genome.fa.s5447.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005447.1 Hibiscus syriacus cultivar Beakdansim tig00012480_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78083

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726--822	29	3.2	30	81	8	117	43	1	9	46	1.42
2820--3050	54	4.3	54	93	2	385	25	18	21	34	1.96
5784--6104	103	3.1	103	95	0	570	37	22	13	27	1.91
10941--11038	23	4.3	23	94	0	169	24	26	27	21	1.99
11055--11371	103	3.1	103	96	1	570	36	23	13	26	1.92
14095--14457	54	6.7	54	86	1	478	26	15	20	36	1.93
22624--22947	169	1.9	169	81	7	390	35	15	12	37	1.84
22932--23066	67	2.0	67	81	2	155	31	15	11	41	1.82
23065--23497	140	3.1	139	87	3	604	30	25	15	28	1.95
34032--34115	34	2.5	33	77	11	98	25	11	2	60	1.43
33871--34242	201	1.9	200	88	4	570	29	19	10	40	1.85
51655--51726	18	3.9	18	87	1	90	27	31	19	20	1.97
55839--56273	139	3.1	140	82	3	506	31	27	16	24	1.96
56189--56658	220	2.1	220	88	0	697	31	25	16	26	1.96
57999--58063	15	4.3	15	74	3	58	18	21	6	53	1.66
58023--58077	16	3.6	16	73	11	53	16	16	5	61	1.51
58009--58096	31	2.9	30	80	12	99	21	18	5	54	1.64
58581--58614	16	2.2	15	89	5	50	11	5	5	76	1.14
58554--58627	24	3.0	24	79	15	71	16	4	4	75	1.10
59941--59996	23	2.4	24	82	14	73	19	0	28	51	1.47
59980--60066	21	4.1	21	82	5	104	25	0	31	43	1.55
63438--63487	24	2.2	22	89	7	73	14	8	4	74	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71697--71730	17	2.0	17	88	0	50	26	2	38	32	1.71
73654--73688	17	2.1	17	88	0	52	34	14	5	45	1.68
75926--75957	11	2.9	11	90	0	55	65	0	0	34	0.93

Tables:   1

The End!