Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000545.1 Hibiscus syriacus cultivar Beakdansim tig00001056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46040
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.34
Found at i:8890 original size:12 final size:12
Alignment explanation
Indices: 8867--8917 Score: 68
Period size: 12 Copynumber: 4.2 Consensus size: 12
8857 CCTCTATTTG
8867 TAATAATATTATA
1 TAATAATA-TATA
*
8880 TAATAATTTATA
1 TAATAATATATA
*
8892 TATTAATATATA
1 TAATAATATATA
8904 T-ATAATATATA
1 TAATAATATATA
8915 TAA
1 TAA
8918 CATAACTCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
11 10 0.30
12 16 0.48
13 7 0.21
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
TAATAATATATA
Found at i:9411 original size:190 final size:189
Alignment explanation
Indices: 9215--9681 Score: 602
Period size: 190 Copynumber: 2.4 Consensus size: 189
9205 CGAAAAAATT
* * * *
9215 GAATGATTAACTTAATAGGAATCTAATTTCACTACTCTTTCGTGAAGATTATAGTCACAATTGGA
1 GAATGATTAACTTGATAAGAATCTAATTTCACTACTCTTTCGTGAAGATTAGACTCA-AATTGGA
* * *
9280 TTACTTCACTACTCTTCCGTGAAGATTTCATACTTTGCTGAAAAT-TTCGTTCCACTACTCTTCC
65 TTACTTCACTACTCTTCCGTGAAGATTACATACTTTGCT-AAAATATCCATTCCACTACTCTTCC
*
9344 GTGGAGAGCGAATTCTAA-CTTTGCT-TCTGCTCTTGCTTCACTATTCGTCCGTGAAGACTGA
129 GTGGAGAGCGAATTCTAATC-TTGCTCT-TGCTCTTGCTTCACTACTCGTCCGTGAAGACTGA
* * **
9405 GAATGATTAACTTGATAAGAATCTAATTTCACTACTCTTCCGTGAGGATTAGACTCGAAATCAGA
1 GAATGATTAACTTGATAAGAATCTAATTTCACTACTCTTTCGTGAAGATTAGACTC-AAATTGGA
**
9470 TTACTTCACTACTCTTCCGTGAAGATTACATACTTTGCTAAAATATCCATTCCACTACTCTTTTG
65 TTACTTCACTACTCTTCCGTGAAGATTACATACTTTGCTAAAATATCCATTCCACTACTCTTCCG
* * * * * * *
9535 TGGAGAGTGAATTTTAATCTTGCTCTTGCTTTTGCTTCACTGCTCTTCTGTGAAGGCTGA
130 TGGAGAGCGAATTCTAATCTTGCTCTTGCTCTTGCTTCACTACTCGTCCGTGAAGACTGA
* * *
9595 -AATGACTAACTTGATAAGAATCTAATTTCACTACTC-TTCTGTGAAGATCAGATTCAAAGTTGG
1 GAATGATTAACTTGATAAGAATCTAATTTCACTACTCTTTC-GTGAAGATTAGACTCAAA-TTGG
9658 ATTTACTTCCACTACTCTTCCGTG
64 A-TTACTT-CACTACTCTTCCGTG
9682 GATTTTGATT
Statistics
Matches: 241, Mismatches: 28, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
188 5 0.02
189 55 0.23
190 163 0.68
191 18 0.07
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (189 bp):
GAATGATTAACTTGATAAGAATCTAATTTCACTACTCTTTCGTGAAGATTAGACTCAAATTGGAT
TACTTCACTACTCTTCCGTGAAGATTACATACTTTGCTAAAATATCCATTCCACTACTCTTCCGT
GGAGAGCGAATTCTAATCTTGCTCTTGCTCTTGCTTCACTACTCGTCCGTGAAGACTGA
Found at i:9764 original size:20 final size:20
Alignment explanation
Indices: 9730--9891 Score: 198
Period size: 20 Copynumber: 8.1 Consensus size: 20
9720 AGACTAACAG
* * *
9730 ATGACCCAAAAGATTTATAA
1 ATGACCCGAAGGATTTACAA
*
9750 ATTACCCGAAGGATTTACAA
1 ATGACCCGAAGGATTTACAA
* *
9770 ATTACCCGAAGAATTTACAA
1 ATGACCCGAAGGATTTACAA
* *
9790 ATGACCTGAAGGATTTAAAA
1 ATGACCCGAAGGATTTACAA
