:24748 original size:63 final size:64
Alignment explanation
Indices: 24637--24776 Score: 246
Period size: 63 Copynumber: 2.2 Consensus size: 64
24627 TATAAATCTA
24637 ACCCGACCCGACCCGAAATAATAAAAAAAAAATATTTTTATTTAATAAAAACAGTAACTTAATCC
1 ACCCGACCCGACCCGAAATAAT--AAAAAAAATATTTTTATTTAATAAAAACAGTAACTTAATCC
24702 G
64 G
*
24703 ACCCGACCCGACCCGAAATAAT-AAAAAAATATTTTTATTTAATAAAAACAGTAATTTAATCCG
1 ACCCGACCCGACCCGAAATAATAAAAAAAATATTTTTATTTAATAAAAACAGTAACTTAATCCG
24766 ACCCGACCCGA
1 ACCCGACCCGA
24777 ATTATATATA
Statistics
Matches: 73, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
63 51 0.70
66 22 0.30
ACGTcount: A:0.46, C:0.22, G:0.09, T:0.24
Consensus pattern (64 bp):
ACCCGACCCGACCCGAAATAATAAAAAAAATATTTTTATTTAATAAAAACAGTAACTTAATCCG
Found at i:26975 original size:31 final size:28
Alignment explanation
Indices: 26913--26967 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
26903 TAACTCAGAC
*
26913 AATATTTTTTTTTATTTTAGACCTTTTA
1 AATAATTTTTTTTATTTTAGACCTTTTA
26941 AATAATTTTTTTTATTTTAGACCTTTT
1 AATAATTTTTTTTATTTTAGACCTTTT
26968 TCCAAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.25, C:0.07, G:0.04, T:0.64
Consensus pattern (28 bp):
AATAATTTTTTTTATTTTAGACCTTTTA
Found at i:27707 original size:12 final size:12
Alignment explanation
Indices: 27688--27718 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
27678 CTTGAATAAT
27688 TCGAATAGTAAC
1 TCGAATAGTAAC
*
27700 TTGAATAGTAAC
1 TCGAATAGTAAC
27712 TCGAATA
1 TCGAATA
27719 ACTCGATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (12 bp):
TCGAATAGTAAC
Found at i:30732 original size:120 final size:120
Alignment explanation
Indices: 30384--30733 Score: 443
Period size: 120 Copynumber: 2.9 Consensus size: 120
30374 CATTTTAATA
* ** *
30384 ACCATGGTTGAATGGAGGTGGAAACTCTTTTATCTTGTTTCAAGTTCTTATGGCTCCTAATTAGA
1 ACCATGGTTGAATAGATATGGAAACTCTTTGATCTTGTTTCAAGTTCTTATGGCTCCTAATTAGA
* * * *
30449 CTGATTGTTGTTGTCGGATCATAATTTCAAGTATTTGTTTACTTTAGTTTTCTTG
66 CTGATTGTTGTTGTCGGATCATAATTTCGAGCATTAGTTTAGTTTAGTTTTCTTG
* * *
30504 ACCATGGTTGAATTGATATGGAAACTCTTTGACCTTGTTTCAAGTTCTTATAGCTCCTAATTAG-
1 ACCATGGTTGAATAGATATGGAAACTCTTTGATCTTGTTTCAAGTTCTTATGGCTCCTAATTAGA
* * *
30568 TTGGATTGTTGTTATCGGATTATAACTTT-GAGCATTAGTTTAGTTTAGTTTTCTTG
66 CT-GATTGTTGTTGTCGGATCATAA-TTTCGAGCATTAGTTTAGTTTAGTTTTCTTG
* * * * * * **
30624 ACCATGGTTGAATAGATATGGAAACCCTTTGATCTCGTTTCAACTTATCATGGCTGCTTTTTAGA
1 ACCATGGTTGAATAGATATGGAAACTCTTTGATCTTGTTTCAAGTTCTTATGGCTCCTAATTAGA
* * *
30689 CTGATTATTGTTGTCGGAACATAATTTCGAGCATTAGTCTAGTTT
66 CTGATTGTTGTTGTCGGATCATAATTTCGAGCATTAGTTTAGTTT
30734 TTTGTTCATC
Statistics
Matches: 196, Mismatches: 30, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
119 4 0.02
120 188 0.96
121 4 0.02
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.43
Consensus pattern (120 bp):
ACCATGGTTGAATAGATATGGAAACTCTTTGATCTTGTTTCAAGTTCTTATGGCTCCTAATTAGA
CTGATTGTTGTTGTCGGATCATAATTTCGAGCATTAGTTTAGTTTAGTTTTCTTG
Found at i:36491 original size:26 final size:27
Alignment explanation
Indices: 36434--36488 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
36424 TTTAATAAAA
**
36434 TTAAAATTTAATATTTATTTAATATTT
1 TTAAAATTTAATATTTAAATAATATTT
36461 TTAAAA-TTAATATTATAAATAATATTT
1 TTAAAATTTAATATT-TAAATAATATTT
36488 T
1 T
36489 AAATAAAGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (27 bp):
TTAAAATTTAATATTTAAATAATATTT
Found at i:36571 original size:22 final size:21
Alignment explanation
Indices: 36536--36585 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 21
36526 TTTTATTGAA
36536 TTTTATTCATTTTTAATTATT
1 TTTTATTCATTTTTAATTATT
36557 TTTTATTGCATTTTTAATTATT
1 TTTTATT-CATTTTTAATTATT
*
