genome.fa.s5443.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005443.1 Hibiscus syriacus cultivar Beakdansim tig00012476_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  184502

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6931--6973	17	2.5	17	92	3	68	46	16	4	32	1.67
9217--9250	2	17.0	2	100	0	68	50	0	0	50	1.00
12933--12968	18	2.0	18	100	0	72	27	44	5	22	1.75
20361--20489	60	2.2	59	81	5	145	31	17	4	47	1.68
22034--22067	7	4.9	7	88	0	50	0	2	41	55	1.15
22022--22075	21	2.6	21	75	0	54	5	1	31	61	1.30
32023--32090	31	2.2	30	80	12	75	55	8	0	35	1.31
32041--32075	11	3.0	11	91	8	52	51	8	0	40	1.33
36813--36861	25	1.9	25	87	4	71	55	4	0	40	1.19
36908--36952	23	2.0	23	82	8	56	57	4	2	35	1.31
47941--47994	22	2.4	23	79	14	60	46	1	7	44	1.42
50126--50196	24	3.0	24	73	8	81	22	39	9	28	1.86
50221--50292	30	2.4	30	100	0	144	23	44	8	23	1.80
50126--50262	54	2.7	48	79	14	159	23	41	9	25	1.84
50140--50293	54	2.8	55	81	5	179	24	41	9	25	1.84
50126--50293	24	6.5	24	67	18	79	23	41	9	25	1.84
52846--52901	24	2.3	24	78	0	67	23	41	8	26	1.84
56358--56391	2	17.5	2	93	6	61	52	0	0	47	1.00
61798--61844	21	2.2	21	96	0	85	27	31	19	21	1.97
61805--61891	21	4.2	21	78	15	92	26	26	19	27	1.99
61819--61907	41	2.2	41	89	4	144	26	24	16	31	1.97
61840--61905	20	3.2	20	72	19	73	25	24	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61912--61964	21	2.5	21	96	0	97	20	18	20	39	1.92
62565--62614	6	8.5	6	97	2	93	0	16	52	32	1.44
65050--65098	23	2.1	23	88	0	71	46	20	8	24	1.77
69075--69161	10	8.1	10	74	14	75	11	9	17	62	1.54
69075--69161	33	2.6	33	85	0	120	11	9	17	62	1.54
69074--69159	43	2.0	42	86	13	122	10	9	17	62	1.52
85050--85906	232	3.7	230	89	2	1201	42	15	12	28	1.84
84966--85906	463	2.0	464	85	5	1251	41	16	12	29	1.85
86368--86408	21	2.0	21	85	0	55	46	12	4	36	1.63
100087--100244	76	2.1	76	95	2	282	25	25	11	37	1.89
100328--100352	12	2.1	12	100	0	50	48	0	0	52	1.00
101236--101295	18	3.2	18	90	4	84	45	13	5	36	1.65
102016--102112	31	3.1	31	75	1	86	38	8	9	44	1.67
102371--102591	109	2.0	109	98	0	424	32	13	12	41	1.82
105591--105959	20	18.5	20	84	5	451	34	26	18	20	1.96
106642--106688	24	2.0	24	87	8	69	25	14	21	38	1.92
106863--106887	12	2.1	12	100	0	50	72	0	28	0	0.86
109163--109455	19	16.4	19	83	14	392	47	18	20	14	1.83
109191--109477	52	5.4	55	90	8	356	46	17	21	14	1.83
109163--109477	128	2.6	128	88	7	462	46	18	20	14	1.83
109484--109585	19	5.6	19	85	12	151	14	23	17	44	1.86
109690--109726	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111681--111737	14	3.7	14	77	20	60	45	22	21	10	1.82
111662--111754	33	2.8	33	95	0	168	47	21	20	10	1.80
111625--111759	19	7.6	19	76	16	128	45	23	19	11	1.82
111755--111883	19	7.3	19	75	17	125	8	17	28	45	1.77
111755--111846	33	2.8	33	93	3	150	7	18	28	45	1.76
111927--112397	92	5.1	93	97	1	903	46	18	12	22	1.83
111927--112397	185	2.6	185	98	0	917	46	18	12	22	1.83
114116--114199	19	4.7	19	78	14	97	42	22	23	10	1.85
114094--114199	52	2.0	52	92	0	176	45	20	23	10	1.82
114210--114264	14	3.6	14	73	21	56	9	25	23	41	1.83
114205--114286	33	2.5	33	89	2	119	9	25	21	42	1.84
114217--114305	20	4.8	20	72	19	75	12	24	19	43	1.85
114384--114454	33	2.2	33	92	0	115	47	18	22	11	1.80
114636--114690	22	2.5	22	81	0	74	20	16	40	23	1.91
114836--115028	20	9.6	20	82	5	219	19	19	25	35	1.95
114836--115028	60	3.2	60	83	0	251	19	19	25	35	1.95
115084--115135	20	2.6	20	96	0	95	21	13	26	38	1.90
117674--117762	40	2.3	39	86	7	121	34	34	13	16	1.88
117843--117905	33	2.0	31	84	12	83	31	4	7	55	1.50
118055--118126	23	3.2	22	86	9	85	13	25	9	51	1.72
119595--119647	2	29.0	2	78	17	53	56	0	0	43	0.99
123125--123160	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128869--129044	88	2.0	88	100	0	352	28	19	22	29	1.98
130723--130753	2	15.5	2	100	0	62	51	0	48	0	1.00
146677--146767	45	2.0	45	81	6	105	59	2	6	31	1.35
146790--146831	17	2.5	17	84	3	59	66	2	4	26	1.23
147985--148602	105	6.0	105	92	2	964	22	17	26	33	1.96
147985--148641	312	2.1	311	89	3	998	22	17	26	33	1.96
147985--148602	207	3.0	208	90	2	951	22	17	26	33	1.96
149245--149402	68	2.4	66	83	6	194	36	8	23	31	1.86
149378--149501	36	3.4	36	82	6	151	41	13	20	25	1.89
150468--150511	22	2.0	22	91	8	72	27	11	22	38	1.88
152328--152366	8	5.0	8	84	6	53	58	12	17	10	1.61
152328--152366	15	2.5	15	87	4	51	58	12	17	10	1.61
155193--155237	18	2.4	19	85	14	58	75	0	2	22	0.91
155175--155238	10	6.3	10	73	20	53	70	0	3	26	1.02
155367--155457	45	2.0	45	81	6	105	59	2	6	31	1.35
155482--155524	18	2.5	17	85	7	61	67	2	4	25	1.22
157228--157305	35	2.3	33	82	4	93	34	1	21	42	1.61
157929--157960	2	16.0	2	100	0	64	0	50	0	50	1.00
158449--158548	39	2.6	39	90	0	155	34	10	25	31	1.89
158799--158898	39	2.6	39	90	0	155	34	10	25	31	1.89
159513--160310	398	2.0	398	99	0	1587	24	22	17	35	1.95
163543--163579	20	1.9	19	89	10	58	18	21	10	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163549--163587	20	2.0	20	89	0	60	20	23	10	46	1.81
175035--175119	31	2.8	31	82	10	95	37	2	9	50	1.48

Tables:   1

The End!