genome.fa.s5451.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005451.1 Hibiscus syriacus cultivar Beakdansim tig00012487_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72352

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
866--899	3	11.0	3	87	6	50	64	0	2	32	1.08
5053--5145	41	2.2	43	85	12	131	34	8	0	56	1.30
7095--7207	31	3.7	30	80	4	127	57	7	13	22	1.60
10191--10261	37	1.9	37	100	0	142	45	12	11	30	1.77
13533--13662	64	2.0	64	98	0	251	29	17	13	39	1.89
14978--15012	2	17.0	2	94	5	61	48	2	0	48	1.16
21375--21723	83	4.2	83	81	5	326	25	18	23	32	1.97
21929--22277	168	2.1	169	91	1	565	24	16	24	34	1.96
22030--22171	62	2.3	63	90	2	223	26	15	24	33	1.95
22097--22612	106	4.9	106	92	0	870	22	18	25	34	1.96
24198--24262	19	3.2	20	82	8	69	0	12	7	80	0.91
24214--24275	15	4.2	14	84	12	72	0	8	8	83	0.80
24220--24275	16	3.7	16	82	15	66	0	7	8	83	0.80
24207--24275	19	3.5	19	82	7	77	0	10	7	82	0.84
24219--24287	31	2.3	30	82	9	88	1	11	8	78	1.03
28359--28422	32	2.0	32	96	0	119	17	35	25	21	1.95
29668--29828	64	2.5	65	84	7	195	33	18	21	27	1.96
30408--30443	17	2.0	19	89	10	58	44	5	11	38	1.63
30577--30684	31	3.5	31	81	3	112	24	18	21	36	1.95
30599--30705	31	3.5	31	81	6	94	24	18	23	33	1.97
32578--32612	11	3.3	11	96	4	63	65	0	20	14	1.26
33887--34047	64	2.5	65	86	7	204	33	18	21	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34624--34659	14	2.4	16	82	17	51	41	5	13	38	1.68
34793--34900	31	3.5	31	79	3	103	23	18	21	37	1.95
34815--34921	31	3.5	31	81	6	94	23	18	23	34	1.96
35730--35782	10	4.4	13	77	20	53	71	0	1	26	0.96
35996--36022	2	13.5	2	100	0	54	51	0	0	48	1.00
36054--36123	29	2.5	28	81	11	72	70	1	1	27	1.05
36508--36600	37	2.5	37	82	0	105	31	12	12	43	1.81
39443--39531	42	2.1	42	83	4	108	8	23	24	42	1.83
39512--39543	12	2.7	12	95	0	55	6	28	18	46	1.73
39939--39988	23	2.2	23	89	7	75	14	20	24	42	1.88
39966--40086	35	3.5	34	86	6	154	9	24	23	42	1.83
40380--40414	17	2.1	17	88	0	52	40	0	8	51	1.33
41449--41479	15	2.1	15	93	0	53	6	16	51	25	1.68
44550--44595	14	3.3	14	85	11	67	43	26	2	28	1.66
44550--44606	28	2.0	28	83	6	71	45	28	3	22	1.69
48356--48446	20	4.9	20	68	20	72	34	5	15	45	1.69
48355--48504	53	2.9	52	96	3	275	32	6	13	48	1.67
48461--48500	20	2.0	20	95	0	71	37	5	12	45	1.64
53070--53160	20	4.9	20	68	20	72	34	5	15	45	1.69
53069--53195	54	2.4	53	96	2	229	32	5	14	48	1.66
57527--57561	17	2.1	17	100	0	70	34	11	20	34	1.88
62830--62862	15	2.2	15	94	0	57	45	3	18	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63254--63347	42	2.3	42	86	1	127	28	20	7	43	1.78
65852--65885	17	2.1	16	88	5	50	76	0	8	14	1.01
66358--66403	23	2.0	23	83	8	58	56	13	2	28	1.48
69678--69721	20	2.2	20	84	4	63	65	0	15	18	1.27

Tables:   1

The End!