* *
9810 ATTACCCGAAGAATTTACAA
1 ATGACCCGAAGGATTTACAA
* *
9830 AGGACCCGAAGGCTTTACAA
1 ATGACCCGAAGGATTTACAA
*
9850 ATGACCCGAAGGCTTTACAA
1 ATGACCCGAAGGATTTACAA
*
9870 ATGACCCGAAGGCTTTACAA
1 ATGACCCGAAGGATTTACAA
9890 AT
1 AT
9892 TCATGGAAAA
Statistics
Matches: 124, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 124 1.00
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (20 bp):
ATGACCCGAAGGATTTACAA
Found at i:17963 original size:9 final size:9
Alignment explanation
Indices: 17945--17989 Score: 63
Period size: 9 Copynumber: 4.7 Consensus size: 9
17935 ATTTGTAATA
17945 ATAATATAT
1 ATAATATAT
17954 ATAATTTATAT
1 ATAA--TATAT
17965 ATTAATATAT
1 A-TAATATAT
17975 ATAATATAT
1 ATAATATAT
17984 ATAATA
1 ATAATA
17990 ACACTTGGAC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
9 18 0.55
10 6 0.18
11 6 0.18
12 3 0.09
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
ATAATATAT
Found at i:17970 original size:21 final size:21
Alignment explanation
Indices: 17946--17986 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
17936 TTTGTAATAA
*
17946 TAATATATATAATTTATATAT
1 TAATATATATAATATATATAT
17967 TAATATATATAATATATATA
1 TAATATATATAATATATATA
17987 ATAACACTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
TAATATATATAATATATATAT
Found at i:23320 original size:14 final size:14
Alignment explanation
Indices: 23278--23325 Score: 71
Period size: 13 Copynumber: 3.4 Consensus size: 14
23268 TAATTAAATT
23278 AATATTTTAATAAAA
1 AATATTTT-ATAAAA
23293 AATATTTTA-AAAA
1 AATATTTTATAAAA
*
23306 AATATTTTATTAAA
1 AATATTTTATAAAA
23320 AATATT
1 AATATT
23326 AAAAAATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
13 13 0.42
14 10 0.32
15 8 0.26
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AATATTTTATAAAA
Found at i:23475 original size:16 final size:16
Alignment explanation
Indices: 23454--23490 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
23444 GTTCCTTCAA
23454 TTTCTCGTCTTCCCAT
1 TTTCTCGTCTTCCCAT
23470 TTTCTCGTCTTCCCAT
1 TTTCTCGTCTTCCCAT
23486 TTTCT
1 TTTCT
23491 TTCTCTACCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.05, C:0.35, G:0.05, T:0.54
Consensus pattern (16 bp):
TTTCTCGTCTTCCCAT
Found at i:26308 original size:23 final size:23
Alignment explanation
Indices: 26280--26351 Score: 83
Period size: 23 Copynumber: 3.0 Consensus size: 23
26270 ATAAATCCAA
*
26280 ACAAATTCAAAATCAATCAATCC
1 ACAAATTCAAAATCAAACAATCC
26303 ACAAATTCAAACATCAAACAAATCC
1 ACAAATTCAAA-ATCAAAC-AATCC
* *
26328 A-AAGTCACAAAATCAAACAATCC
1 ACAAAT-TCAAAATCAAACAATCC
26351 A
1 A
26352 AAAAGTTGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
23 17 0.40
24 16 0.37
25 10 0.23
ACGTcount: A:0.56, C:0.26, G:0.01, T:0.17
Consensus pattern (23 bp):
ACAAATTCAAAATCAAACAATCC
Found at i:32228 original size:22 final size:21
