Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005453.1 Hibiscus syriacus cultivar Beakdansim tig00012492_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68648

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4679--4751
18
3.9
18
71
7
65
21
19
30
28
1.98
14700--14827
64
2.0
67
90
7
210
34
19
19
26
1.96
15401--15463
23
2.7
23
87
4
92
20
26
26
25
1.99
19255--19317
20
2.9
21
79
9
65
17
23
34
23
1.96
25944--26014
35
2.0
35
100
0
142
28
14
29
28
1.95
25948--26022
35
2.1
35
95
0
132
29
14
32
24
1.95
29100--29150
26
2.0
26
96
0
93
33
11
5
49
1.64
29102--29157
26
2.2
26
90
0
85
32
16
5
46
1.69
29887--29919
16
2.1
16
88
11
50
42
6
0
51
1.26
30338--30710
92
4.1
91
83
5
464
39
10
21
27
1.87
44141--44221
24
3.3
26
79
10
89
44
0
2
53
1.14
44123--44276
61
2.5
63
91
6
251
42
0
2
55
1.14
44636--44724
28
3.1
28
63
15
72
40
2
15
41
1.60
44939--44998
31
1.9
31
93
0
102
45
8
6
40
1.61
45925--46339
36
11.6
36
77
11
374
45
3
6
44
1.47
45923--46440
71
7.3
72
80
10
500
44
3
6
45
1.47
46185--46325
68
2.1
66
84
7
180
43
4
7
45
1.50
46325--46388
29
2.2
29
83
5
76
42
7
4
45
1.54
46287--46426
67
2.1
68
86
5
198
42
5
5
45
1.51
45925--46413
36
13.8
36
72
17
282
44
4
6
44
1.47
45931--46439
139
3.6
136
77
11
431
44
3
6
45
1.48
47777--47876
14
6.9
14
69
17
62
20
7
2
71
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48010--48053
4
11.0
4
85
9
63
22
2
0
75
0.92
48010--48088
33
2.4
32
78
12
81
20
6
2
70
1.20
48150--48179
13
2.3
13
94
0
51
30
0
0
70
0.88
51744--51888
67
2.2
67
94
0
254
32
21
15
30
1.95
51806--52084
110
2.5
110
89
0
414
33
24
17
24
1.96
52184--52547
84
4.3
84
86
4
484
31
25
19
23
1.98
52184--52547
169
2.2
170
87
5
524
31
25
19
23
1.98
53100--53615
71
7.3
71
81
10
524
45
3
5
45
1.43
53397--53462
31
2.2
31
86
5
91
48
3
6
42
1.43
53100--53534
36
12.2
35
79
11
413
46
3
5
44
1.43
53464--53601
67
2.1
67
86
5
192
44
5
5
44
1.50
53500--53563
29
2.2
29
85
0
83
46
6
6
40
1.54
53108--53614
103
4.8
101
76
13
370
45
3
5
44
1.44
53622--53669
3
16.7
3
85
8
55
25
2
0
72
0.95
53622--53669
8
6.2
8
75
22
50
25
2
0
72
0.95
54778--54846
33
2.1
34
86
13
99
8
11
14
65
1.47
55277--55318
7
6.4
7
78
15
54
28
0
0
71
0.86
55278--55318
19
2.2
19
90
0
64
29
0
0
70
0.87
61798--61825
14
2.0
14
100
0
56
21
14
57
7
1.61
64761--64790
12
2.6
12
94
5
53
43
0
0
56
0.99
64725--64976
118
2.2
116
83
5
330
41
3
3
51
1.35
64757--65024
118
2.3
117
79
11
273
44
3
2
49
1.34

Tables:   1

The End!