36579 TTATATT
1 TTTTATT
36586 TTTTATAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 7 0.26
22 20 0.74
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTATTCATTTTTAATTATT
Found at i:36581 original size:31 final size:29
Alignment explanation
Indices: 36525--36591 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 29
36515 TTACATTAAA
36525 TTTTTATTGAATTTTATTCATTTTTAATTAT
1 TTTTTATTGAATTTTATTCATTTTT-A-TAT
*
36556 TTTTTATTGCATTTTTAATT-A-TTTTATAT
1 TTTTTATTG-AATTTT-ATTCATTTTTATAT
36585 TTTTTAT
1 TTTTTAT
36592 AATTAATATT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 10 0.30
30 1 0.03
31 13 0.39
32 6 0.18
33 3 0.09
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (29 bp):
TTTTTATTGAATTTTATTCATTTTTATAT
Found at i:37549 original size:34 final size:34
Alignment explanation
Indices: 37500--37570 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
37490 TTCGTTGCCC
* *
37500 ATGCAAGCATGTTTTTACACAGATGATTAAATTG
1 ATGCAAACATATTTTTACACAGATGATTAAATTG
*
37534 ATGCAAACATATTTTTACACAGATGATTCAATTG
1 ATGCAAACATATTTTTACACAGATGATTAAATTG
37568 ATG
1 ATG
37571 AAATTTAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (34 bp):
ATGCAAACATATTTTTACACAGATGATTAAATTG
Found at i:41375 original size:112 final size:112
Alignment explanation
Indices: 41166--41851 Score: 1034
Period size: 112 Copynumber: 6.1 Consensus size: 112
41156 TTTTCGGTTT
*
41166 GTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACAGGT-AAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* *
41230 GGTTTATAAATGACAAAACATGTAAAGCGCTACCAGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
* * * * * *
41277 GTGTCGATACTTTATAAAAATATATTGATACATAATAATATAACATGTAAAAAAATGGCAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* *
41342 GATTTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
* * **
41389 GTGTCCATACTTTATAAAAATGTATCGATTCATAACAATATAACAGGTAAAAAAATGACAAAGTC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
**
41454 GGTCTATAAATGACAAAACAGGTAAAGCGCTACTGGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
* *
41501 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGATAAAAT
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGT-AAAAAAATGACAAAAC
* * *
41566 CGGTCTATAAATGACAAAATAGGTAAAGCACTACCGGATATATTGAAA
65 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
* *
41614 GTGTCTATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAA-GACAAAATC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* *
41678 GGTCTATAAATGACAAAACAAGTAAAACGCTACCAGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
* *
41725 GTGTCGATACTTTATAAAAATGTATCGATCTATAACAATATAACAAGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* * * ** *
41790 GATCTATAAATGACAAAACAGATAAAGCGCTACCGGATATGCTGATA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
*
41837 GTATCGATACTTTAT
1 GTGTCGATACTTTAT
41852 TATAAGTATC
Statistics
Matches: 525, Mismatches: 47, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
111 146 0.28
112 273 0.52
113 106 0.20
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.26
Consensus pattern (112 bp):
GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
GGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
Found at i:42035 original size:182 final size:182
Alignment explanation
Indices: 41722--42170 Score: 681
Period size: 182 Copynumber: 2.5 Consensus size: 182
41712 AGATATATTG
* * *
41722 AAAGTGTCGATACTTTATAAAAATGTATCGATCTATAACAATATAACA-AGTAAAAAAATGACAA
1 AAAGTGTCGATACTTTATAAAAATGTATCTATCCATAACAATATAACAGA-TAAAAATATGACAA
** ** *
41786 AACC-GATCTATAAATGACAAAACAGATAAAGCGCTACCGGATATGCTGATAGTATCGATACTTT
65 AACCAG-TCTCGAAATGACAAAACAGATAAAAAGCTACCGGATATGCTGAAAGTATCGATACTTT