Alignment explanation
Indices: 32186--32225 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
32176 GAGCTTATTT
*
32186 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
32207 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
32226 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:34140 original size:21 final size:21
Alignment explanation
Indices: 34115--34168 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
34105 AAACCATTCA
*
34115 GGGGGAATCGGTA-CCCGTTGG
1 GGGGGAATCGGTACCCCCTT-G
34136 GGGGGAATCGGTACCCCCTTG
1 GGGGGAATCGGTACCCCCTTG
34157 GGGGGAATCGGT
1 GGGGGAATCGGT
34169 TCCCTCTGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 26 0.84
22 5 0.16
ACGTcount: A:0.15, C:0.20, G:0.46, T:0.19
Consensus pattern (21 bp):
GGGGGAATCGGTACCCCCTTG
Found at i:42255 original size:19 final size:19
Alignment explanation
Indices: 42231--42270 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
42221 ATACAAAAAA
*
42231 AATCCTAACT-ATTAAATTT
1 AATCCTAA-TGATTAAAATT
42250 AATCCTAATGATTAAAATT
1 AATCCTAATGATTAAAATT
42269 AA
1 AA
42271 GTGTGCAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 1 0.05
19 18 0.95
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (19 bp):
AATCCTAATGATTAAAATT
Found at i:42884 original size:16 final size:16
Alignment explanation
Indices: 42863--42899 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
42853 AAAAAATAAA
42863 TTTAACAATTATTTC-T
1 TTTAACAATT-TTTCAT
42879 TTTAACAATTTTTCAT
1 TTTAACAATTTTTCAT
42895 TTTAA
1 TTTAA
42900 AAAATAGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (16 bp):
TTTAACAATTTTTCAT
Found at i:42937 original size:54 final size:56
Alignment explanation
Indices: 42879--43273 Score: 215
Period size: 61 Copynumber: 6.9 Consensus size: 56
42869 AATTATTTCT
42879 TTTAACAATTT-TTCATTTTAAAAAATAGAATCAATT-AAGATTCTCAAG-AATAAA
1 TTTAACAATTTATTC-TTTTAAAAAATAGAATCAATTCAAGATTCTCAAGAAATAAA
* * *
42933 TTTAACAATTTATTCCTTTAAAAGATAGAATC-ATTCTAGATTCTCAAGAAATAAA
1 TTTAACAATTTATTCTTTTAAAAAATAGAATCAATTCAAGATTCTCAAGAAATAAA
* * **
42988 TTCAACGATTTATT-TTCTTATAAATTTAGAAT-AATTCAAGATTCTCAAGGAAATAAA
1 TTTAACAATTTATTCTT-TTA-AAAAATAGAATCAATTCAAGATTCTCAA-GAAATAAA
* **
43045 -TTAAAAATTAATTATT-TTCCTTACAAAGCTAGAAATC-ATTCAAGATTCTCAAGGAAATAAA
1 TTTAACAA-T--TTATTCTT--TTA-AAAAATAG-AATCAATTCAAGATTCTCAA-GAAATAAA
* * ** * *
43106 TTAAAAAATAATTTATT-TTCCTTACAAAGTTAGAATC-ATTCAATATTATCAAGGAAATAAA
1 TT---TAACAATTTATTCTT--TTA-AAAAATAGAATCAATTCAAGATTCTCAA-GAAATAAA
* * * * * ** *
43167 CTCAACTATTTATTTTTCCTTCCAAAGTTAGAATC-ATCCAAGATTCTCGACA-AAATAAA
1 TTTAACAATTTATTCTT--TT-AAAAAATAGAATCAATTCAAGATTCTC-A-AGAAATAAA
* * * *
43226 TTTAACAATTTATTTCTTTTAAAAGATATAATC-ATCCACGATTCTCAA
1 TTTAACAATTTA-TTCTTTTAAAAAATAGAATCAATTCAAGATTCTCAA
43274 TATTTATTTT
Statistics
Matches: 283, Mismatches: 36, Indels: 43
