Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005444.1 Hibiscus syriacus cultivar Beakdansim tig00012477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83122

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13457--13498
20
2.1
20
95
0
75
50
11
7
30
1.66
17180--17219
21
1.9
21
85
10
55
35
10
2
52
1.48
26434--26565
66
2.0
66
100
0
264
39
27
7
25
1.83
33443--33498
18
3.1
18
81
0
76
28
17
28
25
1.98
34711--34770
23
2.5
24
91
2
104
65
18
11
5
1.43
38107--38182
20
3.8
20
72
16
68
18
26
25
30
1.98
38107--38182
30
2.6
29
81
12
100
18
26
25
30
1.98
38107--38175
10
6.9
10
75
15
54
18
26
23
31
1.97
38185--38242
5
10.8
5
80
14
53
18
50
22
8
1.74
38190--38237
17
2.8
17
93
0
78
18
50
22
8
1.74
38176--38244
22
3.3
21
73
23
56
17
46
24
11
1.81
38206--38247
22
1.9
22
100
0
84
19
47
23
9
1.78
45184--45804
335
1.9
336
87
3
919
37
16
11
35
1.84
46682--46737
21
2.6
24
73
23
61
28
16
17
37
1.91
50033--50098
22
3.0
22
76
10
73
28
21
22
27
1.99
53892--53958
22
3.0
22
84
0
80
31
17
20
29
1.96
61794--61885
29
3.2
29
100
0
184
28
17
13
41
1.86
64239--64287
17
3.1
17
71
14
50
42
2
0
55
1.11
64282--64574
153
1.9
153
84
8
391
47
5
6
40
1.52
65894--65934
19
2.2
19
95
0
73
39
12
31
17
1.86
66044--66168
3
41.0
3
81
15
132
63
2
0
34
1.08
66531--67241
123
5.7
122
83
6
872
26
19
13
40
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67633--67708
22
3.5
22
87
3
100
36
10
17
35
1.84
68645--68685
18
2.3
18
86
0
55
53
4
7
34
1.50
69030--69109
15
5.0
15
76
11
52
7
12
0
80
0.91
69032--69108
20
3.9
21
80
17
85
7
12
0
79
0.94
69609--69655
19
2.5
19
100
0
94
21
10
19
48
1.78
76303--76340
15
2.5
15
91
4
58
52
2
18
26
1.58
77641--77731
31
3.0
31
95
3
159
34
6
16
42
1.74
79595--79641
22
2.1
22
96
0
85
55
8
2
34
1.42
79793--79882
31
3.0
31
93
4
150
34
6
16
42
1.75
80080--80121
21
2.0
21
95
0
75
23
21
28
26
1.99

Tables:   1

The End!