* * *
41850 ATTATAAGTATCGACACTTTTAGAATTTAAAAGAGAATAAGTTATAGCGCTAAT
129 ATTATAAGTATCGACACTTTTAGAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
*
41904 AAAGTATCGATACTTTATAAAAATGTATCTATCCATAACAATATAACAGATAAAAATATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCTATCCATAACAATATAACAGATAAAAATATGACAAA
* * * *
41969 ACCAGTCTCGAAATGACAAAACCGATAAAAAGCTATCGGATATGTTGAAAGTGTCGATACTTTAT
66 ACCAGTCTCGAAATGACAAAACAGATAAAAAGCTACCGGATATGCTGAAAGTATCGATACTTTAT
42034 TATAAGTATCGACACTTTTAGAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
131 TATAAGTATCGACACTTTTAGAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
*
42086 AAAGTGTCGATACTTTAT-AAAATGTAT-TGATCCATAACAATATAACAGGTAAAAATATGACAA
1 AAAGTGTCGATACTTTATAAAAATGTATCT-ATCCATAACAATATAACAGATAAAAATATGACAA
*
42149 AATCAGTCTCGAAATGACAAAA
65 AACCAGTCTCGAAATGACAAAA
42171 TCGGTAGTAA
Statistics
Matches: 245, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
180 1 0.00
181 63 0.26
182 179 0.73
183 2 0.01
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.27
Consensus pattern (182 bp):
AAAGTGTCGATACTTTATAAAAATGTATCTATCCATAACAATATAACAGATAAAAATATGACAAA
ACCAGTCTCGAAATGACAAAACAGATAAAAAGCTACCGGATATGCTGAAAGTATCGATACTTTAT
TATAAGTATCGACACTTTTAGAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
Found at i:44114 original size:21 final size:21
Alignment explanation
Indices: 44085--44125 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
44075 AAAAAAAGTT
44085 GAATAAAATGCAAAGTTAAAG
1 GAATAAAATGCAAAGTTAAAG
*
44106 GAATGAAATGCAAAGTTAAA
1 GAATAAAATGCAAAGTTAAA
44126 TGACTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.56, C:0.05, G:0.20, T:0.20
Consensus pattern (21 bp):
GAATAAAATGCAAAGTTAAAG
Found at i:50218 original size:45 final size:45
Alignment explanation
Indices: 50154--50239 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
50144 GCTGAGGCTT
* *
50154 CGCAGCCTCCGGAACAGCAGGAGCTGCTATTCCACATCCTTTGGG
1 CGCAGCCTCCGGAACAGCAGAAGCTGCTATTCCACAGCCTTTGGG
50199 CGCAGCCTCCGGAACAGCAGAAGCTGCTATTCCACAGCCTT
1 CGCAGCCTCCGGAACAGCAGAAGCTGCTATTCCACAGCCTT
50240 CGGAATACTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.22, C:0.35, G:0.24, T:0.19
Consensus pattern (45 bp):
CGCAGCCTCCGGAACAGCAGAAGCTGCTATTCCACAGCCTTTGGG
Found at i:51989 original size:24 final size:24
Alignment explanation
Indices: 51957--52008 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
51947 TAATACAGAG
51957 GCAATGAACGATCAACAGCCAGCA
1 GCAATGAACGATCAACAGCCAGCA
51981 GCAATGAACGATCAACAGCCAGCA
1 GCAATGAACGATCAACAGCCAGCA
52005 GCAA
1 GCAA
52009 CCGGTCGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.42, C:0.29, G:0.21, T:0.08
Consensus pattern (24 bp):
GCAATGAACGATCAACAGCCAGCA
Found at i:53054 original size:42 final size:42
Alignment explanation
Indices: 52995--53083 Score: 169
Period size: 42 Copynumber: 2.1 Consensus size: 42
52985 CAAACTATAC
52995 GTAGATGAATACTTATTCATATGTATTTTGCTCGAAATCCCT
1 GTAGATGAATACTTATTCATATGTATTTTGCTCGAAATCCCT
53037 GTAGATGAATACTTATTCATATGTATTTTGCTCGAAATCCCT
1 GTAGATGAATACTTATTCATATGTATTTTGCTCGAAATCCCT
*
53079 ATAGA
1 GTAGA
53084 CCAGGGGTCA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (42 bp):
GTAGATGAATACTTATTCATATGTATTTTGCTCGAAATCCCT
Found at i:54800 original size:15 final size:15
Alignment explanation
Indices: 54780--54809 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
54770 AACGTTGAAA
*
54780 TAAAATTATCAAATG
1 TAAAATTATAAAATG
54795 TAAAATTATAAAATG
1 TAAAATTATAAAATG
54810 GCATTAACCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (15 bp):
TAAAATTATAAAATG
Found at i:55237 original size:14 final size:14