0.78 0.10 0.12
Matches are distributed among these distances:
53 3 0.01
54 38 0.13
55 25 0.09
56 28 0.10
57 31 0.11
58 11 0.04
59 51 0.18
60 15 0.05
61 55 0.19
62 21 0.07
64 1 0.00
65 4 0.01
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.36
Consensus pattern (56 bp):
TTTAACAATTTATTCTTTTAAAAAATAGAATCAATTCAAGATTCTCAAGAAATAAA
Found at i:43092 original size:61 final size:60
Alignment explanation
Indices: 42904--43214 Score: 299
Period size: 61 Copynumber: 5.3 Consensus size: 60
42894 TTTTAAAAAA
* * *
42904 TAGAATCAATT-AAGATTCTCAA-G-AATAAATTTAACAAT--TTA--TTCCTTTA-AAAGA
1 TAGAATC-ATTCAAGATTCTCAAGGAAATAAATTAAAAAATAATTATTTTCC-TTACAAAGT
* * ** * *
42958 TAGAATCATTCTAGATTCTCAA-GAAATAAATTCAACGAT--TTATTTT-CTTATAAATT
1 TAGAATCATTCAAGATTCTCAAGGAAATAAATTAAAAAATAATTATTTTCCTTACAAAGT
* * *
43014 TAGAATAATTCAAGATTCTCAAGGAAATAAATTAAAAATTAATTATTTTCCTTACAAAGC
1 TAGAATCATTCAAGATTCTCAAGGAAATAAATTAAAAAATAATTATTTTCCTTACAAAGT
43074 TAGAAATCATTCAAGATTCTCAAGGAAATAAATTAAAAAATAATTTATTTTCCTTACAAAGT
1 TAG-AATCATTCAAGATTCTCAAGGAAATAAATTAAAAAATAA-TTATTTTCCTTACAAAGT
* * * * * * *
43136 TAGAATCATTCAATATTATCAAGGAAATAAACT--CAACTATTTATTTTTCCTTCCAAAGT
1 TAGAATCATTCAAGATTCTCAAGGAAATAAATTAAAAAATAATTA-TTTTCCTTACAAAGT
*
43195 TAGAATCATCCAAGATTCTC
1 TAGAATCATTCAAGATTCTC
43215 GACAAAATAA
Statistics
Matches: 218, Mismatches: 27, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
53 3 0.01
54 18 0.08
55 19 0.09
56 24 0.11
57 15 0.07
58 3 0.01
59 42 0.19
60 10 0.05
61 64 0.29
62 20 0.09
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.36
Consensus pattern (60 bp):
TAGAATCATTCAAGATTCTCAAGGAAATAAATTAAAAAATAATTATTTTCCTTACAAAGT
Found at i:43223 original size:59 final size:59
Alignment explanation
Indices: 42940--43273 Score: 173
Period size: 59 Copynumber: 5.7 Consensus size: 59
42930 AAATTTAACA
* * * * * * *
42940 ATTTATTCCTTTA-AAAGATAGAATCATTCTAGATTCTCAA-GAAATAAATTCAACGATTT
1 ATTT-TTCC-TTACAAAGTTAGAATCATCCAAGATTATCAACAAAATAAACTCAACAATTT
* * * * * ** * * *
42999 A-TTTT-CTTATAAATTTAGAATAATTCAAGATTCTCAAGGAAATAAA-TTAAAAATTA
1 ATTTTTCCTTACAAAGTTAGAATCATCCAAGATTATCAACAAAATAAACTCAACAATTT
* * * ** * * *
43055 ATTATTTTCCTTACAAAGCTAGAAATCATTCAAGATTCTCAAGGAAATAAATTAAAAAATAATT
1 A-T-TTTTCCTTACAAAGTTAG-AATCATCCAAGATTATCAACAAAATAAACTCAACAAT--TT
* * ** *
43119 -TATTTTCCTTACAAAGTTAGAATCATTCAATATTATCAAGGAAATAAACTCAACTATTT
1 AT-TTTTCCTTACAAAGTTAGAATCATCCAAGATTATCAACAAAATAAACTCAACAATTT
* * * * *
43178 ATTTTTCCTTCCAAAGTTAGAATCATCCAAGATTCTCGACAAAATAAATTTAACAATTT
1 ATTTTTCCTTACAAAGTTAGAATCATCCAAGATTATCAACAAAATAAACTCAACAATTT
* * * *
43237 ATTTCTT--TTA-AAAGATATAATCATCCACGATTCTCAA
1 ATTT-TTCCTTACAAAGTTAGAATCATCCAAGATTATCAA
43274 TATTTATTTT
Statistics
Matches: 227, Mismatches: 36, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
55 3 0.01
