Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005445.1 Hibiscus syriacus cultivar Beakdansim tig00012478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58120

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
933--1012
28
2.9
29
71
23
75
30
1
5
63
1.23
4641--4711
35
2.0
35
97
0
133
36
18
15
29
1.92
13171--13214
23
2.0
23
86
4
63
20
20
22
36
1.95
13201--13289
23
3.9
23
89
0
124
15
29
23
31
1.95
20969--21019
26
1.9
27
88
4
77
52
19
1
25
1.56
21020--21058
20
2.0
20
84
0
51
58
28
0
12
1.34
21440--21496
2
31.0
2
76
16
52
50
0
1
47
1.11
21450--21498
10
4.6
10
85
10
62
46
0
2
51
1.12
21429--21498
22
3.2
22
76
15
74
50
1
1
47
1.19
24342--24370
2
15.0
2
92
7
51
48
0
0
51
1.00
26364--26396
10
3.3
10
95
0
57
9
39
9
42
1.68
28152--28195
16
2.9
16
80
6
56
31
0
0
68
0.90
28155--28194
19
2.0
19
85
9
53
27
0
0
72
0.85
38842--40209
105
13.0
105
93
0
2202
33
26
17
23
1.96
41884--41919
16
2.2
17
90
5
56
25
2
0
72
0.98
42170--42251
2
41.0
2
97
0
155
48
0
1
50
1.08
45472--46128
105
6.2
105
93
1
1019
33
26
17
22
1.96
48087--48144
2
29.0
2
100
0
116
50
0
0
50
1.00
48194--48225
4
8.0
4
100
0
64
25
0
0
75
0.81
49537--49628
2
46.0
2
100
0
184
50
0
0
50
1.00
51756--51828
2
36.5
2
100
0
146
50
0
0
49
1.00
52899--52939
2
20.5
2
100
0
82
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54079--54117
15
2.5
16
83
8
53
43
2
43
10
1.52

Tables:   1

The End!