Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005449.1 Hibiscus syriacus cultivar Beakdansim tig00012483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106607

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
584--628
22
2.0
22
83
8
56
53
2
0
44
1.13
1604--1731
59
2.2
59
92
0
211
35
3
14
46
1.64
4290--4343
28
1.9
28
88
0
81
44
1
0
53
1.11
5414--5456
21
2.0
21
90
0
68
25
11
32
30
1.91
16488--16519
14
2.3
14
100
0
64
15
6
18
59
1.57
21395--21461
14
4.6
14
73
10
53
49
4
0
46
1.22
25530--25673
60
2.4
60
91
3
227
31
14
18
34
1.91
31460--31827
172
2.1
172
98
0
709
39
9
6
44
1.63
35070--35122
21
2.5
21
93
0
88
28
28
22
20
1.99
35332--35430
33
3.0
33
94
1
164
45
15
7
32
1.73
35425--35464
21
1.9
21
94
0
71
47
7
15
30
1.72
44631--44661
3
10.3
3
92
0
53
67
3
0
29
1.06
44920--44948
2
14.5
2
100
0
58
51
0
0
48
1.00
45661--45713
24
2.3
23
86
3
79
43
3
0
52
1.19
47709--47744
19
1.9
19
88
5
56
16
27
13
41
1.87
48603--48929
163
2.0
163
100
0
654
26
17
15
41
1.88
55344--58222
621
4.6
621
91
1
4565
35
16
15
32
1.90
57950--58446
224
2.2
223
90
1
798
35
16
15
32
1.91
60248--60298
21
2.4
21
76
23
54
72
3
3
19
1.16
65253--66094
420
2.0
421
99
0
1650
37
11
15
35
1.84
69001--69068
21
3.3
20
78
8
73
73
0
2
23
0.97
69029--69065
16
2.4
15
86
4
56
70
0
0
29
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69100--69130
12
2.6
12
100
0
62
70
6
0
22
1.09
75278--75302
4
6.2
4
100
0
50
72
0
28
0
0.86
76557--76771
29
7.6
29
81
3
215
35
3
13
47
1.58
76557--76771
86
2.5
86
82
6
267
35
3
13
47
1.58
77759--77812
26
2.1
26
82
6
65
27
3
14
53
1.58
83921--84224
29
10.8
29
84
6
367
38
3
12
45
1.59
83926--84224
57
5.3
57
87
1
406
38
3
12
45
1.58
85240--85293
26
2.1
26
85
0
72
25
7
18
48
1.74
86627--86742
60
1.9
60
87
6
173
39
12
13
34
1.82
88654--88690
2
18.5
2
94
0
65
45
0
2
51
1.15
95132--95164
17
1.9
17
88
11
50
66
0
0
33
0.92
97032--97058
4
6.8
4
100
0
54
22
0
0
77
0.76
97667--97718
13
3.9
13
79
18
54
67
0
3
28
1.08
101077--101118
18
2.3
18
80
8
50
54
2
4
38
1.34

Tables:   1

The End!