56 31 0.14
57 33 0.15
58 4 0.02
59 58 0.26
60 13 0.06
61 58 0.26
62 26 0.11
64 1 0.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (59 bp):
ATTTTTCCTTACAAAGTTAGAATCATCCAAGATTATCAACAAAATAAACTCAACAATTT
Found at i:43391 original size:58 final size:55
Alignment explanation
Indices: 43273--43440 Score: 180
Period size: 54 Copynumber: 3.0 Consensus size: 55
43263 ACGATTCTCA
* *
43273 ATATTTATTTTTCTTATAATA-TTAGAATCATTTAAGATTCTCAAAT-AAATAAATT
1 ATATTTATTTTCCTTACAA-AGTTAGAATCATTTAAGATTCT-AAATGAAATAAATT
*
43328 A-ATTTATTTTCCTTACAAAGTTAAAATCATTTAAGATTCTAAATGAAATAAATTCT
1 ATATTTATTTTCCTTACAAAGTTAGAATCATTTAAGATTCTAAATGAAATAAA-T-T
* * **
43384 ATTATTTATTTTCCATACAAAGTTAGAAGCAGTACAAGATTCTAACGATGAAATAAA
1 A-TATTTATTTTCCTTACAAAGTTAGAATCA-TTTAAGATTCTAA--ATGAAATAAA
43441 CTAGTGATTC
Statistics
Matches: 96, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
53 5 0.05
54 41 0.43
55 2 0.02
56 2 0.02
58 25 0.26
59 11 0.11
61 10 0.10
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (55 bp):
ATATTTATTTTCCTTACAAAGTTAGAATCATTTAAGATTCTAAATGAAATAAATT
Found at i:43636 original size:45 final size:44
Alignment explanation
Indices: 43571--43778 Score: 179
Period size: 45 Copynumber: 4.6 Consensus size: 44
43561 GAATTAATCC
* *
43571 TTTAATTTT-AGCAACTCAATAATCAAAAGGAATTCATCATTTGAT
1 TTTAATTTTCA-CAAC-CAATAATCAAAAGGAACTAATCATTTGAT
* *
43616 TTTAATTTTCACAATCCAATAAT-AGAAAGAAACTAATCTTTTGAT
1 TTTAATTTTCACAA-CCAATAATCA-AAAGGAACTAATCATTTGAT
* * * * * *
43661 TATAATTTCCGCAATCCAATAATCGAAACGAACTGATCATTTGAT
1 TTTAATTTTCACAA-CCAATAATCAAAAGGAACTAATCATTTGAT
* ** * *
43706 TTTAATTTTCGCAACCCAATAATTGAAACGAACTAATC-TTTTAT
1 TTTAATTTTCACAA-CCAATAATCAAAAGGAACTAATCATTTGAT
* *
43750 TTTGATTTTGACAACTCAATAATCAAAAG
1 TTTAATTTTCACAAC-CAATAATCAAAAG
43779 CCTTGGATTA
Statistics
Matches: 134, Mismatches: 24, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
43 1 0.01
44 27 0.20
45 104 0.78
46 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (44 bp):
TTTAATTTTCACAACCAATAATCAAAAGGAACTAATCATTTGAT
Found at i:45674 original size:57 final size:59
Alignment explanation
Indices: 45541--45675 Score: 138
Period size: 57 Copynumber: 2.4 Consensus size: 59
45531 AATTCAATAC
** *
45541 AATAAATCGTTGGATTTATTTTCTTAGAAATTAAGTATGATTATACTTAAGAAAAGGAA
1 AATAAATCGTTAAATTTATTTTCTTAGAAATCAAGTATGATTATACTTAAGAAAAGGAA
* * ** *
45600 AATAAAT-ATTAAA-TTATTTTCTT-GAGAATCAAGTATGATTCTTTTGTAA-TAAA-G-A
1 AATAAATCGTTAAATTTATTTTCTTAGA-AATCAAGTATGATTATACT-TAAGAAAAGGAA
45655 AATAAATCGTTAAATTTATTT
1 AATAAATCGTTAAATTTATTT
45676 ATTGAAAATC
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
55 8 0.13
56 8 0.13
57 34 0.54
58 6 0.10
59 7 0.11
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.41
Consensus pattern (59 bp):
AATAAATCGTTAAATTTATTTTCTTAGAAATCAAGTATGATTATACTTAAGAAAAGGAA
Done.