genome.fa.s5442.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005442.1 Hibiscus syriacus cultivar Beakdansim tig00012475_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112145

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6835--6864	13	2.2	13	94	5	51	83	6	10	0	0.81
9240--9264	6	4.2	6	100	0	50	64	0	0	36	0.94
9627--9675	24	2.0	24	88	4	71	34	14	0	51	1.43
10705--10790	31	2.8	32	84	8	106	37	2	9	51	1.47
10711--10832	31	3.9	30	76	9	93	35	5	10	48	1.62
21806--21866	31	2.0	31	86	0	86	34	1	8	55	1.39
22197--22295	21	4.8	20	75	6	81	37	22	18	22	1.94
22282--22531	60	4.2	60	79	4	245	36	23	18	21	1.95
22301--22531	20	11.6	20	83	7	215	35	22	18	22	1.95
23214--23260	24	2.0	24	87	8	69	25	14	21	38	1.92
23435--23459	12	2.1	12	100	0	50	72	0	28	0	0.86
25740--25972	33	6.9	33	79	13	269	45	18	22	13	1.84
25754--25950	19	11.4	19	74	21	202	46	18	21	13	1.84
25781--25950	52	3.2	52	99	0	331	46	17	22	13	1.83
25910--25964	14	3.6	14	73	21	56	45	20	23	10	1.82
25740--25972	85	2.7	86	85	8	325	45	18	22	13	1.84
25979--26094	53	2.2	53	98	1	225	13	24	18	43	1.86
25997--26094	19	5.4	19	84	13	143	14	22	17	45	1.84
26201--26237	14	2.6	14	91	0	65	45	21	0	32	1.52
28216--28272	14	3.7	14	77	20	60	45	22	21	10	1.82
28197--28286	33	2.7	33	94	0	162	46	21	21	11	1.81
28160--28286	19	7.2	19	76	17	121	46	23	18	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28454--28647	20	9.6	20	82	5	221	19	19	25	35	1.95
28454--28647	60	3.2	60	83	0	253	19	19	25	35	1.95
28634--28716	21	4.0	21	73	6	78	25	16	24	33	1.96
28614--28712	42	2.4	43	77	11	100	21	18	23	37	1.94
33725--33901	54	3.3	54	77	10	191	30	23	24	22	1.99
34873--34931	21	2.8	20	85	10	73	1	27	1	69	1.07
34873--34931	9	6.6	9	77	13	59	1	27	1	69	1.07
34873--34931	12	4.9	12	82	12	59	1	27	1	69	1.07
36519--36552	6	5.7	6	92	0	50	38	47	0	14	1.45
38739--38868	55	2.4	55	84	1	154	29	23	25	22	1.99
44030--44069	20	2.0	20	85	0	53	42	7	0	50	1.30
45305--45329	12	2.1	12	100	0	50	44	0	0	56	0.99
45305--45350	7	6.7	7	76	14	51	45	2	0	52	1.13
45305--45370	15	4.7	13	74	18	53	42	4	0	53	1.21
45314--45370	22	2.6	21	78	15	62	40	5	0	54	1.23
57318--57893	113	5.0	113	83	6	679	33	19	17	30	1.94
57529--57893	115	3.2	114	83	2	430	33	19	17	30	1.94
58430--58487	27	2.1	28	81	9	66	46	3	5	44	1.42
59558--59599	21	2.0	20	86	4	57	64	2	0	33	1.07
60208--60314	33	3.2	33	95	0	196	44	6	13	35	1.69
61218--61259	21	2.0	20	86	4	57	64	2	0	33	1.07
61869--61942	33	2.2	33	92	0	130	44	6	13	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78130--78341	101	2.1	101	92	1	354	37	22	16	24	1.94
80120--80230	55	2.0	55	94	0	195	24	15	11	48	1.78
84731--84764	11	3.1	11	86	0	50	61	2	0	35	1.11
84985--85043	22	2.8	21	94	5	102	42	0	5	52	1.23
86048--86085	12	3.1	13	85	14	62	26	15	18	39	1.91
86048--86095	24	2.0	24	88	8	71	27	14	16	41	1.87
86514--86553	17	2.3	18	83	12	57	30	42	5	22	1.75
86523--86557	17	2.1	17	100	0	70	22	48	5	22	1.72
87189--87216	10	2.8	10	100	0	56	0	39	17	42	1.50
87463--87984	260	2.0	259	98	1	1019	36	23	18	22	1.95
89037--89081	21	2.1	21	87	0	63	31	28	24	15	1.96
89666--89700	18	1.9	18	88	11	54	54	5	17	22	1.64
90590--90686	32	3.1	32	78	14	128	28	17	18	35	1.94
90589--90689	31	3.2	31	81	10	125	28	18	18	33	1.95
90677--90768	30	3.1	30	83	9	118	20	20	26	32	1.97
92683--92737	17	3.0	19	71	28	64	43	0	5	50	1.25
92664--92737	36	2.1	34	90	5	112	44	0	6	48	1.29
92676--92728	19	2.9	19	70	27	51	45	0	7	47	1.31
105413--105449	2	18.5	2	94	0	65	54	0	0	45	1.00
108772--108817	19	2.5	18	82	6	65	56	0	2	41	1.11

Tables:   1

The End!