Alignment explanation
Indices: 55218--55247 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
55208 TATCGATGAA
55218 TTTTATATAAATAT
1 TTTTATATAAATAT
*
55232 TTTTATTTAAATAT
1 TTTTATATAAATAT
55246 TT
1 TT
55248 ATAATTTCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTTATATAAATAT
Found at i:60540 original size:18 final size:18
Alignment explanation
Indices: 60517--60551 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
60507 CTAGGAAATT
60517 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
60535 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
60552 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:61695 original size:149 final size:149
Alignment explanation
Indices: 61425--61728 Score: 581
Period size: 149 Copynumber: 2.0 Consensus size: 149
61415 GAGTCGAGGG
*
61425 TCTACGCGGTTCTTAGGGACATATGTATATTCTTTGGAACCTGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTTCTTAGGGACATATGTATATTCTTGGGAACCTGTGTGAAGTCTGGAAAGACACAT
* *
61490 ACTTGATCCCTAGCATATGTATATGATTCTTACAGAATTCTATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
61555 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
61574 TCTACGCGGTTCTTAGGGACATATGTATATTCTTGGGAACCTGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTTCTTAGGGACATATGTATATTCTTGGGAACCTGTGTGAAGTCTGGAAAGACACAT
61639 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
61704 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
61723 TCTACG
1 TCTACG
61729 GGGCACTTCG
Statistics
Matches: 152, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
149 152 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (149 bp):
TCTACGCGGTTCTTAGGGACATATGTATATTCTTGGGAACCTGTGTGAAGTCTGGAAAGACACAT
ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:61751 original size:23 final size:23
Alignment explanation
Indices: 61707--61751 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
61697 ATCATTATAT
*
61707 GGCACTACGGTGCAATTCTACGG
1 GGCACTACGGTGCAATTATACGG
* *
61730 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
61752 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGG
Found at i:63436 original size:19 final size:21
Alignment explanation
Indices: 63406--63456 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
63396 AACCAAAAAA
*
63406 TATATATTTTTAATA-TTAATT
1 TATAT-TTTTTAAAATTTAATT
*
63427 TA-ATTTTTTAAAATTTGATT
1 TATATTTTTTAAAATTTAATT
63447 TATATTTTTT
1 TATATTTTTT
63457 TTTATAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 8 0.31
20 9 0.35
21 9 0.35
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (21 bp):
TATATTTTTTAAAATTTAATT
Found at i:63778 original size:25 final size:23
Alignment explanation
Indices: 63723--63787 Score: 87
Period size: 25 Copynumber: 2.8 Consensus size: 23
63713 CCATTCCCCA
* *
63723 TCTTTTTCTTCACTTTT-CTTCT
1 TCTTTCTCTTCACTTTTCCTACT
63745 TCTTTCTCTTCACTTTTCCTCACTT
1 TCTTTCTCTTCACTTTTCCT-AC-T
63770 TCTTTCTCTTCACTTTTC
1 TCTTTCTCTTCACTTTTC
63788 TTCTTTCGCA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 16 0.42
23 2 0.05
24 1 0.03
25 19 0.50
ACGTcount: A:0.06, C:0.32, G:0.00, T:0.62
Consensus pattern (23 bp):
TCTTTCTCTTCACTTTTCCTACT
Found at i:63789 original size:10 final size:10
Alignment explanation
Indices: 63726--63770 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
63716 TTCCCCATCT
63726 TTTTCTTCAC
1 TTTTCTTCAC
*
63736 TTTTCTTCTTC
1 TTTTCTTC-AC
63747 TTTCTCTTCAC
1 TTT-TCTTCAC
*
63758 TTTTCCTCAC
1 TTTTCTTCAC
63768 TTT
1 TTT
63771 CTTTCTCTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
10 17 0.57
11 8 0.27
12 5 0.17
ACGTcount: A:0.07, C:0.31, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTTCTTCAC
Done.